Wall clock time and date at job start Mon Mar 30 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99952 * 2 1 4 4 H 1.09000 * 110.64122 * 328.30614 * 3 2 1 5 5 C 1.54931 * 110.72172 * 91.45470 * 3 2 1 6 6 N 1.48541 * 103.22647 * 155.95077 * 5 3 2 7 7 C 1.46894 * 111.00214 * 200.28078 * 6 5 3 8 8 C 1.53003 * 109.47061 * 293.85049 * 7 6 5 9 9 C 1.52996 * 109.47190 * 185.07746 * 8 7 6 10 10 C 1.53003 * 109.47190 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47244 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99571 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00132 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99706 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99968 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47131 * 60.00571 * 15 13 11 17 17 H 1.48505 * 109.46806 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47210 * 300.00431 * 15 13 11 19 19 C 1.47903 * 105.81544 * 320.79390 * 6 5 3 20 20 C 1.53004 * 109.91470 * 265.97593 * 19 6 5 21 21 C 1.52998 * 109.91706 * 144.68250 * 19 6 5 22 22 N 1.46910 * 109.46926 * 59.99781 * 21 19 6 23 23 C 1.53987 * 107.06042 * 25.32788 * 19 6 5 24 24 H 1.09005 * 109.46938 * 300.00137 * 1 2 3 25 25 H 1.08998 * 109.47155 * 59.99704 * 1 2 3 26 26 H 1.08994 * 109.46965 * 180.02562 * 1 2 3 27 27 H 1.08997 * 110.67245 * 37.51880 * 5 3 2 28 28 H 1.09002 * 110.67051 * 274.38242 * 5 3 2 29 29 H 1.08997 * 109.47290 * 53.84954 * 7 6 5 30 30 H 1.08995 * 109.47600 * 173.85123 * 7 6 5 31 31 H 1.08994 * 109.47420 * 305.08181 * 8 7 6 32 32 H 1.09001 * 109.47026 * 65.07776 * 8 7 6 33 33 H 1.09003 * 109.47562 * 300.00558 * 9 8 7 34 34 H 1.09001 * 109.47112 * 60.00082 * 9 8 7 35 35 H 1.09004 * 109.46652 * 300.00366 * 10 9 8 36 36 H 1.09001 * 109.47026 * 60.00029 * 10 9 8 37 37 H 0.96996 * 119.99634 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.47269 * 64.14201 * 20 19 6 39 39 H 1.09000 * 109.46916 * 184.14277 * 20 19 6 40 40 H 1.08996 * 109.47060 * 304.13935 * 20 19 6 41 41 H 1.09000 * 109.47276 * 179.97438 * 21 19 6 42 42 H 1.08994 * 109.47461 * 299.99973 * 21 19 6 43 43 H 1.00896 * 110.99896 * 56.04698 * 22 21 19 44 44 H 1.00903 * 110.99689 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.31135 * 239.85524 * 23 19 6 46 46 H 1.09006 * 110.31189 * 117.69332 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3737 2.0095 -0.5359 5 6 2.2669 1.7913 1.4486 6 7 3.3528 2.7914 1.2844 7 6 4.0598 3.0140 2.5526 8 6 3.1111 3.6717 3.5567 9 6 3.8801 4.0187 4.8331 10 6 2.9316 4.6771 5.8370 11 6 3.6892 5.0195 7.0939 12 1 4.7421 4.7908 7.1690 13 6 3.0385 5.6256 8.1476 14 7 1.7566 5.9045 8.0559 15 14 3.9775 6.0493 9.7058 16 1 5.0815 6.9870 9.3790 17 1 3.0568 6.6884 10.6802 18 1 4.5403 4.8089 10.2974 19 6 4.2631 2.2335 0.2608 20 6 5.4001 1.4653 0.9377 21 6 4.8324 3.3622 -0.6012 22 7 5.5769 4.3002 0.2496 23 6 3.4298 1.2765 -0.6115 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 2.5967 0.9654 2.0787 28 1 1.3729 2.2586 1.8618 29 1 4.4035 2.0588 2.9494 30 1 4.9165 3.6657 2.3815 31 1 2.6972 4.5820 3.1231 32 1 2.3012 2.9827 3.7965 33 1 4.2941 3.1084 5.2668 34 1 4.6900 4.7078 4.5933 35 1 2.5181 5.5875 5.4029 36 1 2.1214 3.9884 6.0768 37 1 1.2987 6.3305 8.7973 38 1 4.9915 0.6076 1.4718 39 1 6.1057 1.1203 0.1819 40 1 5.9131 2.1209 1.6413 41 1 5.5021 2.9433 -1.3522 42 1 4.0162 3.8891 -1.0952 43 1 6.2990 3.8230 0.7682 44 1 5.9628 5.0557 -0.2967 45 1 3.8410 0.2680 -0.5657 46 1 3.4049 1.6291 -1.6426 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708949808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:54 Heat of formation + Delta-G solvation = -53.170963 kcal Electronic energy + Delta-G solvation = -21712.972581 eV Core-core repulsion = 18637.058940 eV Total energy + Delta-G solvation = -3075.913641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26548 -37.59112 -35.10629 -33.98307 -32.66176 -30.93649 -30.29954 -27.82758 -26.81532 -26.17009 -24.72732 -23.72687 -21.81353 -20.81287 -19.74916 -18.85138 -16.96834 -16.52371 -16.13123 -15.75589 -15.28231 -14.87968 -14.64042 -14.46064 -14.41703 -14.03511 -13.83916 -13.04593 -12.95718 -12.80824 -12.35297 -12.13811 -12.06736 -11.80764 -11.67121 -11.42113 -11.37592 -11.12330 -10.97499 -10.84370 -10.61677 -10.43558 -10.32776 -10.18850 -9.70805 -9.49461 -9.16467 -8.93107 -8.62251 -8.26041 -8.17901 -5.91298 -3.93123 3.38291 3.42143 3.43566 3.45055 4.16856 4.32822 4.48493 4.53118 4.71111 4.74724 4.94951 5.06909 5.12979 5.21629 5.23598 5.38307 5.43771 5.43986 5.48830 5.56809 5.57912 5.64119 5.70274 5.75215 5.82276 5.90057 5.96735 6.12220 6.15000 6.29095 6.50551 6.63947 6.91464 6.98531 7.06018 7.11351 7.22025 7.24407 7.37866 7.39352 7.78846 7.96826 8.10898 8.53841 9.14346 9.70172 11.20118 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.003691 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.708528 B = 7583.284283 C = 8489.461114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.075 0.925 5 C 0.012 3.988 6 N -0.486 5.486 7 C 0.050 3.950 8 C -0.111 4.111 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.053 0.947 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.093 3.907 20 C -0.176 4.176 21 C 0.087 3.913 22 N -0.838 5.838 23 C -0.117 4.117 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.027 0.973 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.023 0.977 42 H 0.076 0.924 43 H 0.336 0.664 44 H 0.338 0.662 45 H 0.080 0.920 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -10.181 -21.073 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.025 3.975 4 H 0.093 0.907 5 C -0.117 4.117 6 N -0.210 5.210 7 C -0.077 4.077 8 C -0.149 4.149 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.557 4.557 12 H 0.071 0.929 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.002 3.998 20 C -0.234 4.234 21 C -0.044 4.044 22 N -0.369 5.369 23 C -0.156 4.156 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.095 0.905 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.099 0.901 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.328 -9.639 -20.775 23.020 hybrid contribution 1.337 -0.597 0.707 1.626 sum 3.665 -10.236 -20.067 22.823 Atomic orbital electron populations 1.22784 0.80923 1.02623 1.00245 1.87884 1.19843 1.27534 1.94957 1.23036 0.94441 0.84172 0.95850 0.90679 1.23714 0.96935 0.94652 0.96372 1.64782 1.09005 1.39086 1.08171 1.22511 0.98084 0.99056 0.88074 1.21617 0.97827 1.00305 0.95193 1.21568 0.99051 0.99488 0.94403 1.19080 0.94280 0.95490 0.92669 1.21272 0.95812 1.38810 0.99808 0.92864 1.25027 0.94874 0.95973 0.98637 1.69964 1.08829 1.42827 1.32026 0.86685 0.79702 0.78606 0.83151 1.20270 1.21338 1.20331 1.21758 0.92513 0.92450 0.93036 1.22512 0.98872 1.00775 1.01278 1.21751 0.97014 0.92744 0.92896 1.58631 1.32976 1.13999 1.31265 1.22516 0.93904 1.00054 0.99122 0.93668 0.94055 0.89764 0.93009 0.89780 0.95438 0.89053 0.91703 0.93362 0.93985 0.93416 0.96635 0.96901 0.93068 0.92233 0.92556 0.91017 0.95904 0.90516 0.85054 0.84933 0.90114 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.88 101.05 1.10 1.37 16 2 O -0.38 -4.45 10.45 -35.23 -0.37 -4.82 16 3 C 0.08 0.93 3.51 -24.88 -0.09 0.84 16 4 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 5 C 0.01 0.15 5.39 -1.90 -0.01 0.14 16 6 N -0.49 -6.54 4.83 -215.00 -1.04 -7.58 16 7 C 0.05 0.76 3.42 -3.83 -0.01 0.75 16 8 C -0.11 -2.05 5.11 -26.73 -0.14 -2.19 16 9 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -15.25 9.11 -34.44 -0.31 -15.57 16 12 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 15 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.09 1.01 0.73 -130.53 -0.09 0.91 16 20 C -0.18 -1.81 6.64 37.16 0.25 -1.57 16 21 C 0.09 0.86 5.76 -3.82 -0.02 0.83 16 22 N -0.84 -8.54 7.99 -10.37 -0.08 -8.62 16 23 C -0.12 -1.18 5.98 -25.38 -0.15 -1.33 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.73 7.91 -51.93 -0.41 0.32 16 28 H 0.08 1.15 7.83 -51.93 -0.41 0.74 16 29 H 0.03 0.42 6.54 -51.93 -0.34 0.08 16 30 H 0.09 1.38 5.60 -51.93 -0.29 1.09 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 0.90 7.36 -51.93 -0.38 0.51 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.06 0.67 7.92 -51.93 -0.41 0.26 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.77 4.99 -51.93 -0.26 0.51 16 41 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.34 3.20 6.81 -39.29 -0.27 2.94 16 44 H 0.34 2.85 9.08 -39.29 -0.36 2.50 16 45 H 0.08 0.82 7.62 -51.93 -0.40 0.42 16 46 H 0.08 0.65 7.69 -51.93 -0.40 0.25 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -31.91 352.32 -8.84 -40.76 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.52 Total: 1.07 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 0.14 Total: -16.25 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.39 Total: -43.25 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.37 Total: -4.82 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.91 -8.84 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708949808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.415 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds