Wall clock time and date at job start Mon Mar 30 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34769 * 119.99794 * 2 1 4 4 O 1.21283 * 119.99981 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00564 * 359.97438 * 3 2 1 6 6 H 1.09005 * 109.46962 * 320.00225 * 5 3 2 7 7 N 1.46901 * 109.47577 * 200.00362 * 5 3 2 8 8 C 1.52991 * 109.47217 * 79.99846 * 5 3 2 9 9 C 1.53001 * 109.47514 * 185.00600 * 8 5 3 10 10 C 1.53005 * 109.47429 * 180.02562 * 9 8 5 11 11 C 1.50700 * 109.46829 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00340 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99479 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99575 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00171 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.46987 * 89.99922 * 15 13 11 17 17 H 1.48498 * 109.46908 * 209.99602 * 15 13 11 18 18 H 1.48489 * 109.47020 * 329.99915 * 15 13 11 19 19 C 1.46496 * 119.99960 * 179.97438 * 2 1 3 20 20 H 1.09002 * 110.43579 * 180.70212 * 19 2 1 21 21 C 1.54816 * 110.60051 * 58.07807 * 19 2 1 22 22 C 1.54989 * 102.09401 * 220.38690 * 21 19 2 23 23 O 1.44383 * 103.48976 * 37.02246 * 22 21 19 24 24 C 1.43739 * 106.97729 * 319.94114 * 23 22 21 25 25 H 1.09005 * 109.47193 * 270.00405 * 1 2 3 26 26 H 1.09004 * 109.46725 * 30.00063 * 1 2 3 27 27 H 1.08996 * 109.47337 * 150.00286 * 1 2 3 28 28 H 1.00899 * 110.99717 * 299.99926 * 7 5 3 29 29 H 1.00902 * 110.99610 * 63.94967 * 7 5 3 30 30 H 1.09001 * 109.47593 * 305.00391 * 8 5 3 31 31 H 1.09007 * 109.47346 * 65.00329 * 8 5 3 32 32 H 1.09004 * 109.46871 * 300.00085 * 9 8 5 33 33 H 1.08999 * 109.47322 * 60.00103 * 9 8 5 34 34 H 1.08991 * 109.46798 * 299.99921 * 10 9 8 35 35 H 1.08999 * 109.46890 * 59.99710 * 10 9 8 36 36 H 0.97000 * 119.99419 * 180.02562 * 14 13 11 37 37 H 1.08999 * 110.90817 * 338.58684 * 21 19 2 38 38 H 1.09005 * 110.90433 * 102.19012 * 21 19 2 39 39 H 1.08999 * 110.62077 * 278.52724 * 22 21 19 40 40 H 1.08999 * 110.75439 * 155.59172 * 22 21 19 41 41 H 1.09005 * 109.87679 * 267.08788 * 24 23 22 42 42 H 1.09000 * 109.88136 * 145.93926 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5222 2.3932 -0.6615 7 7 2.2678 3.5470 -0.4742 8 6 0.9130 2.7891 1.4196 9 6 0.0430 4.0475 1.3991 10 6 -0.4290 4.3647 2.8195 11 6 -1.2853 5.6046 2.7992 12 1 -1.4744 6.1150 1.8664 13 6 -1.8283 6.0866 3.9713 14 7 -2.5760 7.1684 3.9535 15 14 -1.5018 5.2032 5.5845 16 1 -0.2772 5.7591 6.2143 17 1 -2.6580 5.3948 6.4965 18 1 -1.3107 3.7537 5.3252 19 6 2.1975 -1.2687 0.0006 20 1 3.2723 -1.0876 0.0130 21 6 1.8063 -2.1241 -1.2291 22 6 1.7287 -3.5483 -0.6225 23 8 1.1715 -3.3251 0.6907 24 6 1.7818 -2.1310 1.2082 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 3.0762 3.6404 0.1223 29 1 2.5419 3.3936 -1.4332 30 1 0.3311 1.9515 1.8044 31 1 1.7780 2.9558 2.0617 32 1 0.6249 4.8852 1.0144 33 1 -0.8220 3.8808 0.7572 34 1 -1.0106 3.5272 3.2045 35 1 0.4363 4.5315 3.4611 36 1 -2.9577 7.5077 4.7782 37 1 0.8383 -1.8166 -1.6248 38 1 2.5749 -2.0711 -2.0002 39 1 2.7230 -3.9884 -0.5477 40 1 1.0719 -4.1852 -1.2149 41 1 2.6606 -2.3899 1.7988 42 1 1.0664 -1.5860 1.8240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594434996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:39 Heat of formation + Delta-G solvation = -88.201093 kcal Electronic energy + Delta-G solvation = -21294.821341 eV Core-core repulsion = 18081.555585 eV Total energy + Delta-G solvation = -3213.265756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79517 -39.23581 -35.91676 -35.70332 -33.37917 -31.63378 -31.54513 -29.44967 -28.23911 -27.10171 -25.32211 -23.21178 -22.51043 -21.01404 -20.05671 -19.21994 -17.81899 -17.02535 -16.70847 -16.38224 -15.91847 -15.88768 -15.39237 -14.88900 -14.50945 -14.10450 -13.86491 -13.48314 -13.27698 -12.89244 -12.69987 -12.56818 -12.45606 -12.17508 -11.93112 -11.85078 -11.71264 -11.34164 -11.28069 -10.83183 -10.70883 -10.35023 -10.12335 -9.88398 -9.64890 -9.49339 -9.13683 -8.95115 -8.65501 -8.48979 -5.99693 -3.96840 2.38448 2.66063 3.33598 3.40725 3.44098 3.53245 4.14196 4.32310 4.45367 4.49104 4.57065 4.63639 4.68443 4.78236 4.88260 5.00390 5.23600 5.24102 5.27266 5.31320 5.34614 5.35820 5.49441 5.53976 5.62458 5.80931 5.94901 6.19952 6.27672 6.41600 6.63969 6.76564 6.95489 7.00596 7.15782 7.39775 7.44358 7.53447 7.85408 7.92182 8.60373 9.06818 9.63443 11.14015 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.003892 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.572507 B = 7191.861960 C = 7854.155704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.607 5.607 3 C 0.485 3.515 4 O -0.550 6.550 5 C 0.078 3.922 6 H 0.104 0.896 7 N -0.811 5.811 8 C -0.107 4.107 9 C -0.092 4.092 10 C -0.016 4.016 11 C -0.516 4.516 12 H 0.072 0.928 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.267 1.267 19 C 0.104 3.896 20 H 0.113 0.887 21 C -0.167 4.167 22 C 0.047 3.953 23 O -0.374 6.374 24 C 0.036 3.964 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.350 0.650 29 H 0.339 0.661 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.012 0.988 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.761 -20.924 -11.054 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C 0.272 3.728 4 O -0.427 6.427 5 C -0.038 4.038 6 H 0.122 0.878 7 N -0.339 5.339 8 C -0.145 4.145 9 C -0.129 4.129 10 C -0.053 4.053 11 C -0.554 4.554 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.707 3.293 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.191 1.191 19 C 0.000 4.000 20 H 0.131 0.869 21 C -0.206 4.206 22 C -0.030 4.030 23 O -0.293 6.293 24 C -0.042 4.042 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.164 0.836 29 H 0.151 0.849 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.521 -20.414 -10.688 24.568 hybrid contribution 0.919 -1.090 0.710 1.593 sum 9.440 -21.505 -9.978 25.517 Atomic orbital electron populations 1.21967 0.78770 1.03642 1.02991 1.47993 1.07315 1.05174 1.73543 1.22654 0.88817 0.86872 0.74460 1.90657 1.14256 1.87471 1.50319 1.21806 0.96203 0.85067 1.00679 0.87833 1.59057 1.24269 1.43312 1.07291 1.21691 1.00521 1.00567 0.91764 1.21364 0.97331 0.94945 0.99276 1.19601 0.95903 0.97000 0.92804 1.21174 1.29425 1.09194 0.95651 0.90983 1.25048 0.94782 0.94760 0.99044 1.69924 1.34246 1.22644 1.27693 0.86781 0.77790 0.80835 0.83861 1.20370 1.21487 1.19125 1.22472 0.98993 0.84119 0.94432 0.86928 1.23522 1.03591 0.95306 0.98143 1.23532 0.99264 0.96204 0.83977 1.88917 1.65171 1.43668 1.31546 1.23560 0.98906 0.85805 0.95922 0.91623 0.89979 0.90682 0.83586 0.84915 0.91824 0.91939 0.91245 0.93026 0.97002 0.97280 0.92840 0.89582 0.89643 0.91899 0.88593 0.91440 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 8.49 59.85 0.51 1.10 16 2 N -0.61 -6.34 2.80 -172.18 -0.48 -6.83 16 3 C 0.48 6.26 6.92 -10.99 -0.08 6.18 16 4 O -0.55 -8.62 15.61 5.55 0.09 -8.54 16 5 C 0.08 1.00 2.42 -68.87 -0.17 0.84 16 6 H 0.10 1.19 6.31 -51.93 -0.33 0.86 16 7 N -0.81 -10.62 8.44 -5.65 -0.05 -10.66 16 8 C -0.11 -1.64 4.77 -26.73 -0.13 -1.76 16 9 C -0.09 -1.76 5.04 -26.73 -0.13 -1.89 16 10 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 11 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 12 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 14 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 15 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 19 C 0.10 1.00 3.45 -66.40 -0.23 0.77 16 20 H 0.11 1.23 6.98 -51.93 -0.36 0.87 16 21 C -0.17 -1.22 6.65 -24.72 -0.16 -1.38 16 22 C 0.05 0.33 7.72 38.21 0.29 0.63 16 23 O -0.37 -3.75 11.52 -35.23 -0.41 -4.16 16 24 C 0.04 0.34 7.16 37.73 0.27 0.61 16 25 H 0.07 0.58 7.41 -51.93 -0.38 0.19 16 26 H 0.08 0.66 5.94 -51.93 -0.31 0.35 16 27 H 0.07 0.54 6.41 -51.93 -0.33 0.20 16 28 H 0.35 4.75 8.58 -39.29 -0.34 4.41 16 29 H 0.34 3.85 9.06 -39.29 -0.36 3.49 16 30 H 0.06 0.90 6.94 -51.93 -0.36 0.54 16 31 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.07 1.41 7.75 -51.93 -0.40 1.01 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 35 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.09 0.61 6.34 -51.93 -0.33 0.28 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.92 7.21 -51.93 -0.37 0.54 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -33.34 331.18 -6.89 -40.22 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.76 Total: 3.92 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.37 Total: -8.78 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.24 Total: -44.96 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.32 Total: -12.69 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.34 -6.89 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594434996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.979 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds