Wall clock time and date at job start Mon Mar 30 2020 05:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47023 * 2 1 4 4 C 1.42894 * 114.00171 * 179.97438 * 3 2 1 5 5 C 1.53777 * 113.61747 * 149.99755 * 4 3 2 6 6 C 1.53781 * 87.08410 * 89.19994 * 5 4 3 7 7 N 1.46501 * 113.61693 * 139.97915 * 6 5 4 8 8 C 1.34775 * 119.99848 * 156.53117 * 7 6 5 9 9 O 1.21286 * 120.00064 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99977 * 180.02562 * 8 7 6 11 11 H 1.08996 * 109.47188 * 40.00225 * 10 8 7 12 12 N 1.46905 * 109.47125 * 160.00003 * 10 8 7 13 13 C 1.53001 * 109.47213 * 279.99847 * 10 8 7 14 14 C 1.52995 * 109.47332 * 174.99878 * 13 10 8 15 15 C 1.50694 * 109.47452 * 180.02562 * 14 13 10 16 16 H 1.08004 * 119.99671 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00375 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99760 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00357 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46997 * 59.99466 * 19 17 15 21 21 H 1.48492 * 109.47393 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46831 * 299.99896 * 19 17 15 23 23 C 1.53783 * 87.17006 * 25.39184 * 6 5 4 24 24 H 1.08997 * 109.47226 * 300.00403 * 1 2 3 25 25 H 1.09008 * 109.47143 * 60.00474 * 1 2 3 26 26 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47226 * 239.99597 * 2 1 3 28 28 H 1.08999 * 109.47004 * 119.99477 * 2 1 3 29 29 H 1.09003 * 112.85269 * 18.80211 * 4 3 2 30 30 H 1.09002 * 113.61567 * 334.65269 * 5 4 3 31 31 H 1.09000 * 113.61794 * 203.74939 * 5 4 3 32 32 H 1.09001 * 113.61369 * 270.80604 * 6 5 4 33 33 H 0.96989 * 120.00034 * 336.53697 * 7 6 5 34 34 H 1.00901 * 110.99869 * 296.04907 * 12 10 8 35 35 H 1.00896 * 110.99543 * 60.00030 * 12 10 8 36 36 H 1.08997 * 109.47039 * 295.00606 * 13 10 8 37 37 H 1.09001 * 109.46723 * 55.00082 * 13 10 8 38 38 H 1.09001 * 109.46974 * 300.00562 * 14 13 10 39 39 H 1.09004 * 109.46840 * 59.99935 * 14 13 10 40 40 H 0.97001 * 119.99959 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.61445 * 89.15792 * 23 6 5 42 42 H 1.09002 * 113.61566 * 220.06181 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.9488 2.7251 -0.7039 6 6 3.8411 3.4324 0.6574 7 7 4.9545 4.3430 0.9354 8 6 4.7940 5.3563 1.8095 9 8 3.7281 5.5140 2.3661 10 6 5.9391 6.2934 2.0951 11 1 6.4698 6.5116 1.1684 12 7 5.4187 7.5424 2.6671 13 6 6.8987 5.6377 3.0901 14 6 8.1229 6.5346 3.2848 15 6 9.0683 5.8885 4.2644 16 1 8.8206 4.9338 4.7045 17 6 10.2491 6.5166 4.5997 18 7 10.5504 7.6793 4.0642 19 14 11.4207 5.7160 5.8145 20 1 11.8530 4.3962 5.2889 21 1 12.6088 6.5864 6.0034 22 1 10.7316 5.5287 7.1167 23 6 4.0024 2.0466 1.3043 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.9280 0.5457 -0.3228 30 1 3.2639 3.1180 -1.4554 31 1 4.9719 2.6339 -1.0687 32 1 2.8670 3.8873 0.8371 33 1 5.8070 4.2167 0.4905 34 1 4.8327 8.0272 2.0040 35 1 4.9222 7.3666 3.5276 36 1 6.3931 5.5004 4.0459 37 1 7.2159 4.6688 2.7044 38 1 8.6284 6.6718 2.3290 39 1 7.8057 7.5035 3.6705 40 1 11.3813 8.1210 4.2998 41 1 5.0402 1.7694 1.4895 42 1 3.3607 1.8922 2.1718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691629109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:26 Heat of formation + Delta-G solvation = -105.166008 kcal Electronic energy + Delta-G solvation = -20562.412307 eV Core-core repulsion = 17348.410898 eV Total energy + Delta-G solvation = -3214.001409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38186 -40.09102 -37.51079 -36.70489 -34.80348 -34.20433 -31.91908 -31.66709 -28.31137 -26.76201 -26.20800 -24.43269 -23.75169 -22.32579 -21.30900 -20.75132 -18.64610 -18.17671 -17.98701 -17.16623 -16.84512 -16.58571 -16.45904 -16.10077 -15.81341 -15.18001 -14.98899 -14.43616 -14.26239 -14.01173 -13.80850 -13.58315 -13.48283 -13.39998 -12.80688 -12.76712 -12.63413 -12.51232 -12.31223 -12.23350 -11.80831 -11.73488 -11.62387 -11.39718 -11.24338 -10.98248 -10.47902 -10.46281 -10.03971 -9.60545 -8.12803 -6.23117 1.42233 1.45174 1.50765 1.53367 2.22370 2.45553 2.59955 3.20080 3.47439 3.58014 3.59349 3.81702 3.89483 4.05722 4.13404 4.18874 4.26986 4.33535 4.39614 4.49727 4.70483 4.76026 4.79467 4.83142 4.94958 4.97049 4.98799 5.04094 5.10777 5.25896 5.26688 5.52704 5.58040 5.85818 5.99787 6.10602 6.31237 6.31466 6.47262 6.55908 6.95503 7.18491 7.44856 8.98221 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026645 B = 0.003165 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.611229 B = 8843.394987 C = 9458.986020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.393 6.393 4 C 0.071 3.929 5 C -0.131 4.131 6 C 0.116 3.884 7 N -0.705 5.705 8 C 0.488 3.512 9 O -0.587 6.587 10 C 0.085 3.915 11 H 0.113 0.887 12 N -0.820 5.820 13 C -0.080 4.080 14 C 0.039 3.961 15 C -0.544 4.544 16 H 0.056 0.944 17 C 0.001 3.999 18 N -0.930 5.930 19 Si 0.960 3.040 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.172 4.172 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.416 0.584 34 H 0.346 0.654 35 H 0.344 0.656 36 H 0.039 0.961 37 H 0.069 0.931 38 H -0.004 1.004 39 H 0.004 0.996 40 H 0.262 0.738 41 H 0.106 0.894 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.141 -16.096 -12.739 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.313 6.313 4 C 0.013 3.987 5 C -0.169 4.169 6 C 0.011 3.989 7 N -0.356 5.356 8 C 0.273 3.727 9 O -0.468 6.468 10 C -0.031 4.031 11 H 0.130 0.870 12 N -0.348 5.348 13 C -0.119 4.119 14 C 0.002 3.998 15 C -0.582 4.582 16 H 0.074 0.926 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.785 3.215 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.211 4.211 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.254 0.746 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.014 0.986 39 H 0.022 0.978 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.127 -15.455 -12.304 24.881 hybrid contribution 0.130 -0.584 0.583 0.835 sum -14.997 -16.039 -11.722 24.891 Atomic orbital electron populations 1.21783 0.93304 1.03378 1.02469 1.22737 0.96074 0.82716 1.01101 1.87888 1.20508 1.28258 1.94604 1.22905 0.81384 0.98898 0.95524 1.23591 1.03630 0.94172 0.95481 1.22496 0.90529 0.88382 0.97463 1.46054 1.16145 1.29270 1.44113 1.22436 0.90167 0.82052 0.78023 1.90636 1.29894 1.74296 1.51926 1.21665 0.92582 0.88455 1.00383 0.86957 1.58991 1.45736 1.20726 1.09380 1.21378 0.95211 0.98706 0.96582 1.18823 0.91216 0.94780 0.94955 1.21707 1.04593 1.05792 1.26136 0.92615 1.25908 0.99995 0.95468 0.98295 1.70098 1.24968 1.16747 1.45190 0.85589 0.78027 0.78585 0.79347 1.18963 1.20968 1.19720 1.24039 1.02497 0.96122 0.98414 0.93013 0.92133 0.89018 0.91553 0.92886 0.87632 0.89932 0.85696 0.89794 0.74649 0.84093 0.84264 0.94208 0.91200 0.98608 0.97760 0.92931 0.87551 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.05 0.68 6.50 71.98 0.47 1.14 16 3 O -0.39 -7.71 10.27 -148.98 -1.53 -9.24 16 4 C 0.07 1.13 4.38 31.18 0.14 1.27 16 5 C -0.13 -1.96 7.66 31.12 0.24 -1.72 16 6 C 0.12 2.62 4.15 45.52 0.19 2.81 16 7 N -0.70 -16.73 5.36 -440.03 -2.36 -19.09 16 8 C 0.49 15.40 7.07 87.66 0.62 16.02 16 9 O -0.59 -22.60 15.87 -3.05 -0.05 -22.65 16 10 C 0.08 2.84 3.15 44.17 0.14 2.98 16 11 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 12 N -0.82 -28.50 8.44 -171.80 -1.45 -29.95 16 13 C -0.08 -3.24 4.78 30.59 0.15 -3.09 16 14 C 0.04 2.05 4.86 29.84 0.15 2.20 16 15 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 16 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 17 C 0.00 0.07 5.46 84.66 0.46 0.53 16 18 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 19 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.17 -3.44 7.72 31.18 0.24 -3.19 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.11 1.13 7.87 -2.39 -0.02 1.11 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.12 1.23 8.11 -2.39 -0.02 1.22 16 32 H 0.08 2.45 7.50 -2.39 -0.02 2.43 16 33 H 0.42 7.58 8.71 -92.72 -0.81 6.78 16 34 H 0.35 10.39 9.06 -89.69 -0.81 9.58 16 35 H 0.34 12.36 8.58 -89.70 -0.77 11.59 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.00 0.23 7.75 -2.38 -0.02 0.21 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.28 350.55 -0.69 -72.97 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -1.37 Total: 30.88 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 3.76 Total: -12.83 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -3.52 Total: -105.53 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.58 Total: -31.89 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.28 -0.69 -72.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691629109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.194 kcal (2) G-P(sol) polarization free energy of solvation -72.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds