Wall clock time and date at job start Mon Mar 30 2020 05:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47278 * 2 1 4 4 C 1.42899 * 114.00415 * 179.97438 * 3 2 1 5 5 C 1.53003 * 113.27606 * 46.93551 * 4 3 2 6 6 C 1.53490 * 114.20823 * 179.97438 * 4 3 2 7 7 N 1.47070 * 87.98468 * 87.52310 * 6 4 3 8 8 C 1.34775 * 136.05852 * 207.08038 * 7 6 4 9 9 O 1.21587 * 119.99648 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00187 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00241 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46998 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00347 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99775 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46867 * 90.00546 * 18 16 14 20 20 H 1.48501 * 109.47216 * 210.00404 * 18 16 14 21 21 H 1.48499 * 109.47135 * 330.00745 * 18 16 14 22 22 C 1.47068 * 87.88069 * 27.34439 * 7 6 4 23 23 H 1.09002 * 109.46697 * 60.00129 * 1 2 3 24 24 H 1.09003 * 109.46973 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47134 * 300.00237 * 1 2 3 26 26 H 1.08997 * 109.47725 * 240.00108 * 2 1 3 27 27 H 1.09005 * 109.47190 * 119.99799 * 2 1 3 28 28 H 1.09004 * 109.46881 * 193.06812 * 5 4 3 29 29 H 1.08993 * 109.47334 * 313.06203 * 5 4 3 30 30 H 1.08997 * 109.47346 * 73.06882 * 5 4 3 31 31 H 1.08996 * 113.47203 * 332.74344 * 6 4 3 32 32 H 1.09009 * 113.47085 * 202.30371 * 6 4 3 33 33 H 0.97010 * 119.99849 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47175 * 60.00333 * 11 10 8 35 35 H 1.09001 * 109.47297 * 299.99840 * 11 10 8 36 36 H 1.08993 * 109.46955 * 300.00226 * 12 11 10 37 37 H 1.09000 * 109.47050 * 60.00054 * 12 11 10 38 38 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 39 39 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 40 40 H 0.96991 * 119.99882 * 179.97438 * 17 16 14 41 41 H 1.08995 * 113.47119 * 87.44240 * 22 7 6 42 42 H 1.09005 * 113.46000 * 217.87880 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 4.1099 0.5511 -1.0258 6 6 3.9477 2.9054 0.0000 7 7 3.8698 2.8790 1.4684 8 6 3.6969 3.7888 2.4475 9 8 3.5586 4.9640 2.1679 10 7 3.6762 3.3959 3.7365 11 6 3.4877 4.3847 4.8008 12 6 3.5043 3.6812 6.1594 13 6 3.3081 4.7141 7.2710 14 6 3.3251 4.0212 8.6092 15 1 3.4626 2.9513 8.6616 16 6 3.1651 4.7532 9.7666 17 7 3.1805 4.1487 10.9345 18 14 2.9281 6.6039 9.6760 19 1 1.4791 6.9129 9.5752 20 1 3.4848 7.2348 10.8996 21 1 3.6318 7.1352 8.4811 22 6 4.0703 1.4237 1.3983 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 5.1797 0.5080 -0.8215 29 1 3.6868 -0.4512 -0.9596 30 1 3.9470 0.9488 -2.0275 31 1 3.2572 3.6132 -0.4586 32 1 4.9651 3.0025 -0.3791 33 1 3.7862 2.4582 3.9596 34 1 2.5307 4.8882 4.6637 35 1 4.2930 5.1183 4.7621 36 1 2.6993 2.9474 6.1984 37 1 4.4615 3.1780 6.2963 38 1 4.1134 5.4475 7.2318 39 1 2.3511 5.2176 7.1343 40 1 3.0683 4.6637 11.7487 41 1 5.1199 1.1301 1.3880 42 1 3.4841 0.8691 2.1311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458288447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:56 Heat of formation + Delta-G solvation = -44.096991 kcal Electronic energy + Delta-G solvation = -20638.373557 eV Core-core repulsion = 17427.020299 eV Total energy + Delta-G solvation = -3211.353258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99278 -38.91683 -36.77893 -35.35861 -33.26245 -31.96058 -31.27914 -30.65520 -27.85198 -26.47954 -26.09964 -23.25559 -22.56835 -20.86060 -20.45784 -19.53989 -17.89483 -16.87551 -16.76880 -16.38495 -15.93960 -15.61718 -15.16219 -14.72385 -14.49810 -14.05613 -13.79844 -13.58691 -13.31870 -12.81918 -12.67292 -12.64989 -12.52633 -12.33771 -12.00271 -11.91754 -11.85576 -11.56277 -11.03747 -10.86914 -10.70528 -10.25552 -10.00723 -9.88473 -9.76381 -9.63570 -9.20873 -9.01283 -8.54446 -8.52659 -6.04830 -4.03383 2.46497 3.04914 3.33394 3.33953 3.40668 3.45791 3.79062 3.98858 4.40445 4.46395 4.57651 4.70102 4.87038 4.96974 4.99457 5.07441 5.08458 5.23201 5.28547 5.29525 5.33962 5.48019 5.52773 5.55369 5.62421 5.67987 5.72789 5.82035 6.07211 6.42915 6.49923 6.75798 6.86088 6.87196 7.23392 7.27042 7.39339 7.77530 8.11723 8.51904 8.73924 8.98944 9.57624 11.08460 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027615 B = 0.003130 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.698842 B = 8942.133005 C = 9359.218694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.350 6.350 4 C 0.074 3.926 5 C -0.168 4.168 6 C 0.139 3.861 7 N -0.661 5.661 8 C 0.736 3.264 9 O -0.590 6.590 10 N -0.738 5.738 11 C 0.133 3.867 12 C -0.112 4.112 13 C -0.011 4.011 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.076 3.924 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.394 0.606 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 41 H 0.092 0.908 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 -11.315 -26.202 28.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.268 6.268 4 C 0.033 3.967 5 C -0.225 4.225 6 C 0.015 3.985 7 N -0.402 5.402 8 C 0.439 3.561 9 O -0.468 6.468 10 N -0.391 5.391 11 C 0.010 3.990 12 C -0.150 4.150 13 C -0.049 4.049 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.188 1.188 22 C -0.048 4.048 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.227 0.773 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.621 -10.031 -25.980 27.856 hybrid contribution 0.095 0.203 0.373 0.435 sum 0.716 -9.828 -25.606 27.437 Atomic orbital electron populations 1.21749 0.93488 1.02344 1.03376 1.22554 0.95641 0.83867 1.00324 1.88022 1.17858 1.26476 1.94486 1.22771 0.82561 0.96899 0.94451 1.22147 1.01281 0.99824 0.99293 1.22856 1.01003 0.94544 0.80094 1.48373 1.77318 1.07730 1.06737 1.15225 0.77680 0.83327 0.79895 1.90918 1.58393 1.15325 1.82137 1.45245 1.78058 1.11698 1.04145 1.21536 1.01462 0.90608 0.85374 1.21702 1.01632 0.99694 0.91977 1.19502 0.96592 0.94859 0.93934 1.21099 1.49902 0.96033 0.88892 0.91039 1.25025 0.94561 0.98560 0.95336 1.69910 1.50682 1.36091 0.97617 0.86773 0.78837 0.85943 0.77747 1.20224 1.21387 1.18839 1.23689 1.00978 0.82483 0.97638 0.91836 0.90957 0.91670 0.92738 0.93164 0.90542 0.91201 0.90875 0.89595 0.88632 0.77306 0.91940 0.91937 0.92194 0.92176 0.96249 0.96673 0.92709 0.89035 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.38 6.01 37.16 0.22 0.60 16 3 O -0.35 -3.55 10.36 -35.23 -0.36 -3.92 16 4 C 0.07 0.59 1.49 -89.98 -0.13 0.46 16 5 C -0.17 -0.77 9.02 37.16 0.34 -0.44 16 6 C 0.14 1.37 8.04 -8.52 -0.07 1.30 16 7 N -0.66 -8.50 3.69 -190.86 -0.70 -9.20 16 8 C 0.74 12.56 8.79 -86.93 -0.76 11.80 16 9 O -0.59 -12.53 17.12 5.29 0.09 -12.44 16 10 N -0.74 -11.64 5.56 -65.22 -0.36 -12.00 16 11 C 0.13 2.40 5.67 -4.04 -0.02 2.38 16 12 C -0.11 -2.18 5.27 -26.73 -0.14 -2.32 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 18 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 22 C 0.08 0.65 7.73 -8.38 -0.06 0.58 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.29 6.36 -51.93 -0.33 -0.04 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.25 7.90 -51.93 -0.41 -0.16 16 29 H 0.07 0.27 6.12 -51.93 -0.32 -0.04 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 0.70 8.11 -51.92 -0.42 0.28 16 33 H 0.39 5.20 8.19 -40.82 -0.33 4.87 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 39 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.09 0.57 7.94 -51.93 -0.41 0.16 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -35.65 345.62 -8.05 -43.71 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.23 Total: -1.40 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.80 Total: -0.08 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.29 Total: -48.48 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.27 Total: -16.36 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.65 -8.05 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458288447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.389 kcal (2) G-P(sol) polarization free energy of solvation -35.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds