Wall clock time and date at job start Mon Mar 30 2020 04:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47152 * 2 1 4 4 C 1.52999 * 109.47388 * 240.00026 * 2 1 3 5 5 O 1.42893 * 109.47417 * 65.00066 * 4 2 1 6 6 C 1.42893 * 114.00588 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47720 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00006 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00416 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99900 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.38957 * 119.99490 * 180.02562 * 10 9 7 13 13 N 1.31404 * 120.00450 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99486 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46690 * 90.00093 * 14 12 10 16 16 H 1.48500 * 109.46615 * 209.99677 * 14 12 10 17 17 H 1.48501 * 109.47087 * 329.99694 * 14 12 10 18 18 C 1.52999 * 109.46759 * 120.00137 * 2 1 3 19 19 H 1.09002 * 109.46416 * 180.02562 * 18 2 1 20 20 C 1.53039 * 109.46260 * 299.99756 * 18 2 1 21 21 C 1.53123 * 109.31189 * 179.17811 * 20 18 2 22 22 C 1.53129 * 109.15931 * 302.40768 * 21 20 18 23 23 C 1.53036 * 109.30712 * 57.59477 * 22 21 20 24 24 N 1.46842 * 109.46826 * 60.05347 * 18 2 1 25 25 H 1.08993 * 109.47669 * 299.99930 * 1 2 3 26 26 H 1.09004 * 109.46533 * 60.00385 * 1 2 3 27 27 H 1.09005 * 109.46643 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47277 * 184.99965 * 4 2 1 29 29 H 1.09007 * 109.47050 * 305.00068 * 4 2 1 30 30 H 1.09002 * 109.47218 * 299.99803 * 6 5 4 31 31 H 1.09006 * 109.47376 * 59.99508 * 6 5 4 32 32 H 0.96997 * 120.00046 * 0.02562 * 9 7 6 33 33 H 0.96996 * 120.00352 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.50563 * 299.14144 * 20 18 2 35 35 H 1.09003 * 109.50107 * 59.22125 * 20 18 2 36 36 H 1.09000 * 109.52057 * 62.27355 * 21 20 18 37 37 H 1.08995 * 109.52240 * 182.46183 * 21 20 18 38 38 H 1.09000 * 109.46579 * 297.65836 * 22 21 20 39 39 H 1.08997 * 109.53656 * 177.57437 * 22 21 20 40 40 H 1.09001 * 109.45883 * 180.82826 * 23 22 21 41 41 H 1.08995 * 109.46584 * 60.85899 * 23 22 21 42 42 H 1.00903 * 110.99924 * 54.14425 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.6621 0.0167 -2.4130 6 6 2.0915 -0.5744 -3.6410 7 6 1.6416 0.2830 -4.7958 8 8 1.0143 1.3001 -4.5876 9 7 1.9361 -0.0803 -6.0598 10 6 1.5262 0.6995 -7.1103 11 1 0.9670 1.6046 -6.9249 12 6 1.8294 0.3246 -8.4135 13 7 2.5085 -0.7775 -8.6391 14 14 1.2716 1.3875 -9.8448 15 1 2.3207 2.3922 -10.1535 16 1 1.0399 0.5316 -11.0360 17 1 0.0108 2.0836 -9.4826 18 6 2.0399 -0.7213 1.2492 19 1 3.1299 -0.7209 1.2494 20 6 1.5297 0.0003 2.4987 21 6 2.0249 -0.7361 3.7465 22 6 1.5439 -2.1890 3.6966 23 6 2.0538 -2.8471 2.4125 24 7 1.5514 -2.1061 1.2485 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7994 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 3.1789 -0.6499 -3.6473 31 1 1.6577 -1.5699 -3.7364 32 1 2.4373 -0.8939 -6.2263 33 1 2.7204 -1.0390 -9.5488 34 1 1.9053 1.0235 2.5069 35 1 0.4397 0.0128 2.4921 36 1 3.1143 -0.7144 3.7739 37 1 1.6275 -0.2506 4.6377 38 1 0.4542 -2.2115 3.7092 39 1 1.9291 -2.7304 4.5607 40 1 1.7004 -3.8772 2.3674 41 1 3.1437 -2.8365 2.4070 42 1 1.7949 -2.5749 0.3888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697243121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:41 Heat of formation + Delta-G solvation = -101.576933 kcal Electronic energy + Delta-G solvation = -20779.266164 eV Core-core repulsion = 17565.420388 eV Total energy + Delta-G solvation = -3213.845776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.54279 -38.38498 -36.96276 -34.32891 -33.81908 -32.21101 -31.25305 -29.58471 -27.78315 -26.13646 -24.40140 -24.13739 -22.99183 -20.57655 -19.51402 -19.17467 -17.94673 -16.90704 -16.22330 -15.93856 -15.59123 -15.11124 -14.70908 -14.55391 -14.18510 -14.17339 -13.80460 -13.56594 -13.31198 -13.02269 -12.61982 -12.51032 -12.09616 -11.67880 -11.57310 -11.52341 -11.36617 -11.08007 -11.01297 -10.88452 -10.64271 -10.41122 -10.38794 -10.28573 -10.21124 -9.52828 -9.28864 -8.61287 -8.33657 -7.97921 -6.42121 -3.83123 3.18582 3.27045 3.32963 3.70628 3.88593 3.94298 4.23375 4.52919 4.63773 4.69685 4.85112 4.98499 5.06640 5.16439 5.20021 5.23912 5.35474 5.39762 5.41375 5.50322 5.53608 5.61289 5.66040 5.71629 5.81833 5.85285 5.88811 5.94876 5.96752 6.09926 6.21912 6.24070 6.37147 6.60872 6.85819 7.16475 7.47315 7.55353 8.05433 8.60958 9.17436 9.51819 10.03866 10.75742 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.055330 B = 0.002852 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.933685 B = 9815.101372 C =10112.962167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.082 0.918 4 C 0.062 3.938 5 O -0.354 6.354 6 C 0.055 3.945 7 C 0.443 3.557 8 O -0.575 6.575 9 N -0.562 5.562 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.932 3.068 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.096 3.904 19 H 0.037 0.963 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.117 4.117 23 C 0.058 3.942 24 N -0.683 5.683 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.393 0.607 33 H 0.272 0.728 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.027 0.973 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 -5.686 21.524 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.100 0.900 4 C -0.016 4.016 5 O -0.272 6.272 6 C -0.026 4.026 7 C 0.228 3.772 8 O -0.458 6.458 9 N -0.199 5.199 10 C -0.428 4.428 11 H 0.122 0.878 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.193 1.193 18 C -0.013 4.013 19 H 0.055 0.945 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.072 4.072 24 N -0.317 5.317 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.226 0.774 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.045 0.955 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.587 -4.746 21.793 22.312 hybrid contribution 1.339 -0.555 -1.177 1.867 sum 1.925 -5.302 20.616 21.374 Atomic orbital electron populations 1.21702 0.93611 1.02488 1.01535 1.21140 0.98036 0.99696 0.91267 0.89996 1.22554 0.97652 0.95068 0.86316 1.88024 1.78174 1.48748 1.12262 1.22157 0.98669 0.96451 0.85302 1.19561 0.85950 0.88105 0.83583 1.90545 1.43789 1.27084 1.84431 1.41753 1.49841 1.24425 1.03927 1.19714 1.32775 1.06258 0.84050 0.87819 1.25270 0.96976 0.96883 0.98795 1.69607 1.39420 1.23156 1.22181 0.85832 0.79246 0.79212 0.79864 1.20367 1.20895 1.19343 1.21452 0.96233 0.88726 0.94917 0.94514 1.21677 1.02242 0.98286 0.92961 1.21586 1.00388 0.95859 0.98097 1.21583 1.01749 0.95662 0.96528 1.21900 0.96772 0.97383 0.91097 1.60333 1.63729 1.02377 1.05251 0.93090 0.91929 0.91891 0.94173 0.93341 0.92053 0.91901 0.77394 0.91830 0.91577 0.90424 0.92500 0.91881 0.91118 0.91940 0.90886 0.95483 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.58 37.16 0.32 -1.43 16 2 C -0.08 -1.00 2.51 -90.62 -0.23 -1.23 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.06 0.83 4.85 37.16 0.18 1.01 16 5 O -0.35 -6.69 9.41 -55.14 -0.52 -7.21 16 6 C 0.05 1.03 6.42 36.00 0.23 1.26 16 7 C 0.44 11.07 7.86 -10.99 -0.09 10.98 16 8 O -0.58 -16.79 16.08 -14.36 -0.23 -17.02 16 9 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 10 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 11 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 14 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.10 0.95 2.25 -67.72 -0.15 0.80 16 19 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 20 C -0.11 -1.02 5.04 -26.65 -0.13 -1.16 16 21 C -0.12 -0.94 6.01 -26.60 -0.16 -1.10 16 22 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 23 C 0.06 0.46 6.55 -3.83 -0.03 0.44 16 24 N -0.68 -6.41 5.73 -106.76 -0.61 -7.02 16 25 H 0.05 0.58 6.41 -51.93 -0.33 0.25 16 26 H 0.06 0.97 7.82 -51.93 -0.41 0.56 16 27 H 0.06 0.80 7.61 -51.93 -0.39 0.40 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.59 6.79 -51.92 -0.35 0.24 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.75 6.39 -51.93 -0.33 0.42 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.34 3.11 6.89 -39.29 -0.27 2.84 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -32.10 334.73 -8.13 -40.23 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.00 Total: 7.96 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.46 Total: 0.42 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.05 Total: -45.61 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.75 Total: -24.23 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.10 -8.13 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697243121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.348 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds