Wall clock time and date at job start Mon Mar 30 2020 05:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00431 * 2 1 4 4 C 1.52991 * 109.47422 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47073 * 65.41362 * 4 3 2 6 6 C 1.37104 * 120.00374 * 269.15584 * 5 4 3 7 7 H 1.07992 * 119.99791 * 49.86820 * 6 5 4 8 8 C 1.38950 * 119.99898 * 229.87452 * 6 5 4 9 9 N 1.31414 * 119.99481 * 200.57259 * 8 6 5 10 10 Si 1.86797 * 120.00323 * 20.57182 * 8 6 5 11 11 H 1.48499 * 109.47294 * 89.05660 * 10 8 6 12 12 H 1.48502 * 109.47077 * 209.05461 * 10 8 6 13 13 H 1.48494 * 109.47209 * 329.05209 * 10 8 6 14 14 C 1.34783 * 120.00335 * 89.15718 * 5 4 3 15 15 O 1.21298 * 119.99211 * 5.03156 * 14 5 4 16 16 C 1.50693 * 120.00661 * 185.02864 * 14 5 4 17 17 H 1.09004 * 109.53269 * 308.71648 * 16 14 5 18 18 C 1.53110 * 109.50505 * 188.61493 * 16 14 5 19 19 C 1.53126 * 109.21291 * 182.43296 * 18 16 14 20 20 C 1.53040 * 109.27422 * 57.62734 * 19 18 16 21 21 N 1.46856 * 109.52126 * 300.81727 * 20 19 18 22 22 C 1.46895 * 110.99602 * 185.84003 * 21 20 19 23 23 C 1.46844 * 111.19351 * 61.74750 * 21 20 19 24 24 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46821 * 300.00421 * 1 2 3 26 26 H 1.09001 * 109.46627 * 59.99530 * 1 2 3 27 27 H 1.09002 * 109.46728 * 59.99859 * 3 2 1 28 28 H 1.08995 * 109.47069 * 300.00372 * 3 2 1 29 29 H 1.09004 * 109.47468 * 305.41361 * 4 3 2 30 30 H 1.08999 * 109.47445 * 185.41432 * 4 3 2 31 31 H 0.96998 * 120.00038 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.52551 * 62.50137 * 18 16 14 33 33 H 1.09000 * 109.52705 * 302.37144 * 18 16 14 34 34 H 1.08998 * 109.50091 * 177.55906 * 19 18 16 35 35 H 1.08993 * 109.50261 * 297.64410 * 19 18 16 36 36 H 1.08995 * 109.46563 * 60.83554 * 20 19 18 37 37 H 1.09000 * 109.46393 * 180.80581 * 20 19 18 38 38 H 1.09003 * 109.47048 * 63.96009 * 22 21 20 39 39 H 1.09008 * 109.47103 * 183.95163 * 22 21 20 40 40 H 1.08995 * 109.47880 * 303.95336 * 22 21 20 41 41 H 1.08993 * 109.46862 * 58.27123 * 23 21 20 42 42 H 1.09011 * 109.45597 * 178.24310 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9774 0.5729 -1.2550 6 6 4.1153 -0.7883 -1.3432 7 1 3.3142 -1.4345 -1.0163 8 6 5.2860 -1.3363 -1.8532 9 7 5.2885 -2.5664 -2.3156 10 14 6.8560 -0.3247 -1.8813 11 1 7.5917 -0.5169 -0.6058 12 1 7.7080 -0.7645 -3.0153 13 1 6.5166 1.1116 -2.0454 14 6 4.2484 1.3483 -2.3237 15 8 4.2149 2.5564 -2.2203 16 6 4.5929 0.7145 -3.6467 17 1 5.3881 -0.0174 -3.5041 18 6 5.0621 1.7952 -4.6245 19 6 5.3522 1.1530 -5.9840 20 6 4.0923 0.4451 -6.4875 21 7 3.6853 -0.5806 -5.5185 22 6 2.5610 -1.3739 -6.0327 23 6 3.3559 0.0181 -4.2187 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.8503 0.5624 0.8384 30 1 3.9785 2.1758 0.0976 31 1 6.1055 -2.9489 -2.6719 32 1 5.9689 2.2637 -4.2421 33 1 4.2823 2.5485 -4.7366 34 1 5.6450 1.9247 -6.6959 35 1 6.1601 0.4289 -5.8794 36 1 3.2893 1.1726 -6.6052 37 1 4.2996 -0.0254 -7.4487 38 1 2.8786 -1.9216 -6.9200 39 1 2.2341 -2.0789 -5.2683 40 1 1.7360 -0.7101 -6.2914 41 1 2.5564 0.7477 -4.3470 42 1 3.0284 -0.7625 -3.5319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705940630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:16 Heat of formation + Delta-G solvation = -83.444980 kcal Electronic energy + Delta-G solvation = -23087.893408 eV Core-core repulsion = 19874.833893 eV Total energy + Delta-G solvation = -3213.059515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39645 -39.32039 -38.50028 -36.58595 -34.60943 -33.94788 -32.23413 -30.61179 -27.59957 -27.30177 -26.36079 -25.25460 -23.86523 -23.12494 -21.53977 -20.41418 -19.14429 -17.71959 -17.54663 -16.91407 -16.70288 -16.37890 -16.21432 -15.83201 -15.79302 -15.44150 -15.04710 -14.70747 -14.52574 -14.27681 -14.09398 -13.55717 -13.20527 -13.11316 -13.02964 -12.92307 -12.79126 -12.67089 -12.46939 -12.23403 -11.99820 -11.87261 -11.70628 -11.45703 -11.26660 -10.87719 -10.60774 -10.35905 -9.44984 -9.18170 -8.41640 -6.10796 1.18573 1.28705 1.35775 1.86248 2.18973 2.63624 2.93890 3.07720 3.14340 3.86067 3.89079 3.95252 4.16253 4.24887 4.27146 4.33197 4.44106 4.46366 4.53817 4.55823 4.58779 4.63048 4.65069 4.71761 4.78664 4.84723 4.90844 4.94545 4.98137 5.02751 5.04999 5.07552 5.32272 5.40899 5.79509 5.90421 6.15962 6.30166 6.35216 6.59772 7.05527 7.42780 7.84313 8.69894 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.009219 C = 0.008007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.712738 B = 3036.507929 C = 3496.226568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.063 3.937 4 C 0.099 3.901 5 N -0.469 5.469 6 C -0.333 4.333 7 H 0.079 0.921 8 C 0.061 3.939 9 N -0.870 5.870 10 Si 0.889 3.111 11 H -0.281 1.281 12 H -0.270 1.270 13 H -0.268 1.268 14 C 0.488 3.512 15 O -0.618 6.618 16 C -0.093 4.093 17 H 0.080 0.920 18 C -0.103 4.103 19 C -0.112 4.112 20 C 0.055 3.945 21 N -0.555 5.555 22 C 0.034 3.966 23 C 0.098 3.902 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.277 0.723 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.015 0.985 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 4.528 -4.408 8.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.014 4.014 4 C -0.024 4.024 5 N -0.189 5.189 6 C -0.460 4.460 7 H 0.097 0.903 8 C -0.146 4.146 9 N -0.505 5.505 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.196 1.196 13 H -0.193 1.193 14 C 0.278 3.722 15 O -0.504 6.504 16 C -0.114 4.114 17 H 0.098 0.902 18 C -0.142 4.142 19 C -0.150 4.150 20 C -0.072 4.072 21 N -0.280 5.280 22 C -0.114 4.114 23 C -0.030 4.030 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.033 0.967 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.710 4.430 -4.343 7.789 hybrid contribution 0.067 0.835 0.292 0.887 sum -4.643 5.265 -4.051 8.105 Atomic orbital electron populations 1.22858 0.80414 1.03276 1.00316 1.88040 1.20703 1.28004 1.95367 1.22816 0.93756 0.84727 1.00143 1.21719 0.93329 0.99102 0.88231 1.43723 1.60272 1.06633 1.08261 1.18625 1.01457 0.79837 1.46097 0.90288 1.25759 0.98875 0.95570 0.94387 1.69754 1.29211 1.15605 1.35965 0.86740 0.82784 0.80886 0.78133 1.20793 1.19552 1.19322 1.20851 0.78442 0.86322 0.86590 1.90469 1.58646 1.15472 1.85856 1.21235 1.00028 0.97808 0.92342 0.90239 1.21458 1.00760 0.96626 0.95306 1.21628 0.98016 0.99809 0.95545 1.22193 0.96476 0.92896 0.95637 1.61800 1.38286 1.25083 1.02792 1.22300 0.91213 0.97110 1.00762 1.21542 0.93398 0.96965 0.91126 0.89132 0.92412 0.94555 0.90208 0.95104 0.89778 0.89933 0.91228 0.93154 0.91910 0.88310 0.92282 0.94617 0.88436 0.89594 0.92597 0.95072 0.96719 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -15.47 9.82 -148.98 -1.46 -16.94 16 3 C 0.06 2.28 6.28 71.98 0.45 2.73 16 4 C 0.10 4.12 5.83 86.38 0.50 4.62 16 5 N -0.47 -22.89 1.97 -635.56 -1.25 -24.15 16 6 C -0.33 -17.58 7.33 84.04 0.62 -16.96 16 7 H 0.08 4.61 7.54 -2.91 -0.02 4.59 16 8 C 0.06 3.21 4.09 84.93 0.35 3.56 16 9 N -0.87 -47.81 13.96 21.66 0.30 -47.50 16 10 Si 0.89 43.25 24.90 68.60 1.71 44.96 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 13 H -0.27 -13.53 5.37 99.48 0.53 -12.99 16 14 C 0.49 24.16 4.50 87.65 0.39 24.55 16 15 O -0.62 -32.06 15.50 -3.08 -0.05 -32.11 16 16 C -0.09 -4.24 1.17 -11.49 -0.01 -4.25 16 17 H 0.08 3.93 2.97 -2.38 -0.01 3.92 16 18 C -0.10 -4.05 4.66 30.67 0.14 -3.91 16 19 C -0.11 -3.50 6.10 30.65 0.19 -3.31 16 20 C 0.06 1.64 5.46 86.32 0.47 2.11 16 21 N -0.55 -20.31 4.91 -922.55 -4.53 -24.84 16 22 C 0.03 1.02 9.62 127.69 1.23 2.25 16 23 C 0.10 4.20 4.57 86.33 0.39 4.60 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 3.38 8.03 -2.39 -0.02 3.36 16 30 H 0.08 3.33 7.38 -2.39 -0.02 3.31 16 31 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 2.35 8.12 -2.39 -0.02 2.33 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 1.85 8.02 -2.38 -0.02 1.83 16 40 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 3.75 6.39 -2.38 -0.02 3.73 16 Total: -1.00 -63.85 323.65 1.49 -62.36 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.81 Total: 20.20 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 5.97 Total: 18.02 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -5.48 Total: -96.49 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -1.51 Total: -49.04 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.71 Total: 44.96 kcal Total: -63.85 1.49 -62.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705940630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.087 kcal (2) G-P(sol) polarization free energy of solvation -63.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds