Wall clock time and date at job start Mon Mar 30 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00431 * 2 1 4 4 C 1.52991 * 109.47422 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47073 * 65.41362 * 4 3 2 6 6 C 1.37104 * 120.00374 * 269.15584 * 5 4 3 7 7 H 1.07992 * 119.99791 * 49.86820 * 6 5 4 8 8 C 1.38950 * 119.99898 * 229.87452 * 6 5 4 9 9 N 1.31414 * 119.99481 * 200.57259 * 8 6 5 10 10 Si 1.86797 * 120.00323 * 20.57182 * 8 6 5 11 11 H 1.48499 * 109.47294 * 89.05660 * 10 8 6 12 12 H 1.48502 * 109.47077 * 209.05461 * 10 8 6 13 13 H 1.48494 * 109.47209 * 329.05209 * 10 8 6 14 14 C 1.34783 * 120.00335 * 89.15718 * 5 4 3 15 15 O 1.21298 * 119.99211 * 5.03156 * 14 5 4 16 16 C 1.50693 * 120.00661 * 185.02864 * 14 5 4 17 17 H 1.09004 * 109.53269 * 308.71648 * 16 14 5 18 18 C 1.53110 * 109.50505 * 188.61493 * 16 14 5 19 19 C 1.53126 * 109.21291 * 182.43296 * 18 16 14 20 20 C 1.53040 * 109.27422 * 57.62734 * 19 18 16 21 21 N 1.46856 * 109.52126 * 300.81727 * 20 19 18 22 22 C 1.46895 * 110.99602 * 185.84003 * 21 20 19 23 23 C 1.46844 * 111.19351 * 61.74750 * 21 20 19 24 24 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46821 * 300.00421 * 1 2 3 26 26 H 1.09001 * 109.46627 * 59.99530 * 1 2 3 27 27 H 1.09002 * 109.46728 * 59.99859 * 3 2 1 28 28 H 1.08995 * 109.47069 * 300.00372 * 3 2 1 29 29 H 1.09004 * 109.47468 * 305.41361 * 4 3 2 30 30 H 1.08999 * 109.47445 * 185.41432 * 4 3 2 31 31 H 0.96998 * 120.00038 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.52551 * 62.50137 * 18 16 14 33 33 H 1.09000 * 109.52705 * 302.37144 * 18 16 14 34 34 H 1.08998 * 109.50091 * 177.55906 * 19 18 16 35 35 H 1.08993 * 109.50261 * 297.64410 * 19 18 16 36 36 H 1.08995 * 109.46563 * 60.83554 * 20 19 18 37 37 H 1.09000 * 109.46393 * 180.80581 * 20 19 18 38 38 H 1.09003 * 109.47048 * 63.96009 * 22 21 20 39 39 H 1.09008 * 109.47103 * 183.95163 * 22 21 20 40 40 H 1.08995 * 109.47880 * 303.95336 * 22 21 20 41 41 H 1.08993 * 109.46862 * 58.27123 * 23 21 20 42 42 H 1.09011 * 109.45597 * 178.24310 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9774 0.5729 -1.2550 6 6 4.1153 -0.7883 -1.3432 7 1 3.3142 -1.4345 -1.0163 8 6 5.2860 -1.3363 -1.8532 9 7 5.2885 -2.5664 -2.3156 10 14 6.8560 -0.3247 -1.8813 11 1 7.5917 -0.5169 -0.6058 12 1 7.7080 -0.7645 -3.0153 13 1 6.5166 1.1116 -2.0454 14 6 4.2484 1.3483 -2.3237 15 8 4.2149 2.5564 -2.2203 16 6 4.5929 0.7145 -3.6467 17 1 5.3881 -0.0174 -3.5041 18 6 5.0621 1.7952 -4.6245 19 6 5.3522 1.1530 -5.9840 20 6 4.0923 0.4451 -6.4875 21 7 3.6853 -0.5806 -5.5185 22 6 2.5610 -1.3739 -6.0327 23 6 3.3559 0.0181 -4.2187 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.8503 0.5624 0.8384 30 1 3.9785 2.1758 0.0976 31 1 6.1055 -2.9489 -2.6719 32 1 5.9689 2.2637 -4.2421 33 1 4.2823 2.5485 -4.7366 34 1 5.6450 1.9247 -6.6959 35 1 6.1601 0.4289 -5.8794 36 1 3.2893 1.1726 -6.6052 37 1 4.2996 -0.0254 -7.4487 38 1 2.8786 -1.9216 -6.9200 39 1 2.2341 -2.0789 -5.2683 40 1 1.7360 -0.7101 -6.2914 41 1 2.5564 0.7477 -4.3470 42 1 3.0284 -0.7625 -3.5319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705940630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:17 Heat of formation + Delta-G solvation = -62.550167 kcal Electronic energy + Delta-G solvation = -23086.987341 eV Core-core repulsion = 19874.833893 eV Total energy + Delta-G solvation = -3212.153448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.60361 -37.79429 -36.98515 -34.66190 -33.00621 -32.10657 -30.60839 -29.01917 -26.20721 -25.96159 -24.41308 -23.65424 -22.35755 -21.57804 -19.84744 -18.65797 -17.26061 -16.02985 -15.93509 -15.38602 -15.06837 -14.73926 -14.58813 -14.31137 -14.15936 -13.91935 -13.37377 -13.01014 -12.72813 -12.64554 -12.49170 -12.13948 -11.74175 -11.58595 -11.40789 -11.28359 -11.19198 -11.09180 -10.67720 -10.61057 -10.50865 -10.24529 -10.02567 -9.76075 -9.56779 -9.18410 -8.87646 -8.47395 -7.75128 -7.50123 -6.35221 -4.04261 3.16836 3.28474 3.36528 3.77980 4.19030 4.30998 4.42472 4.63829 5.03651 5.31964 5.38255 5.46396 5.54321 5.61216 5.71527 5.76883 5.82790 5.84082 5.86254 5.95107 5.98038 6.02107 6.05382 6.12863 6.26508 6.27910 6.31544 6.37872 6.51126 6.58879 6.60368 6.62675 6.96891 7.05903 7.64531 7.65768 7.68645 7.82400 7.85147 8.69676 9.09082 9.40785 9.80831 10.73232 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.009219 C = 0.008007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.712738 B = 3036.507929 C = 3496.226568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.463 5.463 6 C -0.344 4.344 7 H 0.107 0.893 8 C 0.082 3.918 9 N -0.844 5.844 10 Si 0.846 3.154 11 H -0.281 1.281 12 H -0.278 1.278 13 H -0.256 1.256 14 C 0.496 3.504 15 O -0.601 6.601 16 C -0.088 4.088 17 H 0.098 0.902 18 C -0.105 4.105 19 C -0.117 4.117 20 C 0.056 3.944 21 N -0.535 5.535 22 C 0.033 3.967 23 C 0.082 3.918 24 H 0.080 0.920 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.275 0.725 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.015 0.985 41 H 0.017 0.983 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 3.788 -3.314 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.183 5.183 6 C -0.471 4.471 7 H 0.125 0.875 8 C -0.127 4.127 9 N -0.478 5.478 10 Si 0.672 3.328 11 H -0.208 1.208 12 H -0.203 1.203 13 H -0.180 1.180 14 C 0.286 3.714 15 O -0.486 6.486 16 C -0.109 4.109 17 H 0.116 0.884 18 C -0.143 4.143 19 C -0.155 4.155 20 C -0.072 4.072 21 N -0.259 5.259 22 C -0.116 4.116 23 C -0.046 4.046 24 H 0.099 0.901 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.436 3.698 -3.254 6.629 hybrid contribution 0.082 1.070 -0.078 1.075 sum -4.355 4.768 -3.332 7.266 Atomic orbital electron populations 1.22651 0.82841 1.02063 0.98905 1.88096 1.17950 1.27472 1.95091 1.22949 0.95608 0.84686 0.99081 1.21509 0.91289 0.99165 0.89595 1.43629 1.60421 1.07216 1.07070 1.18974 1.02277 0.79312 1.46511 0.87516 1.25507 0.97446 0.95132 0.94594 1.69700 1.28642 1.14570 1.34894 0.87391 0.84721 0.82614 0.78110 1.20784 1.20318 1.18021 1.20444 0.78762 0.86397 0.85844 1.90499 1.57725 1.14899 1.85462 1.21189 1.00029 0.97342 0.92376 0.88435 1.21452 1.01443 0.97368 0.94055 1.21605 0.97931 0.99172 0.96792 1.22080 0.96680 0.93127 0.95339 1.61813 1.36959 1.24084 1.03073 1.22269 0.91422 0.97337 1.00553 1.21887 0.94232 0.98385 0.90104 0.90117 0.95065 0.94858 0.93942 0.93716 0.90173 0.90356 0.91484 0.92185 0.91786 0.91875 0.91349 0.95534 0.91406 0.92031 0.90914 0.96609 0.96517 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.13 9.82 -35.23 -0.35 -7.48 16 3 C 0.05 1.01 6.28 37.15 0.23 1.24 16 4 C 0.11 2.25 5.83 -4.05 -0.02 2.23 16 5 N -0.46 -11.16 1.97 -114.82 -0.23 -11.39 16 6 C -0.34 -8.88 7.33 -14.93 -0.11 -8.99 16 7 H 0.11 3.00 7.54 -52.49 -0.40 2.60 16 8 C 0.08 2.14 4.09 -17.47 -0.07 2.07 16 9 N -0.84 -22.88 13.96 55.50 0.77 -22.11 16 10 Si 0.85 20.81 24.90 -169.99 -4.23 16.58 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.26 -6.48 5.37 56.52 0.30 -6.18 16 14 C 0.50 12.19 4.50 -10.99 -0.05 12.14 16 15 O -0.60 -15.56 15.50 5.54 0.09 -15.48 16 16 C -0.09 -2.01 1.17 -91.69 -0.11 -2.12 16 17 H 0.10 2.40 2.97 -51.93 -0.15 2.25 16 18 C -0.11 -2.12 4.66 -26.61 -0.12 -2.24 16 19 C -0.12 -1.98 6.10 -26.65 -0.16 -2.14 16 20 C 0.06 0.91 5.46 -3.83 -0.02 0.89 16 21 N -0.54 -10.16 4.91 -242.95 -1.19 -11.35 16 22 C 0.03 0.52 9.62 60.06 0.58 1.10 16 23 C 0.08 1.74 4.57 -3.83 -0.02 1.72 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.61 8.03 -51.93 -0.42 1.19 16 30 H 0.08 1.59 7.38 -51.93 -0.38 1.21 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.21 8.02 -51.92 -0.42 0.80 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 2.63 6.39 -51.92 -0.33 2.30 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -29.53 323.65 -6.26 -35.79 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.24 Total: 3.07 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 1.24 Total: 7.49 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.65 Total: -44.85 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.26 Total: -22.96 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.23 Total: 16.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.53 -6.26 -35.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705940630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.761 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds