Wall clock time and date at job start Mon Mar 30 2020 05:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47278 * 2 1 4 4 C 1.42899 * 114.00415 * 179.97438 * 3 2 1 5 5 C 1.53003 * 113.27606 * 46.93551 * 4 3 2 6 6 C 1.53490 * 114.20823 * 179.97438 * 4 3 2 7 7 N 1.47070 * 87.98468 * 87.52310 * 6 4 3 8 8 C 1.34775 * 136.05852 * 207.08038 * 7 6 4 9 9 O 1.21587 * 119.99648 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00187 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00241 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46998 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00347 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99775 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46867 * 90.00546 * 18 16 14 20 20 H 1.48501 * 109.47216 * 210.00404 * 18 16 14 21 21 H 1.48499 * 109.47135 * 330.00745 * 18 16 14 22 22 C 1.47068 * 87.88069 * 27.34439 * 7 6 4 23 23 H 1.09002 * 109.46697 * 60.00129 * 1 2 3 24 24 H 1.09003 * 109.46973 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47134 * 300.00237 * 1 2 3 26 26 H 1.08997 * 109.47725 * 240.00108 * 2 1 3 27 27 H 1.09005 * 109.47190 * 119.99799 * 2 1 3 28 28 H 1.09004 * 109.46881 * 193.06812 * 5 4 3 29 29 H 1.08993 * 109.47334 * 313.06203 * 5 4 3 30 30 H 1.08997 * 109.47346 * 73.06882 * 5 4 3 31 31 H 1.08996 * 113.47203 * 332.74344 * 6 4 3 32 32 H 1.09009 * 113.47085 * 202.30371 * 6 4 3 33 33 H 0.97010 * 119.99849 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47175 * 60.00333 * 11 10 8 35 35 H 1.09001 * 109.47297 * 299.99840 * 11 10 8 36 36 H 1.08993 * 109.46955 * 300.00226 * 12 11 10 37 37 H 1.09000 * 109.47050 * 60.00054 * 12 11 10 38 38 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 39 39 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 40 40 H 0.96991 * 119.99882 * 179.97438 * 17 16 14 41 41 H 1.08995 * 113.47119 * 87.44240 * 22 7 6 42 42 H 1.09005 * 113.46000 * 217.87880 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 4.1099 0.5511 -1.0258 6 6 3.9477 2.9054 0.0000 7 7 3.8698 2.8790 1.4684 8 6 3.6969 3.7888 2.4475 9 8 3.5586 4.9640 2.1679 10 7 3.6762 3.3959 3.7365 11 6 3.4877 4.3847 4.8008 12 6 3.5043 3.6812 6.1594 13 6 3.3081 4.7141 7.2710 14 6 3.3251 4.0212 8.6092 15 1 3.4626 2.9513 8.6616 16 6 3.1651 4.7532 9.7666 17 7 3.1805 4.1487 10.9345 18 14 2.9281 6.6039 9.6760 19 1 1.4791 6.9129 9.5752 20 1 3.4848 7.2348 10.8996 21 1 3.6318 7.1352 8.4811 22 6 4.0703 1.4237 1.3983 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 5.1797 0.5080 -0.8215 29 1 3.6868 -0.4512 -0.9596 30 1 3.9470 0.9488 -2.0275 31 1 3.2572 3.6132 -0.4586 32 1 4.9651 3.0025 -0.3791 33 1 3.7862 2.4582 3.9596 34 1 2.5307 4.8882 4.6637 35 1 4.2930 5.1183 4.7621 36 1 2.6993 2.9474 6.1984 37 1 4.4615 3.1780 6.2963 38 1 4.1134 5.4475 7.2318 39 1 2.3511 5.2176 7.1343 40 1 3.0683 4.6637 11.7487 41 1 5.1199 1.1301 1.3880 42 1 3.4841 0.8691 2.1311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458288447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:56 Heat of formation + Delta-G solvation = -70.055742 kcal Electronic energy + Delta-G solvation = -20639.499213 eV Core-core repulsion = 17427.020299 eV Total energy + Delta-G solvation = -3212.478914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.85315 -40.04280 -37.59738 -36.91197 -35.15256 -33.43229 -32.33908 -31.31808 -29.26553 -27.40817 -27.13519 -24.48359 -23.66195 -22.26503 -21.58465 -20.61472 -19.12748 -18.74264 -17.61693 -17.37122 -17.03073 -16.57058 -16.30167 -15.97230 -15.83959 -15.34695 -14.88343 -14.78016 -14.71802 -14.01325 -13.79822 -13.66604 -13.25826 -13.18387 -13.10462 -12.83100 -12.75232 -12.72073 -12.60816 -12.14898 -11.93880 -11.79659 -11.62391 -11.40757 -11.34314 -11.20806 -10.77069 -10.49553 -10.29958 -9.58326 -8.30372 -6.34240 1.36582 1.37842 1.41247 1.50207 2.06302 2.35830 2.46896 2.91922 3.05380 3.17679 3.79582 4.02577 4.06236 4.17230 4.18352 4.33385 4.36222 4.44017 4.46741 4.48814 4.51821 4.58213 4.70369 4.83315 4.86501 4.90894 4.94634 4.98680 5.01686 5.03387 5.25798 5.31088 5.37436 5.48226 5.53457 5.63846 6.16714 6.26324 6.31088 6.73243 6.95669 7.30612 7.49019 8.86070 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027615 B = 0.003130 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.698842 B = 8942.133005 C = 9359.218694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 O -0.384 6.384 4 C 0.083 3.917 5 C -0.160 4.160 6 C 0.128 3.872 7 N -0.670 5.670 8 C 0.727 3.273 9 O -0.642 6.642 10 N -0.730 5.730 11 C 0.147 3.853 12 C -0.097 4.097 13 C -0.011 4.011 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.249 1.249 22 C 0.076 3.924 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.407 0.593 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.267 0.733 41 H 0.124 0.876 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 -12.095 -28.183 30.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 O -0.304 6.304 4 C 0.042 3.958 5 C -0.217 4.217 6 C 0.005 3.995 7 N -0.408 5.408 8 C 0.430 3.570 9 O -0.524 6.524 10 N -0.385 5.385 11 C 0.023 3.977 12 C -0.135 4.135 13 C -0.049 4.049 14 C -0.568 4.568 15 H 0.057 0.943 16 C -0.191 4.191 17 N -0.591 5.591 18 Si 0.770 3.230 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.172 1.172 22 C -0.046 4.046 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.243 0.757 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.383 -10.890 -28.006 30.081 hybrid contribution -0.150 0.311 0.944 1.005 sum 1.233 -10.579 -27.062 29.083 Atomic orbital electron populations 1.21787 0.93825 1.03321 1.02134 1.22728 0.95477 0.82857 1.01690 1.87986 1.19295 1.28392 1.94703 1.22790 0.81954 0.95989 0.95018 1.22136 1.02107 0.99326 0.98170 1.23246 1.02414 0.95602 0.78198 1.48507 1.75748 1.09299 1.07260 1.15423 0.77688 0.83328 0.80572 1.90868 1.60736 1.17780 1.83022 1.44976 1.77958 1.11947 1.03589 1.21182 1.00723 0.90676 0.85156 1.21461 1.02067 0.98571 0.91380 1.19459 0.96794 0.95677 0.93009 1.21443 1.49196 0.94937 0.91267 0.94342 1.25963 0.94367 1.03895 0.94881 1.70049 1.52235 1.38238 0.98540 0.85708 0.79306 0.79587 0.78385 1.19281 1.20871 1.17208 1.24037 1.03028 0.79505 0.98052 0.92267 0.88886 0.93696 0.90475 0.92517 0.88534 0.90048 0.90391 0.91839 0.85633 0.75738 0.92965 0.92563 0.91881 0.91582 0.95965 0.96262 0.92453 0.85814 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.59 6.01 71.98 0.43 1.03 16 3 O -0.38 -7.30 10.36 -148.98 -1.54 -8.84 16 4 C 0.08 1.13 1.49 -10.38 -0.02 1.11 16 5 C -0.16 -0.87 9.02 71.98 0.65 -0.22 16 6 C 0.13 2.34 8.04 83.17 0.67 3.01 16 7 N -0.67 -16.39 3.69 -876.50 -3.23 -19.62 16 8 C 0.73 24.61 8.79 179.06 1.57 26.19 16 9 O -0.64 -27.72 17.12 -3.99 -0.07 -27.79 16 10 N -0.73 -22.44 5.56 -478.53 -2.66 -25.10 16 11 C 0.15 5.19 5.67 86.38 0.49 5.68 16 12 C -0.10 -3.69 5.27 30.60 0.16 -3.53 16 13 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 14 C -0.53 -30.61 9.66 25.60 0.25 -30.36 16 15 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 16 C 0.01 0.35 5.47 84.65 0.46 0.81 16 17 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 18 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 22 C 0.08 1.09 7.73 83.26 0.64 1.73 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.59 6.36 -2.39 -0.02 0.58 16 27 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.10 0.18 7.90 -2.39 -0.02 0.16 16 29 H 0.08 0.30 6.12 -2.39 -0.01 0.28 16 30 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.13 1.51 8.11 -2.38 -0.02 1.49 16 33 H 0.41 10.16 8.19 -92.70 -0.76 9.40 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 39 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 40 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.12 1.03 7.94 -2.39 -0.02 1.01 16 42 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -79.14 345.62 1.03 -78.11 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.18 Total: 11.99 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 6.18 Total: 3.80 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -5.59 Total: -104.29 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.61 Total: -36.63 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -79.14 1.03 -78.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458288447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.051 kcal (2) G-P(sol) polarization free energy of solvation -79.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds