Wall clock time and date at job start Mon Mar 30 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00397 * 2 1 4 4 O 1.20832 * 119.99653 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00391 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47513 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47525 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47210 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.46820 * 180.02562 * 8 7 6 10 10 C 1.46894 * 111.00248 * 294.30004 * 9 8 7 11 11 C 1.53239 * 109.34082 * 172.74967 * 10 9 8 12 12 N 1.47073 * 108.52521 * 53.83173 * 11 10 9 13 13 C 1.36937 * 120.88523 * 128.83353 * 12 11 10 14 14 H 1.07994 * 120.00186 * 206.57069 * 13 12 11 15 15 C 1.38808 * 119.99651 * 26.56480 * 13 12 11 16 16 N 1.31622 * 119.99975 * 17.02270 * 15 13 12 17 17 Si 1.86801 * 119.99897 * 197.01506 * 15 13 12 18 18 H 1.48504 * 109.47057 * 90.00861 * 17 15 13 19 19 H 1.48506 * 109.47071 * 210.00313 * 17 15 13 20 20 H 1.48499 * 109.47291 * 330.00447 * 17 15 13 21 21 C 1.47083 * 118.23297 * 308.81899 * 12 11 10 22 22 C 1.46908 * 110.99759 * 169.99890 * 9 8 7 23 23 H 1.09001 * 109.47294 * 59.99266 * 1 2 3 24 24 H 1.08994 * 109.47553 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46503 * 299.99727 * 1 2 3 26 26 H 1.09000 * 109.47263 * 59.99968 * 5 3 2 27 27 H 1.09004 * 109.46721 * 300.00263 * 5 3 2 28 28 H 1.08997 * 109.46590 * 300.00113 * 6 5 3 29 29 H 1.09000 * 109.47100 * 59.99601 * 6 5 3 30 30 H 1.09004 * 109.46863 * 300.00089 * 7 6 5 31 31 H 1.09001 * 109.46655 * 60.00066 * 7 6 5 32 32 H 1.08997 * 109.46923 * 300.00305 * 8 7 6 33 33 H 1.09000 * 109.47082 * 59.99986 * 8 7 6 34 34 H 1.08998 * 109.49262 * 292.71065 * 10 9 8 35 35 H 1.09005 * 109.49135 * 52.78767 * 10 9 8 36 36 H 1.09005 * 109.62680 * 294.11752 * 11 10 9 37 37 H 1.09006 * 109.62580 * 173.54291 * 11 10 9 38 38 H 0.97007 * 119.99426 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.62829 * 291.46950 * 21 12 11 40 40 H 1.09007 * 109.78842 * 170.98843 * 21 12 11 41 41 H 1.08994 * 109.49301 * 307.21175 * 22 9 8 42 42 H 1.08997 * 109.49036 * 67.29379 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0003 2.7420 0.0002 7 6 5.5281 2.8221 0.0002 8 6 5.9620 4.2893 0.0004 9 7 7.4289 4.3661 -0.0002 10 6 7.9847 3.8298 1.2493 11 6 9.5113 3.7598 1.1369 12 7 10.0130 5.0879 0.7528 13 6 11.0183 5.6912 1.4603 14 1 11.0964 6.7682 1.4762 15 6 11.9369 4.9183 2.1572 16 7 12.0610 3.6369 1.8834 17 14 12.9972 5.6970 3.4834 18 1 12.3008 5.6042 4.7918 19 1 14.2961 4.9815 3.5623 20 1 13.2375 7.1241 3.1506 21 6 9.4064 5.7507 -0.4117 22 6 7.8839 5.7425 -0.2383 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 3.9557 0.7809 -0.8908 27 1 3.9564 0.7805 0.8892 28 1 3.6101 3.2366 -0.8893 29 1 3.6109 3.2356 0.8906 30 1 5.9178 2.3275 0.8900 31 1 5.9178 2.3284 -0.8900 32 1 5.5722 4.7834 -0.8895 33 1 5.5722 4.7833 0.8904 34 1 7.7106 4.4818 2.0787 35 1 7.5866 2.8303 1.4250 36 1 9.7894 3.0294 0.3769 37 1 9.9364 3.4717 2.0984 38 1 12.7032 3.0969 2.3702 39 1 9.6744 5.2119 -1.3205 40 1 9.7618 6.7791 -0.4775 41 1 7.4129 6.1301 -1.1415 42 1 7.6112 6.3678 0.6118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707540856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:09 Heat of formation + Delta-G solvation = -88.464027 kcal Electronic energy + Delta-G solvation = -20671.066154 eV Core-core repulsion = 17457.788996 eV Total energy + Delta-G solvation = -3213.277157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47895 -39.77650 -37.74026 -36.82504 -35.21999 -33.23093 -31.62021 -30.86379 -28.79595 -27.66457 -25.39350 -24.35212 -23.80644 -21.92457 -21.43550 -20.79522 -18.71217 -18.55737 -17.71468 -17.45610 -17.01387 -16.41151 -16.21848 -15.65868 -15.34529 -15.26131 -14.95583 -14.84854 -14.51097 -14.22198 -13.54965 -13.51045 -13.31679 -12.95951 -12.88987 -12.63147 -12.61433 -12.34495 -12.18962 -12.14832 -11.98817 -11.85585 -11.80157 -11.62294 -11.52723 -11.42534 -11.15979 -10.58337 -9.23394 -8.67507 -7.87275 -5.31995 1.17944 1.46702 1.47884 1.57049 1.79381 2.50899 3.02935 3.27692 3.69743 3.75872 3.90091 4.02462 4.27428 4.28866 4.30782 4.33101 4.37269 4.48362 4.50005 4.60736 4.68879 4.70174 4.74190 4.78158 4.79631 4.88819 4.92029 5.06303 5.08264 5.22714 5.33875 5.39548 5.40634 5.49432 5.61368 5.70057 6.22436 6.33408 6.38504 6.72680 7.13848 7.84503 8.38746 9.19504 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.002897 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.319551 B = 9663.819604 C =10053.936665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.460 3.540 4 O -0.544 6.544 5 C -0.109 4.109 6 C -0.098 4.098 7 C -0.107 4.107 8 C 0.055 3.945 9 N -0.542 5.542 10 C 0.050 3.950 11 C 0.185 3.815 12 N -0.616 5.616 13 C -0.264 4.264 14 H 0.066 0.934 15 C -0.052 4.052 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.269 1.269 21 C 0.144 3.856 22 C 0.054 3.946 23 H 0.061 0.939 24 H 0.130 0.870 25 H 0.059 0.941 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.024 0.976 34 H 0.013 0.987 35 H 0.088 0.912 36 H 0.000 1.000 37 H 0.056 0.944 38 H 0.251 0.749 39 H 0.017 0.983 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.869 -6.476 -4.133 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.306 3.694 4 O -0.434 6.434 5 C -0.147 4.147 6 C -0.136 4.136 7 C -0.145 4.145 8 C -0.072 4.072 9 N -0.267 5.267 10 C -0.079 4.079 11 C 0.059 3.941 12 N -0.341 5.341 13 C -0.395 4.395 14 H 0.084 0.916 15 C -0.248 4.248 16 N -0.581 5.581 17 Si 0.797 3.203 18 H -0.212 1.212 19 H -0.220 1.220 20 H -0.194 1.194 21 C 0.018 3.982 22 C -0.075 4.075 23 H 0.079 0.921 24 H 0.148 0.852 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.106 0.894 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -20.810 -6.565 -4.460 22.272 hybrid contribution 0.328 0.872 1.364 1.652 sum -20.482 -5.693 -3.096 21.483 Atomic orbital electron populations 1.23513 0.75133 1.05582 1.02358 1.86518 1.24819 1.33219 1.83755 1.24406 0.93237 0.80897 0.70901 1.90663 1.68268 1.37466 1.47041 1.21505 0.85378 0.99843 1.07935 1.21270 0.94957 0.94348 1.03011 1.21504 0.94129 0.95555 1.03290 1.22164 0.86429 0.97930 1.00695 1.61930 1.08910 1.20869 1.34953 1.22623 0.96583 0.99282 0.89447 1.20642 0.89536 0.85702 0.98240 1.44434 1.40204 1.18621 1.30809 1.19535 1.04413 0.91143 1.24362 0.91607 1.25804 0.98859 0.96739 1.03367 1.70194 1.38063 1.07262 1.42595 0.85238 0.77589 0.78057 0.79382 1.21195 1.21982 1.19406 1.21126 0.91757 0.96209 0.89118 1.22462 0.96413 0.88545 1.00112 0.92064 0.85181 0.92222 0.85372 0.85815 0.91375 0.92194 0.91623 0.90437 0.89971 0.95771 0.96888 0.89430 0.98196 0.92584 0.94015 0.96508 0.92273 0.88826 0.96220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.37 -6.29 10.56 -51.42 -0.54 -6.83 16 3 C 0.46 8.95 7.96 71.23 0.57 9.51 16 4 O -0.54 -14.08 15.73 21.95 0.35 -13.74 16 5 C -0.11 -1.58 5.81 29.85 0.17 -1.41 16 6 C -0.10 -1.76 4.50 30.59 0.14 -1.63 16 7 C -0.11 -2.23 5.14 30.59 0.16 -2.08 16 8 C 0.06 1.44 4.96 86.30 0.43 1.86 16 9 N -0.54 -18.54 4.63 -895.28 -4.14 -22.69 16 10 C 0.05 1.93 5.46 86.38 0.47 2.40 16 11 C 0.18 9.22 5.42 86.35 0.47 9.68 16 12 N -0.62 -32.27 3.04 -698.13 -2.12 -34.39 16 13 C -0.26 -14.95 9.63 84.03 0.81 -14.14 16 14 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 15 C -0.05 -2.98 4.94 84.86 0.42 -2.56 16 16 N -0.93 -56.08 11.15 21.65 0.24 -55.84 16 17 Si 0.97 45.44 29.59 68.60 2.03 47.47 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 C 0.14 6.20 6.69 86.35 0.58 6.78 16 22 C 0.05 1.90 5.62 86.38 0.49 2.38 16 23 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 24 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 26 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 29 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 30 H 0.07 1.41 6.40 -2.38 -0.02 1.39 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.91 7.97 -2.39 -0.02 1.89 16 33 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 2.94 6.16 -2.38 -0.01 2.92 16 36 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 37 H 0.06 3.12 6.12 -2.38 -0.01 3.11 16 38 H 0.25 14.49 8.31 -92.70 -0.77 13.71 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 2.44 7.96 -2.38 -0.02 2.43 16 41 H 0.09 2.69 7.99 -2.39 -0.02 2.67 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -69.90 337.23 2.67 -67.23 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.97 Total: 6.44 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.89 Total: 12.35 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -6.02 Total: -112.92 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.20 Total: -20.57 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.90 2.67 -67.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707540856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.234 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds