Wall clock time and date at job start Mon Mar 30 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47012 * 111.00251 * 2 1 4 4 C 1.53100 * 109.26064 * 182.39507 * 3 2 1 5 5 O 1.43012 * 109.25568 * 303.14858 * 4 3 2 6 6 C 1.43017 * 113.73820 * 58.67218 * 5 4 3 7 7 C 1.47014 * 111.00190 * 123.63639 * 2 1 3 8 8 H 1.09004 * 109.54037 * 297.56344 * 7 2 1 9 9 C 1.52999 * 109.50805 * 57.67140 * 7 2 1 10 10 N 1.46505 * 109.46970 * 54.30959 * 9 7 2 11 11 C 1.34774 * 119.99623 * 174.91592 * 10 9 7 12 12 O 1.21286 * 120.00580 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00003 * 180.02562 * 11 10 9 14 14 C 1.52995 * 109.47660 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47594 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47532 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99593 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00329 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00244 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00364 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47210 * 89.99639 * 20 18 16 22 22 H 1.48497 * 109.47266 * 210.00199 * 20 18 16 23 23 H 1.48500 * 109.46812 * 330.00124 * 20 18 16 24 24 H 1.09000 * 109.47111 * 290.35661 * 1 2 3 25 25 H 1.08997 * 109.47416 * 50.35916 * 1 2 3 26 26 H 1.09000 * 109.47156 * 170.36298 * 1 2 3 27 27 H 1.08997 * 109.50817 * 62.45874 * 3 2 1 28 28 H 1.09004 * 109.50641 * 302.32594 * 3 2 1 29 29 H 1.09000 * 109.50596 * 183.21445 * 4 3 2 30 30 H 1.08994 * 109.54070 * 63.10883 * 4 3 2 31 31 H 1.09001 * 109.50841 * 181.38769 * 6 5 4 32 32 H 1.08999 * 109.54263 * 61.28664 * 6 5 4 33 33 H 1.08996 * 109.47330 * 294.31262 * 9 7 2 34 34 H 1.09001 * 109.47180 * 174.30739 * 9 7 2 35 35 H 0.96998 * 120.00236 * 354.91946 * 10 9 7 36 36 H 1.09006 * 109.47071 * 300.00223 * 13 11 10 37 37 H 1.09005 * 109.47088 * 59.99717 * 13 11 10 38 38 H 1.09006 * 109.46755 * 300.00042 * 14 13 11 39 39 H 1.08997 * 109.47096 * 59.99444 * 14 13 11 40 40 H 1.08997 * 109.47522 * 299.99917 * 15 14 13 41 41 H 1.09005 * 109.46919 * 59.99487 * 15 14 13 42 42 H 0.97000 * 120.00763 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0175 0.5574 1.0402 6 6 3.5249 -0.7849 1.0709 7 6 1.9958 -0.7602 1.1427 8 1 1.6827 -0.2850 2.0723 9 6 1.4589 -2.1921 1.0949 10 7 1.7660 -2.7855 -0.2089 11 6 1.4783 -4.0810 -0.4442 12 8 0.9649 -4.7555 0.4233 13 6 1.7947 -4.6917 -1.7851 14 6 1.3709 -6.1617 -1.7889 15 6 1.6914 -6.7815 -3.1505 16 6 1.2746 -8.2296 -3.1541 17 1 0.8255 -8.6644 -2.2733 18 6 1.4665 -8.9995 -4.2816 19 7 2.0138 -8.4703 -5.3539 20 14 0.9491 -10.7945 -4.2862 21 1 -0.4562 -10.9034 -4.7537 22 1 1.8349 -11.5626 -5.1975 23 1 1.0573 -11.3443 -2.9110 24 1 -0.3633 0.3575 0.9635 25 1 -0.3634 0.6556 -0.7913 26 1 -0.3633 -1.0132 -0.1720 27 1 1.6828 1.8825 0.9110 28 1 1.6134 1.9092 -0.8682 29 1 3.9222 2.3398 -0.0031 30 1 3.8391 0.8648 -0.9965 31 1 3.9222 -1.2985 1.9463 32 1 3.8385 -1.3091 0.1681 33 1 0.3792 -2.1805 1.2435 34 1 1.9278 -2.7824 1.8822 35 1 2.1763 -2.2461 -0.9028 36 1 1.2535 -4.1559 -2.5651 37 1 2.8662 -4.6215 -1.9726 38 1 1.9117 -6.6978 -1.0089 39 1 0.2994 -6.2315 -1.6016 40 1 1.1504 -6.2454 -3.9302 41 1 2.7629 -6.7117 -3.3383 42 1 2.1492 -9.0120 -6.1471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600421052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:55 Heat of formation + Delta-G solvation = -92.000957 kcal Electronic energy + Delta-G solvation = -20888.904247 eV Core-core repulsion = 17675.473717 eV Total energy + Delta-G solvation = -3213.430530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42050 -39.11451 -36.46319 -34.63735 -34.08366 -32.10224 -31.52843 -29.28528 -28.08246 -26.44637 -24.55271 -23.83959 -22.82962 -20.87552 -20.04324 -19.70457 -17.06453 -16.88347 -16.66931 -16.15939 -15.86068 -15.51750 -15.23202 -14.95172 -14.83511 -14.37393 -14.14095 -13.78835 -13.33311 -12.89781 -12.76003 -12.39805 -12.27820 -12.20948 -11.87935 -11.68411 -11.43712 -11.27513 -10.93104 -10.77475 -10.56056 -10.50613 -10.05015 -9.64427 -9.63104 -9.22941 -8.98389 -8.92740 -8.84796 -8.29037 -5.94736 -3.95999 2.99356 3.19330 3.36768 3.42416 3.45125 3.47328 3.53281 4.32679 4.40471 4.49907 4.51899 4.73054 4.82546 4.84923 5.10766 5.14602 5.20205 5.22893 5.34341 5.39008 5.41264 5.46440 5.51449 5.58612 5.67673 5.78775 5.79887 6.31446 6.41416 6.48837 6.60411 6.73909 6.77970 6.98491 7.21086 7.71617 7.75640 7.88064 8.06376 8.50269 8.54040 9.11229 9.67802 11.16783 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.002959 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.676083 B = 9460.063772 C = 9608.777247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.536 5.536 3 C 0.018 3.982 4 C 0.061 3.939 5 O -0.384 6.384 6 C 0.068 3.932 7 C 0.036 3.964 8 H 0.064 0.936 9 C 0.128 3.872 10 N -0.730 5.730 11 C 0.511 3.489 12 O -0.543 6.543 13 C -0.138 4.138 14 C -0.094 4.094 15 C 0.020 3.980 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.406 0.594 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 23.275 11.165 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.110 4.110 4 C -0.016 4.016 5 O -0.302 6.302 6 C -0.010 4.010 7 C -0.073 4.073 8 H 0.082 0.918 9 C 0.003 3.997 10 N -0.385 5.385 11 C 0.299 3.701 12 O -0.419 6.419 13 C -0.177 4.177 14 C -0.132 4.132 15 C -0.017 4.017 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.242 0.758 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.324 22.583 11.335 25.303 hybrid contribution -0.652 -0.299 0.090 0.723 sum 0.671 22.283 11.425 25.051 Atomic orbital electron populations 1.22451 0.86376 1.03376 1.00457 1.62174 1.08739 1.13362 1.41865 1.22825 0.96560 0.89742 1.01887 1.22701 0.92098 0.96583 0.90261 1.88007 1.69863 1.23901 1.48464 1.22741 0.91079 0.83855 1.03286 1.22660 0.96795 0.94602 0.93278 0.91795 1.21217 1.00509 0.90871 0.87070 1.46030 1.65179 1.11670 1.15597 1.21267 0.77168 0.80924 0.90723 1.90673 1.42782 1.61236 1.47214 1.21823 1.03086 0.99908 0.92929 1.21433 1.00716 0.90260 1.00835 1.19133 0.96825 0.95238 0.90507 1.21281 1.39841 0.95722 0.98699 0.92600 1.25019 0.95371 0.98482 0.95664 1.69962 1.44323 1.36291 1.03200 0.86597 0.78395 0.85141 0.77908 1.20705 1.21280 1.19844 0.95370 0.91079 0.90400 0.93923 0.89337 0.88393 0.91931 0.88069 0.91709 0.91555 0.90677 0.75848 0.89432 0.89463 0.92760 0.92796 0.96628 0.96606 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.02 60.06 0.54 0.70 16 2 N -0.54 -4.26 4.14 -234.58 -0.97 -5.23 16 3 C 0.02 0.12 5.65 -3.71 -0.02 0.10 16 4 C 0.06 0.42 7.01 37.21 0.26 0.69 16 5 O -0.38 -3.62 10.83 -35.23 -0.38 -4.00 16 6 C 0.07 0.57 6.20 37.21 0.23 0.81 16 7 C 0.04 0.30 2.24 -67.60 -0.15 0.15 16 8 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 9 C 0.13 1.31 4.67 -4.04 -0.02 1.30 16 10 N -0.73 -8.57 5.05 -60.29 -0.30 -8.87 16 11 C 0.51 8.20 7.83 -10.99 -0.09 8.12 16 12 O -0.54 -10.87 15.98 5.55 0.09 -10.78 16 13 C -0.14 -2.31 5.70 -27.89 -0.16 -2.47 16 14 C -0.09 -2.07 4.44 -26.74 -0.12 -2.19 16 15 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 16 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 20 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 25 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 26 H 0.08 0.69 6.75 -51.93 -0.35 0.34 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.57 7.26 -51.93 -0.38 0.19 16 33 H 0.07 0.72 6.84 -51.93 -0.36 0.37 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.41 4.14 7.43 -40.82 -0.30 3.84 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -33.61 338.62 -8.08 -41.69 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.26 Total: -2.18 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.07 Total: -6.33 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.54 Total: -40.68 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.29 Total: -14.77 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.61 -8.08 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600421052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.312 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds