Wall clock time and date at job start Mon Mar 30 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00397 * 2 1 4 4 O 1.20832 * 119.99653 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00391 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47513 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47525 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47210 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.46820 * 180.02562 * 8 7 6 10 10 C 1.46894 * 111.00248 * 294.30004 * 9 8 7 11 11 C 1.53239 * 109.34082 * 172.74967 * 10 9 8 12 12 N 1.47073 * 108.52521 * 53.83173 * 11 10 9 13 13 C 1.36937 * 120.88523 * 128.83353 * 12 11 10 14 14 H 1.07994 * 120.00186 * 206.57069 * 13 12 11 15 15 C 1.38808 * 119.99651 * 26.56480 * 13 12 11 16 16 N 1.31622 * 119.99975 * 17.02270 * 15 13 12 17 17 Si 1.86801 * 119.99897 * 197.01506 * 15 13 12 18 18 H 1.48504 * 109.47057 * 90.00861 * 17 15 13 19 19 H 1.48506 * 109.47071 * 210.00313 * 17 15 13 20 20 H 1.48499 * 109.47291 * 330.00447 * 17 15 13 21 21 C 1.47083 * 118.23297 * 308.81899 * 12 11 10 22 22 C 1.46908 * 110.99759 * 169.99890 * 9 8 7 23 23 H 1.09001 * 109.47294 * 59.99266 * 1 2 3 24 24 H 1.08994 * 109.47553 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46503 * 299.99727 * 1 2 3 26 26 H 1.09000 * 109.47263 * 59.99968 * 5 3 2 27 27 H 1.09004 * 109.46721 * 300.00263 * 5 3 2 28 28 H 1.08997 * 109.46590 * 300.00113 * 6 5 3 29 29 H 1.09000 * 109.47100 * 59.99601 * 6 5 3 30 30 H 1.09004 * 109.46863 * 300.00089 * 7 6 5 31 31 H 1.09001 * 109.46655 * 60.00066 * 7 6 5 32 32 H 1.08997 * 109.46923 * 300.00305 * 8 7 6 33 33 H 1.09000 * 109.47082 * 59.99986 * 8 7 6 34 34 H 1.08998 * 109.49262 * 292.71065 * 10 9 8 35 35 H 1.09005 * 109.49135 * 52.78767 * 10 9 8 36 36 H 1.09005 * 109.62680 * 294.11752 * 11 10 9 37 37 H 1.09006 * 109.62580 * 173.54291 * 11 10 9 38 38 H 0.97007 * 119.99426 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.62829 * 291.46950 * 21 12 11 40 40 H 1.09007 * 109.78842 * 170.98843 * 21 12 11 41 41 H 1.08994 * 109.49301 * 307.21175 * 22 9 8 42 42 H 1.08997 * 109.49036 * 67.29379 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0003 2.7420 0.0002 7 6 5.5281 2.8221 0.0002 8 6 5.9620 4.2893 0.0004 9 7 7.4289 4.3661 -0.0002 10 6 7.9847 3.8298 1.2493 11 6 9.5113 3.7598 1.1369 12 7 10.0130 5.0879 0.7528 13 6 11.0183 5.6912 1.4603 14 1 11.0964 6.7682 1.4762 15 6 11.9369 4.9183 2.1572 16 7 12.0610 3.6369 1.8834 17 14 12.9972 5.6970 3.4834 18 1 12.3008 5.6042 4.7918 19 1 14.2961 4.9815 3.5623 20 1 13.2375 7.1241 3.1506 21 6 9.4064 5.7507 -0.4117 22 6 7.8839 5.7425 -0.2383 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 3.9557 0.7809 -0.8908 27 1 3.9564 0.7805 0.8892 28 1 3.6101 3.2366 -0.8893 29 1 3.6109 3.2356 0.8906 30 1 5.9178 2.3275 0.8900 31 1 5.9178 2.3284 -0.8900 32 1 5.5722 4.7834 -0.8895 33 1 5.5722 4.7833 0.8904 34 1 7.7106 4.4818 2.0787 35 1 7.5866 2.8303 1.4250 36 1 9.7894 3.0294 0.3769 37 1 9.9364 3.4717 2.0984 38 1 12.7032 3.0969 2.3702 39 1 9.6744 5.2119 -1.3205 40 1 9.7618 6.7791 -0.4775 41 1 7.4129 6.1301 -1.1415 42 1 7.6112 6.3678 0.6118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707540856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:09 Heat of formation + Delta-G solvation = -68.156572 kcal Electronic energy + Delta-G solvation = -20670.185556 eV Core-core repulsion = 17457.788996 eV Total energy + Delta-G solvation = -3212.396560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70136 -38.25440 -36.92883 -35.46684 -33.81545 -31.45710 -29.87983 -29.70885 -27.88865 -26.20893 -23.92823 -22.77411 -22.30761 -20.86112 -20.60291 -19.04377 -17.77975 -16.97502 -16.78331 -16.67995 -15.51781 -15.13674 -14.51300 -14.34778 -14.10187 -13.70153 -13.58670 -13.42415 -13.12271 -13.00546 -12.64870 -12.34217 -12.20525 -11.72985 -11.36240 -11.25406 -11.19359 -11.11258 -10.97972 -10.74996 -10.70550 -10.57826 -10.32651 -10.22623 -9.98921 -9.69200 -9.52742 -8.47940 -7.75506 -6.63480 -5.75421 -3.16391 1.95777 2.45062 3.39397 3.46117 3.47454 4.33929 4.47978 4.52540 4.75934 4.77314 4.80318 4.85631 5.14429 5.22715 5.25750 5.40919 5.44962 5.50613 5.55670 5.70773 5.84257 5.91288 5.98379 6.01193 6.11349 6.19735 6.25179 6.29270 6.38697 6.41597 6.60434 6.74604 6.97478 7.29566 7.48364 7.67261 7.70049 7.75753 7.86267 8.46491 9.24325 9.87788 10.46529 11.33364 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.002897 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.319551 B = 9663.819604 C =10053.936665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.509 6.509 5 C -0.113 4.113 6 C -0.107 4.107 7 C -0.116 4.116 8 C 0.055 3.945 9 N -0.534 5.534 10 C 0.033 3.967 11 C 0.178 3.822 12 N -0.596 5.596 13 C -0.250 4.250 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.904 5.904 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.149 3.851 22 C 0.045 3.955 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.063 0.937 36 H 0.026 0.974 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.025 0.975 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.536 -6.347 -3.954 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.396 6.396 5 C -0.150 4.150 6 C -0.145 4.145 7 C -0.153 4.153 8 C -0.073 4.073 9 N -0.259 5.259 10 C -0.096 4.096 11 C 0.052 3.948 12 N -0.320 5.320 13 C -0.380 4.380 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.549 5.549 17 Si 0.733 3.267 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.022 3.978 22 C -0.085 4.085 23 H 0.081 0.919 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -19.446 -6.436 -4.263 20.923 hybrid contribution -0.038 0.849 1.381 1.622 sum -19.484 -5.588 -2.882 20.473 Atomic orbital electron populations 1.23251 0.76492 1.03626 1.02525 1.86525 1.23393 1.33820 1.84201 1.24048 0.92548 0.81148 0.71983 1.90675 1.67381 1.36373 1.45198 1.21478 0.86635 1.00758 1.06177 1.21417 0.96334 0.93141 1.03604 1.21594 0.93161 0.97370 1.03221 1.22053 0.89278 0.95956 1.00025 1.61964 1.06376 1.21258 1.36293 1.22943 1.00002 0.97868 0.88800 1.20865 0.86393 0.86652 1.00910 1.44130 1.40133 1.18184 1.29510 1.19212 1.03920 0.90855 1.24000 0.91657 1.25024 0.97302 0.96204 1.01321 1.70039 1.37254 1.05987 1.41583 0.86281 0.79610 0.78581 0.82248 1.21538 1.21752 1.20491 1.20971 0.89429 0.96557 0.90846 1.22602 0.98935 0.88110 0.98845 0.91935 0.88144 0.91946 0.87381 0.87456 0.91064 0.91234 0.91441 0.90814 0.91507 0.95649 0.95898 0.91889 0.95618 0.89451 0.93659 0.95705 0.92709 0.92115 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.43 10.56 -39.26 -0.41 -3.85 16 3 C 0.46 4.83 7.96 36.00 0.29 5.11 16 4 O -0.51 -6.81 15.73 -18.76 -0.30 -7.10 16 5 C -0.11 -0.96 5.81 -27.88 -0.16 -1.12 16 6 C -0.11 -1.08 4.50 -26.73 -0.12 -1.20 16 7 C -0.12 -1.36 5.14 -26.73 -0.14 -1.49 16 8 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 9 N -0.53 -9.62 4.63 -234.33 -1.08 -10.70 16 10 C 0.03 0.65 5.46 -3.70 -0.02 0.63 16 11 C 0.18 4.35 5.42 -3.61 -0.02 4.33 16 12 N -0.60 -15.41 3.04 -172.01 -0.52 -15.93 16 13 C -0.25 -6.99 9.63 -15.06 -0.15 -7.14 16 14 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 15 C 0.00 -0.01 4.94 -17.43 -0.09 -0.09 16 16 N -0.90 -26.48 11.15 55.49 0.62 -25.86 16 17 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.15 3.24 6.69 -3.60 -0.02 3.22 16 22 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 23 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 26 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.89 7.97 -51.93 -0.41 0.47 16 33 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 1.10 6.16 -51.93 -0.32 0.78 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 1.14 7.96 -51.93 -0.41 0.73 16 41 H 0.06 0.97 7.99 -51.93 -0.41 0.55 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -32.11 337.23 -8.30 -40.40 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -7.25 Total: -4.02 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 0.60 Total: 5.11 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.99 Total: -52.49 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.71 Total: -10.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.11 -8.30 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707540856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.754 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds