Wall clock time and date at job start Mon Mar 30 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47012 * 111.00251 * 2 1 4 4 C 1.53100 * 109.26064 * 182.39507 * 3 2 1 5 5 O 1.43012 * 109.25568 * 303.14858 * 4 3 2 6 6 C 1.43017 * 113.73820 * 58.67218 * 5 4 3 7 7 C 1.47014 * 111.00190 * 123.63639 * 2 1 3 8 8 H 1.09004 * 109.54037 * 297.56344 * 7 2 1 9 9 C 1.52999 * 109.50805 * 57.67140 * 7 2 1 10 10 N 1.46505 * 109.46970 * 54.30959 * 9 7 2 11 11 C 1.34774 * 119.99623 * 174.91592 * 10 9 7 12 12 O 1.21286 * 120.00580 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00003 * 180.02562 * 11 10 9 14 14 C 1.52995 * 109.47660 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47594 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47532 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99593 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00329 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00244 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00364 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47210 * 89.99639 * 20 18 16 22 22 H 1.48497 * 109.47266 * 210.00199 * 20 18 16 23 23 H 1.48500 * 109.46812 * 330.00124 * 20 18 16 24 24 H 1.09000 * 109.47111 * 290.35661 * 1 2 3 25 25 H 1.08997 * 109.47416 * 50.35916 * 1 2 3 26 26 H 1.09000 * 109.47156 * 170.36298 * 1 2 3 27 27 H 1.08997 * 109.50817 * 62.45874 * 3 2 1 28 28 H 1.09004 * 109.50641 * 302.32594 * 3 2 1 29 29 H 1.09000 * 109.50596 * 183.21445 * 4 3 2 30 30 H 1.08994 * 109.54070 * 63.10883 * 4 3 2 31 31 H 1.09001 * 109.50841 * 181.38769 * 6 5 4 32 32 H 1.08999 * 109.54263 * 61.28664 * 6 5 4 33 33 H 1.08996 * 109.47330 * 294.31262 * 9 7 2 34 34 H 1.09001 * 109.47180 * 174.30739 * 9 7 2 35 35 H 0.96998 * 120.00236 * 354.91946 * 10 9 7 36 36 H 1.09006 * 109.47071 * 300.00223 * 13 11 10 37 37 H 1.09005 * 109.47088 * 59.99717 * 13 11 10 38 38 H 1.09006 * 109.46755 * 300.00042 * 14 13 11 39 39 H 1.08997 * 109.47096 * 59.99444 * 14 13 11 40 40 H 1.08997 * 109.47522 * 299.99917 * 15 14 13 41 41 H 1.09005 * 109.46919 * 59.99487 * 15 14 13 42 42 H 0.97000 * 120.00763 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0175 0.5574 1.0402 6 6 3.5249 -0.7849 1.0709 7 6 1.9958 -0.7602 1.1427 8 1 1.6827 -0.2850 2.0723 9 6 1.4589 -2.1921 1.0949 10 7 1.7660 -2.7855 -0.2089 11 6 1.4783 -4.0810 -0.4442 12 8 0.9649 -4.7555 0.4233 13 6 1.7947 -4.6917 -1.7851 14 6 1.3709 -6.1617 -1.7889 15 6 1.6914 -6.7815 -3.1505 16 6 1.2746 -8.2296 -3.1541 17 1 0.8255 -8.6644 -2.2733 18 6 1.4665 -8.9995 -4.2816 19 7 2.0138 -8.4703 -5.3539 20 14 0.9491 -10.7945 -4.2862 21 1 -0.4562 -10.9034 -4.7537 22 1 1.8349 -11.5626 -5.1975 23 1 1.0573 -11.3443 -2.9110 24 1 -0.3633 0.3575 0.9635 25 1 -0.3634 0.6556 -0.7913 26 1 -0.3633 -1.0132 -0.1720 27 1 1.6828 1.8825 0.9110 28 1 1.6134 1.9092 -0.8682 29 1 3.9222 2.3398 -0.0031 30 1 3.8391 0.8648 -0.9965 31 1 3.9222 -1.2985 1.9463 32 1 3.8385 -1.3091 0.1681 33 1 0.3792 -2.1805 1.2435 34 1 1.9278 -2.7824 1.8822 35 1 2.1763 -2.2461 -0.9028 36 1 1.2535 -4.1559 -2.5651 37 1 2.8662 -4.6215 -1.9726 38 1 1.9117 -6.6978 -1.0089 39 1 0.2994 -6.2315 -1.6016 40 1 1.1504 -6.2454 -3.9302 41 1 2.7629 -6.7117 -3.3383 42 1 2.1492 -9.0120 -6.1471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600421052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:54 Heat of formation + Delta-G solvation = -116.621514 kcal Electronic energy + Delta-G solvation = -20889.971875 eV Core-core repulsion = 17675.473717 eV Total energy + Delta-G solvation = -3214.498157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23599 -40.24121 -37.21925 -36.12913 -35.47277 -34.01416 -32.46755 -30.07689 -29.59812 -27.51733 -25.59696 -25.16315 -23.62035 -22.39035 -21.24452 -20.81540 -18.63196 -17.85636 -17.60347 -17.47155 -16.72997 -16.66567 -16.46953 -16.14540 -15.72961 -15.54704 -15.14288 -14.82332 -14.63963 -14.19897 -13.98169 -13.72998 -13.36822 -13.23626 -13.01021 -12.89503 -12.59261 -12.49558 -12.45979 -12.34992 -12.05039 -11.54076 -11.53467 -11.44565 -11.25046 -10.76701 -10.69002 -10.53192 -10.00459 -9.47279 -8.19088 -6.29053 1.40242 1.41411 1.52995 1.70724 2.23057 2.43003 2.74865 2.87268 3.13762 3.63895 3.70170 3.94468 3.99147 4.09497 4.26195 4.27726 4.28568 4.29552 4.50622 4.57715 4.60590 4.64025 4.69934 4.76753 4.86496 4.88587 4.99141 5.00108 5.03535 5.13865 5.21450 5.45987 5.56314 5.77546 5.86368 5.88743 5.90833 6.13673 6.28990 6.62609 6.86570 7.32725 7.39632 8.92460 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.002959 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.676083 B = 9460.063772 C = 9608.777247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.543 5.543 3 C 0.021 3.979 4 C 0.056 3.944 5 O -0.401 6.401 6 C 0.067 3.933 7 C 0.047 3.953 8 H 0.069 0.931 9 C 0.129 3.871 10 N -0.707 5.707 11 C 0.516 3.484 12 O -0.587 6.587 13 C -0.130 4.130 14 C -0.081 4.081 15 C 0.026 3.974 16 C -0.547 4.547 17 H 0.051 0.949 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.268 1.268 24 H 0.032 0.968 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.417 0.583 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.000 1.000 41 H 0.001 0.999 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 24.253 11.260 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.107 4.107 4 C -0.020 4.020 5 O -0.319 6.319 6 C -0.010 4.010 7 C -0.062 4.062 8 H 0.087 0.913 9 C 0.005 3.995 10 N -0.361 5.361 11 C 0.304 3.696 12 O -0.467 6.467 13 C -0.170 4.170 14 C -0.120 4.120 15 C -0.011 4.011 16 C -0.585 4.585 17 H 0.069 0.931 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.786 3.214 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.193 1.193 24 H 0.050 0.950 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.254 0.746 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.365 23.618 11.423 26.271 hybrid contribution -0.642 -0.521 0.041 0.827 sum 0.723 23.097 11.464 25.796 Atomic orbital electron populations 1.22420 0.86170 1.02707 1.01139 1.62183 1.08974 1.14273 1.41514 1.22857 0.96294 0.88964 1.02580 1.22881 0.92350 0.97218 0.89600 1.87991 1.70294 1.24200 1.49457 1.22758 0.90997 0.83826 1.03437 1.22514 0.96691 0.93233 0.93807 0.91309 1.21287 1.00388 0.91994 0.85822 1.45794 1.63504 1.10225 1.16534 1.20997 0.76879 0.81939 0.89781 1.90664 1.45166 1.62578 1.48318 1.21655 1.04433 0.96636 0.94246 1.21149 0.99647 0.93495 0.97680 1.19022 0.95408 0.94342 0.92377 1.21698 1.40434 0.97493 0.98914 0.93075 1.25907 0.95136 1.03325 0.95147 1.70065 1.44925 1.38169 1.03808 0.85499 0.78385 0.79270 0.78220 1.19715 1.20298 1.19272 0.94952 0.89955 0.91930 0.93949 0.87808 0.86637 0.91925 0.87565 0.92014 0.91949 0.91019 0.74565 0.87669 0.87576 0.94112 0.94167 0.98114 0.98079 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.02 127.69 1.15 1.47 16 2 N -0.54 -7.57 4.14 -896.08 -3.71 -11.27 16 3 C 0.02 0.23 5.65 86.32 0.49 0.72 16 4 C 0.06 0.67 7.01 72.02 0.50 1.17 16 5 O -0.40 -6.85 10.83 -148.98 -1.61 -8.47 16 6 C 0.07 1.04 6.20 72.02 0.45 1.48 16 7 C 0.05 0.70 2.24 44.93 0.10 0.80 16 8 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 9 C 0.13 2.52 4.67 86.38 0.40 2.92 16 10 N -0.71 -15.68 5.05 -463.05 -2.34 -18.01 16 11 C 0.52 16.21 7.83 87.66 0.69 16.89 16 12 O -0.59 -23.60 15.98 -3.05 -0.05 -23.65 16 13 C -0.13 -4.26 5.70 29.85 0.17 -4.09 16 14 C -0.08 -3.63 4.44 30.59 0.14 -3.49 16 15 C 0.03 1.37 4.97 29.85 0.15 1.52 16 16 C -0.55 -32.49 9.11 25.60 0.23 -32.26 16 17 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -56.76 13.29 21.44 0.28 -56.47 16 20 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 24 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 25 H 0.08 0.92 8.04 -2.39 -0.02 0.90 16 26 H 0.06 1.04 6.75 -2.39 -0.02 1.02 16 27 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.10 0.85 8.09 -2.38 -0.02 0.83 16 29 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 0.98 7.26 -2.39 -0.02 0.96 16 33 H 0.06 1.31 6.84 -2.39 -0.02 1.30 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.42 7.68 7.43 -92.71 -0.69 6.99 16 36 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 37 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 38 H 0.04 1.89 8.10 -2.38 -0.02 1.87 16 39 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 42 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -72.09 338.62 -0.16 -72.26 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.30 Total: 10.38 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 4.93 Total: -12.24 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -5.76 Total: -85.76 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.66 Total: -32.12 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.09 -0.16 -72.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600421052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.363 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds