Wall clock time and date at job start Mon Mar 30 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99884 * 2 1 4 4 H 1.08998 * 110.87715 * 330.70469 * 3 2 1 5 5 C 1.54916 * 110.98748 * 94.54857 * 3 2 1 6 6 N 1.47949 * 104.74525 * 155.17453 * 5 3 2 7 7 C 1.46894 * 110.99415 * 213.63554 * 6 5 3 8 8 C 1.53002 * 109.47442 * 286.84806 * 7 6 5 9 9 C 1.52994 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46810 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47123 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00262 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00377 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99383 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00319 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47333 * 89.99484 * 15 13 11 17 17 H 1.48499 * 109.47364 * 209.99656 * 15 13 11 18 18 H 1.48504 * 109.47110 * 329.99980 * 15 13 11 19 19 C 1.47445 * 108.58060 * 335.91373 * 6 5 3 20 20 C 1.52991 * 109.89092 * 120.39203 * 19 6 5 21 21 C 1.53001 * 110.02145 * 241.50564 * 19 6 5 22 22 N 1.46906 * 109.46800 * 60.81810 * 21 19 6 23 23 C 1.54325 * 107.23206 * 0.98362 * 19 6 5 24 24 H 1.09001 * 109.47217 * 60.00165 * 1 2 3 25 25 H 1.09007 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47475 * 299.99726 * 1 2 3 27 27 H 1.09002 * 110.37025 * 274.02678 * 5 3 2 28 28 H 1.08992 * 110.37241 * 36.36752 * 5 3 2 29 29 H 1.09005 * 109.47198 * 46.85118 * 7 6 5 30 30 H 1.09000 * 109.46828 * 166.84667 * 7 6 5 31 31 H 1.08996 * 109.47257 * 300.00104 * 8 7 6 32 32 H 1.09004 * 109.46537 * 59.99950 * 8 7 6 33 33 H 1.09005 * 109.47461 * 300.00224 * 9 8 7 34 34 H 1.08995 * 109.47275 * 60.00411 * 9 8 7 35 35 H 1.08999 * 109.47088 * 299.99437 * 10 9 8 36 36 H 1.09000 * 109.47592 * 60.00086 * 10 9 8 37 37 H 0.97001 * 119.99877 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.47468 * 300.77613 * 20 19 6 39 39 H 1.09006 * 109.47331 * 60.77656 * 20 19 6 40 40 H 1.09008 * 109.47231 * 180.77207 * 20 19 6 41 41 H 1.09002 * 109.46880 * 180.81504 * 21 19 6 42 42 H 1.08997 * 109.47298 * 300.82520 * 21 19 6 43 43 H 1.00903 * 111.00161 * 56.05097 * 22 21 19 44 44 H 1.00904 * 110.99840 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.70553 * 263.90281 * 23 19 6 46 46 H 1.08999 * 110.70336 * 140.66872 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3568 2.0215 -0.4983 5 6 2.3407 1.7657 1.4418 6 7 3.4275 2.7566 1.2810 7 6 4.3602 2.7033 2.4146 8 6 3.6985 3.3194 3.6490 9 6 4.6698 3.2632 4.8297 10 6 4.0079 3.8787 6.0642 11 6 4.9648 3.8241 7.2271 12 1 5.9468 3.3930 7.0987 13 6 4.5865 4.3233 8.4554 14 7 3.3906 4.8477 8.6119 15 14 5.7728 4.2562 9.8967 16 1 6.5908 5.4954 9.9227 17 1 5.0067 4.1422 11.1636 18 1 6.6644 3.0778 9.7495 19 6 4.1245 2.4873 0.0100 20 6 4.0371 3.7130 -0.9015 21 6 5.5907 2.1428 0.2794 22 7 5.6646 0.9380 1.1168 23 6 3.4168 1.2875 -0.6543 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.4679 2.2296 1.9014 28 1 2.6823 0.9215 2.0407 29 1 4.6211 1.6655 2.6220 30 1 5.2629 3.2627 2.1689 31 1 3.4377 4.3571 3.4416 32 1 2.7958 2.7599 3.8946 33 1 4.9303 2.2253 5.0370 34 1 5.5727 3.8224 4.5844 35 1 3.7472 4.9166 5.8573 36 1 3.1052 3.3193 6.3095 37 1 3.1245 5.1993 9.4759 38 1 2.9905 3.9479 -1.0951 39 1 4.5162 4.5626 -0.4148 40 1 4.5424 3.5017 -1.8439 41 1 6.1006 1.9597 -0.6665 42 1 6.0703 2.9742 0.7959 43 1 5.1708 0.1692 0.6887 44 1 6.6236 0.6893 1.3086 45 1 3.9370 0.3577 -0.4244 46 1 3.3423 1.4324 -1.7320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708949764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:50 Heat of formation + Delta-G solvation = -63.663165 kcal Electronic energy + Delta-G solvation = -21828.143830 eV Core-core repulsion = 18751.775213 eV Total energy + Delta-G solvation = -3076.368617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28302 -38.45697 -36.62707 -34.89972 -34.43271 -32.58836 -31.45715 -29.43717 -27.40565 -26.86822 -25.94255 -25.16584 -23.19506 -22.26806 -21.37664 -19.68750 -18.42350 -18.04299 -17.27806 -16.62157 -16.51642 -16.39026 -15.76430 -15.72077 -15.41734 -14.95121 -14.83968 -14.47503 -14.16407 -13.89225 -13.65238 -13.57709 -13.23179 -12.90370 -12.81748 -12.70111 -12.57420 -12.51745 -12.29066 -12.11503 -12.00949 -11.87806 -11.59641 -11.44007 -11.28511 -11.16241 -10.89747 -10.54781 -10.53114 -9.80039 -8.77034 -8.18560 -6.30374 1.39544 1.41979 1.53198 2.41864 2.59440 3.13720 3.25421 3.46812 3.64203 3.72860 4.00698 4.05899 4.24296 4.29256 4.36344 4.44080 4.50550 4.53694 4.58004 4.66622 4.71281 4.81213 4.84181 4.85412 4.88878 4.92782 4.98484 5.03294 5.09650 5.10752 5.22379 5.32445 5.37867 5.47281 5.50926 5.63475 5.80671 5.88418 6.12731 6.19303 6.27432 6.31398 6.33520 6.55305 6.86937 7.38768 8.93589 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.023645 B = 0.003618 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.892277 B = 7736.876135 C = 8306.534963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.083 3.917 4 H 0.083 0.917 5 C 0.027 3.973 6 N -0.520 5.520 7 C 0.061 3.939 8 C -0.105 4.105 9 C -0.090 4.090 10 C 0.024 3.976 11 C -0.544 4.544 12 H 0.060 0.940 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.262 1.262 19 C 0.096 3.904 20 C -0.126 4.126 21 C 0.052 3.948 22 N -0.854 5.854 23 C -0.122 4.122 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.048 0.952 35 H -0.014 1.014 36 H -0.015 1.015 37 H 0.263 0.737 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.341 0.659 44 H 0.350 0.650 45 H 0.077 0.923 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 -8.866 -24.221 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.025 3.975 4 H 0.101 0.899 5 C -0.101 4.101 6 N -0.245 5.245 7 C -0.067 4.067 8 C -0.143 4.143 9 C -0.128 4.128 10 C -0.013 4.013 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.792 3.208 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.186 1.186 19 C 0.006 3.994 20 C -0.184 4.184 21 C -0.079 4.079 22 N -0.387 5.387 23 C -0.160 4.160 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.005 0.995 36 H 0.003 0.997 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.096 0.904 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.513 -8.040 -23.582 24.920 hybrid contribution 0.679 -0.668 0.541 1.096 sum 0.167 -8.709 -23.041 24.632 Atomic orbital electron populations 1.22966 0.79696 1.03826 1.00658 1.87858 1.21285 1.27488 1.94911 1.23230 0.95265 0.84519 0.94508 0.89948 1.23405 0.95228 0.93864 0.97616 1.63561 1.11253 1.47474 1.02246 1.22581 0.93693 1.02140 0.88244 1.21536 0.97946 0.99846 0.94967 1.21320 0.97840 0.99483 0.94127 1.19020 0.94896 0.94101 0.93295 1.21743 1.01125 1.39217 0.96075 0.92160 1.26050 0.97125 0.94748 1.02173 1.70118 1.20978 1.41402 1.25120 0.85404 0.78584 0.79023 0.77777 1.19615 1.20630 1.18623 1.21866 0.92562 0.94881 0.90075 1.21734 1.02340 0.96183 0.98144 1.22257 0.95712 0.93953 0.96020 1.59121 1.20747 1.07872 1.50956 1.22886 0.93876 0.98344 1.00903 0.92610 0.88332 0.94183 0.91944 0.93920 0.89846 0.91328 0.93929 0.94437 0.93449 0.93290 0.99525 0.99657 0.92793 0.92314 0.93003 0.90509 0.93262 0.90710 0.84306 0.83591 0.90408 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.87 113.37 1.23 1.62 16 2 O -0.40 -8.58 10.51 -148.98 -1.57 -10.14 16 3 C 0.08 1.72 3.51 31.98 0.11 1.83 16 4 H 0.08 1.55 7.86 -2.39 -0.02 1.53 16 5 C 0.03 0.72 5.72 86.76 0.50 1.22 16 6 N -0.52 -13.75 4.76 -836.22 -3.98 -17.74 16 7 C 0.06 1.86 3.49 86.30 0.30 2.17 16 8 C -0.10 -4.04 5.31 30.59 0.16 -3.88 16 9 C -0.09 -4.02 5.15 30.59 0.16 -3.86 16 10 C 0.02 1.37 4.97 29.85 0.15 1.52 16 11 C -0.54 -32.69 9.11 25.60 0.23 -32.46 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 14 N -0.94 -59.43 13.29 21.45 0.28 -59.14 16 15 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 19 C 0.10 1.88 0.95 3.87 0.00 1.88 16 20 C -0.13 -2.15 8.70 71.98 0.63 -1.52 16 21 C 0.05 0.93 5.09 86.30 0.44 1.37 16 22 N -0.85 -15.65 6.55 -186.71 -1.22 -16.87 16 23 C -0.12 -2.11 5.61 31.78 0.18 -1.93 16 24 H 0.06 0.71 8.11 -2.39 -0.02 0.69 16 25 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.27 7.56 -2.39 -0.02 1.25 16 29 H 0.08 2.60 5.50 -2.38 -0.01 2.58 16 30 H 0.07 2.05 5.76 -2.39 -0.01 2.04 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.50 7.64 -2.38 -0.02 1.48 16 33 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 36 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 37 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 1.54 6.22 -2.39 -0.01 1.53 16 43 H 0.34 5.82 6.64 -89.69 -0.60 5.22 16 44 H 0.35 5.40 9.08 -89.69 -0.81 4.59 16 45 H 0.08 1.36 5.72 -2.39 -0.01 1.35 16 46 H 0.09 1.30 7.83 -2.39 -0.02 1.28 16 Total: -1.00 -69.31 351.58 -0.37 -69.68 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -0.46 Total: 18.24 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 4.55 Total: -31.81 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -4.92 Total: -93.75 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.57 Total: -10.14 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.31 -0.37 -69.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708949764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.013 kcal (2) G-P(sol) polarization free energy of solvation -69.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds