Wall clock time and date at job start Mon Mar 30 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34769 * 119.99794 * 2 1 4 4 O 1.21283 * 119.99981 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00564 * 359.97438 * 3 2 1 6 6 H 1.09005 * 109.46962 * 320.00225 * 5 3 2 7 7 N 1.46901 * 109.47577 * 200.00362 * 5 3 2 8 8 C 1.52991 * 109.47217 * 79.99846 * 5 3 2 9 9 C 1.53001 * 109.47514 * 185.00600 * 8 5 3 10 10 C 1.53005 * 109.47429 * 180.02562 * 9 8 5 11 11 C 1.50700 * 109.46829 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00340 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99479 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99575 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00171 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.46987 * 89.99922 * 15 13 11 17 17 H 1.48498 * 109.46908 * 209.99602 * 15 13 11 18 18 H 1.48489 * 109.47020 * 329.99915 * 15 13 11 19 19 C 1.46496 * 119.99960 * 179.97438 * 2 1 3 20 20 H 1.09002 * 110.43579 * 180.70212 * 19 2 1 21 21 C 1.54816 * 110.60051 * 58.07807 * 19 2 1 22 22 C 1.54989 * 102.09401 * 220.38690 * 21 19 2 23 23 O 1.44383 * 103.48976 * 37.02246 * 22 21 19 24 24 C 1.43739 * 106.97729 * 319.94114 * 23 22 21 25 25 H 1.09005 * 109.47193 * 270.00405 * 1 2 3 26 26 H 1.09004 * 109.46725 * 30.00063 * 1 2 3 27 27 H 1.08996 * 109.47337 * 150.00286 * 1 2 3 28 28 H 1.00899 * 110.99717 * 299.99926 * 7 5 3 29 29 H 1.00902 * 110.99610 * 63.94967 * 7 5 3 30 30 H 1.09001 * 109.47593 * 305.00391 * 8 5 3 31 31 H 1.09007 * 109.47346 * 65.00329 * 8 5 3 32 32 H 1.09004 * 109.46871 * 300.00085 * 9 8 5 33 33 H 1.08999 * 109.47322 * 60.00103 * 9 8 5 34 34 H 1.08991 * 109.46798 * 299.99921 * 10 9 8 35 35 H 1.08999 * 109.46890 * 59.99710 * 10 9 8 36 36 H 0.97000 * 119.99419 * 180.02562 * 14 13 11 37 37 H 1.08999 * 110.90817 * 338.58684 * 21 19 2 38 38 H 1.09005 * 110.90433 * 102.19012 * 21 19 2 39 39 H 1.08999 * 110.62077 * 278.52724 * 22 21 19 40 40 H 1.08999 * 110.75439 * 155.59172 * 22 21 19 41 41 H 1.09005 * 109.87679 * 267.08788 * 24 23 22 42 42 H 1.09000 * 109.88136 * 145.93926 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5222 2.3932 -0.6615 7 7 2.2678 3.5470 -0.4742 8 6 0.9130 2.7891 1.4196 9 6 0.0430 4.0475 1.3991 10 6 -0.4290 4.3647 2.8195 11 6 -1.2853 5.6046 2.7992 12 1 -1.4744 6.1150 1.8664 13 6 -1.8283 6.0866 3.9713 14 7 -2.5760 7.1684 3.9535 15 14 -1.5018 5.2032 5.5845 16 1 -0.2772 5.7591 6.2143 17 1 -2.6580 5.3948 6.4965 18 1 -1.3107 3.7537 5.3252 19 6 2.1975 -1.2687 0.0006 20 1 3.2723 -1.0876 0.0130 21 6 1.8063 -2.1241 -1.2291 22 6 1.7287 -3.5483 -0.6225 23 8 1.1715 -3.3251 0.6907 24 6 1.7818 -2.1310 1.2082 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 3.0762 3.6404 0.1223 29 1 2.5419 3.3936 -1.4332 30 1 0.3311 1.9515 1.8044 31 1 1.7780 2.9558 2.0617 32 1 0.6249 4.8852 1.0144 33 1 -0.8220 3.8808 0.7572 34 1 -1.0106 3.5272 3.2045 35 1 0.4363 4.5315 3.4611 36 1 -2.9577 7.5077 4.7782 37 1 0.8383 -1.8166 -1.6248 38 1 2.5749 -2.0711 -2.0002 39 1 2.7230 -3.9884 -0.5477 40 1 1.0719 -4.1852 -1.2149 41 1 2.6606 -2.3899 1.7988 42 1 1.0664 -1.5860 1.8240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594434996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:39 Heat of formation + Delta-G solvation = -113.280546 kcal Electronic energy + Delta-G solvation = -21295.908867 eV Core-core repulsion = 18081.555585 eV Total energy + Delta-G solvation = -3214.353282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66539 -40.04623 -37.21862 -36.56316 -35.21313 -33.37150 -32.31951 -30.21718 -29.70862 -27.89572 -26.72514 -24.23089 -23.58437 -22.01485 -21.64965 -20.11953 -18.87902 -18.70596 -17.80112 -17.23161 -16.92143 -16.72875 -16.30027 -16.16491 -15.72001 -15.61007 -14.91813 -14.80937 -14.35192 -14.24813 -13.74237 -13.69887 -13.41806 -13.24336 -13.12462 -12.95229 -12.73776 -12.47856 -12.36307 -12.31601 -11.91826 -11.75358 -11.56718 -11.39814 -11.23895 -11.06962 -10.79169 -10.72575 -9.77900 -9.70468 -8.25743 -6.28876 1.37843 1.38695 1.39119 1.50990 1.82945 2.38870 2.90237 3.09869 3.35929 3.51842 3.62391 3.75999 3.90799 3.96170 4.05352 4.09480 4.18170 4.29214 4.47550 4.53761 4.60599 4.63032 4.68785 4.79675 4.83240 4.89959 4.90993 5.01415 5.06339 5.12643 5.21011 5.41709 5.65352 5.71948 5.76431 5.77574 6.00680 6.23453 6.34790 6.44999 6.80087 6.96955 7.35527 8.91359 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024183 B = 0.003892 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.572507 B = 7191.861960 C = 7854.155704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.599 5.599 3 C 0.486 3.514 4 O -0.582 6.582 5 C 0.085 3.915 6 H 0.122 0.878 7 N -0.820 5.820 8 C -0.096 4.096 9 C -0.081 4.081 10 C -0.014 4.014 11 C -0.528 4.528 12 H 0.031 0.969 13 C 0.001 3.999 14 N -0.954 5.954 15 Si 0.951 3.049 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.244 1.244 19 C 0.100 3.900 20 H 0.097 0.903 21 C -0.159 4.159 22 C 0.045 3.955 23 O -0.392 6.392 24 C 0.039 3.961 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.346 0.654 29 H 0.348 0.652 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.010 0.990 36 H 0.265 0.735 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.004 -23.428 -11.023 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.331 5.331 3 C 0.273 3.727 4 O -0.462 6.462 5 C -0.031 4.031 6 H 0.139 0.861 7 N -0.349 5.349 8 C -0.135 4.135 9 C -0.118 4.118 10 C -0.052 4.052 11 C -0.567 4.567 12 H 0.050 0.950 13 C -0.195 4.195 14 N -0.596 5.596 15 Si 0.774 3.226 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.167 1.167 19 C -0.004 4.004 20 H 0.115 0.885 21 C -0.197 4.197 22 C -0.031 4.031 23 O -0.311 6.311 24 C -0.039 4.039 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.087 0.913 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.751 -22.954 -10.685 26.789 hybrid contribution 0.805 -0.282 0.612 1.050 sum 9.556 -23.236 -10.073 27.069 Atomic orbital electron populations 1.22157 0.77387 1.04961 1.03462 1.48021 1.08164 1.04846 1.72113 1.22517 0.88305 0.87425 0.74432 1.90648 1.15540 1.87904 1.52079 1.21692 0.96752 0.85157 0.99470 0.86060 1.59070 1.24245 1.43610 1.07958 1.21500 0.99566 0.98955 0.93444 1.21161 0.97845 0.96413 0.96427 1.19578 0.95053 0.94808 0.95733 1.21557 1.30064 1.10806 0.94224 0.95019 1.26048 0.94484 0.95584 1.03432 1.70083 1.35806 1.24664 1.28998 0.85652 0.77843 0.80608 0.78487 1.19610 1.21012 1.16717 1.22533 0.98078 0.83939 0.95852 0.88508 1.23490 1.04112 0.94851 0.97266 1.23721 1.00203 0.96293 0.82895 1.88898 1.65647 1.43657 1.32935 1.23492 0.98798 0.85784 0.95785 0.91538 0.89179 0.88959 0.84015 0.83824 0.90212 0.92802 0.92872 0.92745 0.96002 0.97130 0.92626 0.88978 0.88774 0.90986 0.86794 0.91260 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 8.49 127.77 1.08 1.97 16 2 N -0.60 -11.30 2.80 -817.04 -2.29 -13.59 16 3 C 0.49 11.78 6.92 87.66 0.61 12.39 16 4 O -0.58 -17.76 15.61 -3.04 -0.05 -17.81 16 5 C 0.08 2.03 2.42 44.17 0.11 2.14 16 6 H 0.12 2.47 6.31 -2.38 -0.02 2.46 16 7 N -0.82 -20.68 8.44 -171.80 -1.45 -22.13 16 8 C -0.10 -2.76 4.77 30.59 0.15 -2.62 16 9 C -0.08 -3.03 5.04 30.60 0.15 -2.87 16 10 C -0.01 -0.66 4.04 29.85 0.12 -0.54 16 11 C -0.53 -30.80 9.66 25.60 0.25 -30.56 16 12 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 13 C 0.00 0.04 5.47 84.65 0.46 0.50 16 14 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 15 Si 0.95 44.71 27.47 68.60 1.88 46.60 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 18 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 19 C 0.10 1.75 3.45 45.98 0.16 1.90 16 20 H 0.10 2.03 6.98 -2.39 -0.02 2.01 16 21 C -0.16 -1.92 6.65 31.89 0.21 -1.71 16 22 C 0.05 0.52 7.72 72.66 0.56 1.08 16 23 O -0.39 -7.04 11.52 -148.98 -1.72 -8.76 16 24 C 0.04 0.68 7.16 72.35 0.52 1.20 16 25 H 0.07 0.98 7.41 -2.38 -0.02 0.96 16 26 H 0.09 1.16 5.94 -2.39 -0.01 1.15 16 27 H 0.09 1.03 6.41 -2.39 -0.02 1.01 16 28 H 0.35 9.22 8.58 -89.69 -0.77 8.45 16 29 H 0.35 7.54 9.06 -89.69 -0.81 6.73 16 30 H 0.08 2.04 6.94 -2.39 -0.02 2.02 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 32 H 0.05 2.15 7.75 -2.38 -0.02 2.14 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 35 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.09 1.02 6.34 -2.39 -0.02 1.00 16 38 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.09 1.59 7.21 -2.39 -0.02 1.57 16 Total: -1.00 -72.43 331.18 0.45 -71.98 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.61 Total: 21.26 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 4.38 Total: -17.12 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -3.44 Total: -96.15 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -1.76 Total: -26.57 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.60 kcal Total: -72.43 0.45 -71.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594434996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.299 kcal (2) G-P(sol) polarization free energy of solvation -72.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds