Wall clock time and date at job start Mon Mar 30 2020 04:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47152 * 2 1 4 4 C 1.52999 * 109.47388 * 240.00026 * 2 1 3 5 5 O 1.42893 * 109.47417 * 65.00066 * 4 2 1 6 6 C 1.42893 * 114.00588 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47720 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00006 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00416 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99900 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.38957 * 119.99490 * 180.02562 * 10 9 7 13 13 N 1.31404 * 120.00450 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99486 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46690 * 90.00093 * 14 12 10 16 16 H 1.48500 * 109.46615 * 209.99677 * 14 12 10 17 17 H 1.48501 * 109.47087 * 329.99694 * 14 12 10 18 18 C 1.52999 * 109.46759 * 120.00137 * 2 1 3 19 19 H 1.09002 * 109.46416 * 180.02562 * 18 2 1 20 20 C 1.53039 * 109.46260 * 299.99756 * 18 2 1 21 21 C 1.53123 * 109.31189 * 179.17811 * 20 18 2 22 22 C 1.53129 * 109.15931 * 302.40768 * 21 20 18 23 23 C 1.53036 * 109.30712 * 57.59477 * 22 21 20 24 24 N 1.46842 * 109.46826 * 60.05347 * 18 2 1 25 25 H 1.08993 * 109.47669 * 299.99930 * 1 2 3 26 26 H 1.09004 * 109.46533 * 60.00385 * 1 2 3 27 27 H 1.09005 * 109.46643 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47277 * 184.99965 * 4 2 1 29 29 H 1.09007 * 109.47050 * 305.00068 * 4 2 1 30 30 H 1.09002 * 109.47218 * 299.99803 * 6 5 4 31 31 H 1.09006 * 109.47376 * 59.99508 * 6 5 4 32 32 H 0.96997 * 120.00046 * 0.02562 * 9 7 6 33 33 H 0.96996 * 120.00352 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.50563 * 299.14144 * 20 18 2 35 35 H 1.09003 * 109.50107 * 59.22125 * 20 18 2 36 36 H 1.09000 * 109.52057 * 62.27355 * 21 20 18 37 37 H 1.08995 * 109.52240 * 182.46183 * 21 20 18 38 38 H 1.09000 * 109.46579 * 297.65836 * 22 21 20 39 39 H 1.08997 * 109.53656 * 177.57437 * 22 21 20 40 40 H 1.09001 * 109.45883 * 180.82826 * 23 22 21 41 41 H 1.08995 * 109.46584 * 60.85899 * 23 22 21 42 42 H 1.00903 * 110.99924 * 54.14425 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.6621 0.0167 -2.4130 6 6 2.0915 -0.5744 -3.6410 7 6 1.6416 0.2830 -4.7958 8 8 1.0143 1.3001 -4.5876 9 7 1.9361 -0.0803 -6.0598 10 6 1.5262 0.6995 -7.1103 11 1 0.9670 1.6046 -6.9249 12 6 1.8294 0.3246 -8.4135 13 7 2.5085 -0.7775 -8.6391 14 14 1.2716 1.3875 -9.8448 15 1 2.3207 2.3922 -10.1535 16 1 1.0399 0.5316 -11.0360 17 1 0.0108 2.0836 -9.4826 18 6 2.0399 -0.7213 1.2492 19 1 3.1299 -0.7209 1.2494 20 6 1.5297 0.0003 2.4987 21 6 2.0249 -0.7361 3.7465 22 6 1.5439 -2.1890 3.6966 23 6 2.0538 -2.8471 2.4125 24 7 1.5514 -2.1061 1.2485 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7994 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 3.1789 -0.6499 -3.6473 31 1 1.6577 -1.5699 -3.7364 32 1 2.4373 -0.8939 -6.2263 33 1 2.7204 -1.0390 -9.5488 34 1 1.9053 1.0235 2.5069 35 1 0.4397 0.0128 2.4921 36 1 3.1143 -0.7144 3.7739 37 1 1.6275 -0.2506 4.6377 38 1 0.4542 -2.2115 3.7092 39 1 1.9291 -2.7304 4.5607 40 1 1.7004 -3.8772 2.3674 41 1 3.1437 -2.8365 2.4070 42 1 1.7949 -2.5749 0.3888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697243121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:41 Heat of formation + Delta-G solvation = -123.638628 kcal Electronic energy + Delta-G solvation = -20780.222831 eV Core-core repulsion = 17565.420388 eV Total energy + Delta-G solvation = -3214.802442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52148 -40.05301 -38.36849 -36.01751 -35.17554 -33.34649 -32.88759 -30.49214 -29.27517 -27.38726 -26.17536 -24.98206 -23.75401 -21.54121 -21.18156 -20.10352 -19.97296 -18.07294 -17.68861 -17.23020 -16.80659 -16.62499 -16.14609 -15.70575 -15.48298 -15.21138 -15.19463 -14.70919 -14.43181 -14.06476 -13.72056 -13.61248 -13.54505 -13.17758 -13.01835 -12.86976 -12.50683 -12.46007 -12.24516 -12.12247 -11.89740 -11.72596 -11.55995 -11.40536 -11.20864 -11.09914 -10.58043 -10.36915 -10.07062 -9.31647 -8.50296 -5.99941 1.36911 1.41456 1.54464 1.96321 2.19228 2.49463 3.15932 3.23876 3.43002 3.78277 3.96939 3.98396 4.05979 4.12081 4.19747 4.35442 4.37975 4.39485 4.41910 4.45170 4.52692 4.66979 4.77629 4.82048 4.91345 4.94709 5.02398 5.12227 5.13311 5.22876 5.29423 5.35878 5.38058 5.50345 5.56796 5.90155 6.15529 6.22577 6.48241 6.56892 7.07911 7.47908 8.04066 8.67084 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.055330 B = 0.002852 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.933685 B = 9815.101372 C =10112.962167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 H 0.070 0.930 4 C 0.057 3.943 5 O -0.388 6.388 6 C 0.067 3.933 7 C 0.434 3.566 8 O -0.626 6.626 9 N -0.565 5.565 10 C -0.338 4.338 11 H 0.078 0.922 12 C -0.010 4.010 13 N -0.917 5.917 14 Si 0.995 3.005 15 H -0.269 1.269 16 H -0.268 1.268 17 H -0.274 1.274 18 C 0.105 3.895 19 H 0.041 0.959 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.116 4.116 23 C 0.057 3.943 24 N -0.691 5.691 25 H 0.062 0.938 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -6.897 22.189 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.019 4.019 5 O -0.307 6.307 6 C -0.012 4.012 7 C 0.221 3.779 8 O -0.513 6.513 9 N -0.203 5.203 10 C -0.467 4.467 11 H 0.096 0.904 12 C -0.210 4.210 13 N -0.558 5.558 14 Si 0.818 3.182 15 H -0.195 1.195 16 H -0.192 1.192 17 H -0.199 1.199 18 C -0.004 4.004 19 H 0.059 0.941 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.072 4.072 24 N -0.325 5.325 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.451 -6.000 22.469 23.302 hybrid contribution 1.080 -0.205 -1.333 1.727 sum 2.531 -6.206 21.136 22.173 Atomic orbital electron populations 1.21616 0.94349 1.02210 1.00411 1.21136 0.97337 0.99431 0.92018 0.91181 1.22819 0.98958 0.95464 0.84657 1.87991 1.78934 1.50441 1.13363 1.21997 1.00295 0.95700 0.83244 1.20675 0.84549 0.87995 0.84673 1.90504 1.45915 1.29570 1.85333 1.41792 1.49914 1.24417 1.04182 1.19670 1.34657 1.06670 0.85715 0.90423 1.26068 0.96367 0.97993 1.00567 1.69656 1.39072 1.23744 1.23294 0.84903 0.78629 0.77824 0.76827 1.19457 1.19208 1.19851 1.21328 0.96258 0.88988 0.93862 0.94143 1.21684 1.01725 0.98584 0.93294 1.21578 1.00582 0.95924 0.97624 1.21589 1.01263 0.95637 0.96933 1.21970 0.97007 0.97663 0.90603 1.60340 1.64031 1.02185 1.05931 0.91912 0.95279 0.91667 0.92363 0.91638 0.89099 0.89009 0.76610 0.91054 0.91418 0.91239 0.92145 0.91046 0.91925 0.90450 0.90025 0.95098 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.58 71.98 0.62 -2.68 16 2 C -0.08 -1.89 2.51 -10.79 -0.03 -1.92 16 3 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.06 1.46 4.85 71.98 0.35 1.81 16 5 O -0.39 -14.51 9.41 -129.95 -1.22 -15.73 16 6 C 0.07 2.46 6.42 71.23 0.46 2.92 16 7 C 0.43 22.01 7.86 87.66 0.69 22.70 16 8 O -0.63 -37.91 16.08 15.96 0.26 -37.65 16 9 N -0.56 -29.76 5.29 -306.98 -1.62 -31.39 16 10 C -0.34 -19.60 9.68 84.04 0.81 -18.79 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 13 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 14 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 C 0.11 1.91 2.25 44.94 0.10 2.02 16 19 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 20 C -0.12 -1.90 5.04 30.65 0.15 -1.75 16 21 C -0.12 -1.60 6.01 30.68 0.18 -1.41 16 22 C -0.12 -1.49 6.09 30.65 0.19 -1.30 16 23 C 0.06 0.77 6.55 86.32 0.57 1.33 16 24 N -0.69 -11.61 5.73 -491.69 -2.82 -14.43 16 25 H 0.06 1.42 6.41 -2.39 -0.02 1.41 16 26 H 0.03 0.92 7.82 -2.39 -0.02 0.90 16 27 H 0.06 1.62 7.61 -2.38 -0.02 1.60 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.45 6.79 -2.38 -0.02 1.43 16 30 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 32 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 33 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.26 6.39 -2.39 -0.02 1.25 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.34 5.49 6.89 -89.69 -0.62 4.87 16 Total: -1.00 -70.15 334.73 1.13 -69.02 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.34 Total: 31.24 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 4.56 Total: 2.87 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -4.16 Total: -94.90 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.97 Total: -53.38 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -70.15 1.13 -69.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697243121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.614 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds