Wall clock time and date at job start Mon Mar 30 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99952 * 2 1 4 4 H 1.09000 * 110.64122 * 328.30614 * 3 2 1 5 5 C 1.54931 * 110.72172 * 91.45470 * 3 2 1 6 6 N 1.48541 * 103.22647 * 155.95077 * 5 3 2 7 7 C 1.46894 * 111.00214 * 200.28078 * 6 5 3 8 8 C 1.53003 * 109.47061 * 293.85049 * 7 6 5 9 9 C 1.52996 * 109.47190 * 185.07746 * 8 7 6 10 10 C 1.53003 * 109.47190 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47244 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99571 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00132 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99706 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99968 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47131 * 60.00571 * 15 13 11 17 17 H 1.48505 * 109.46806 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47210 * 300.00431 * 15 13 11 19 19 C 1.47903 * 105.81544 * 320.79390 * 6 5 3 20 20 C 1.53004 * 109.91470 * 265.97593 * 19 6 5 21 21 C 1.52998 * 109.91706 * 144.68250 * 19 6 5 22 22 N 1.46910 * 109.46926 * 59.99781 * 21 19 6 23 23 C 1.53987 * 107.06042 * 25.32788 * 19 6 5 24 24 H 1.09005 * 109.46938 * 300.00137 * 1 2 3 25 25 H 1.08998 * 109.47155 * 59.99704 * 1 2 3 26 26 H 1.08994 * 109.46965 * 180.02562 * 1 2 3 27 27 H 1.08997 * 110.67245 * 37.51880 * 5 3 2 28 28 H 1.09002 * 110.67051 * 274.38242 * 5 3 2 29 29 H 1.08997 * 109.47290 * 53.84954 * 7 6 5 30 30 H 1.08995 * 109.47600 * 173.85123 * 7 6 5 31 31 H 1.08994 * 109.47420 * 305.08181 * 8 7 6 32 32 H 1.09001 * 109.47026 * 65.07776 * 8 7 6 33 33 H 1.09003 * 109.47562 * 300.00558 * 9 8 7 34 34 H 1.09001 * 109.47112 * 60.00082 * 9 8 7 35 35 H 1.09004 * 109.46652 * 300.00366 * 10 9 8 36 36 H 1.09001 * 109.47026 * 60.00029 * 10 9 8 37 37 H 0.96996 * 119.99634 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.47269 * 64.14201 * 20 19 6 39 39 H 1.09000 * 109.46916 * 184.14277 * 20 19 6 40 40 H 1.08996 * 109.47060 * 304.13935 * 20 19 6 41 41 H 1.09000 * 109.47276 * 179.97438 * 21 19 6 42 42 H 1.08994 * 109.47461 * 299.99973 * 21 19 6 43 43 H 1.00896 * 110.99896 * 56.04698 * 22 21 19 44 44 H 1.00903 * 110.99689 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.31135 * 239.85524 * 23 19 6 46 46 H 1.09006 * 110.31189 * 117.69332 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3737 2.0095 -0.5359 5 6 2.2669 1.7913 1.4486 6 7 3.3528 2.7914 1.2844 7 6 4.0598 3.0140 2.5526 8 6 3.1111 3.6717 3.5567 9 6 3.8801 4.0187 4.8331 10 6 2.9316 4.6771 5.8370 11 6 3.6892 5.0195 7.0939 12 1 4.7421 4.7908 7.1690 13 6 3.0385 5.6256 8.1476 14 7 1.7566 5.9045 8.0559 15 14 3.9775 6.0493 9.7058 16 1 5.0815 6.9870 9.3790 17 1 3.0568 6.6884 10.6802 18 1 4.5403 4.8089 10.2974 19 6 4.2631 2.2335 0.2608 20 6 5.4001 1.4653 0.9377 21 6 4.8324 3.3622 -0.6012 22 7 5.5769 4.3002 0.2496 23 6 3.4298 1.2765 -0.6115 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 2.5967 0.9654 2.0787 28 1 1.3729 2.2586 1.8618 29 1 4.4035 2.0588 2.9494 30 1 4.9165 3.6657 2.3815 31 1 2.6972 4.5820 3.1231 32 1 2.3012 2.9827 3.7965 33 1 4.2941 3.1084 5.2668 34 1 4.6900 4.7078 4.5933 35 1 2.5181 5.5875 5.4029 36 1 2.1214 3.9884 6.0768 37 1 1.2987 6.3305 8.7973 38 1 4.9915 0.6076 1.4718 39 1 6.1057 1.1203 0.1819 40 1 5.9131 2.1209 1.6413 41 1 5.5021 2.9433 -1.3522 42 1 4.0162 3.8891 -1.0952 43 1 6.2990 3.8230 0.7682 44 1 5.9628 5.0557 -0.2967 45 1 3.8410 0.2680 -0.5657 46 1 3.4049 1.6291 -1.6426 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708949808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:53 Heat of formation + Delta-G solvation = -76.082435 kcal Electronic energy + Delta-G solvation = -21713.966097 eV Core-core repulsion = 18637.058940 eV Total energy + Delta-G solvation = -3076.907157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20555 -38.46227 -36.70501 -35.17918 -34.38393 -32.43029 -31.15883 -29.47535 -27.66056 -27.07297 -26.19879 -24.98967 -23.08491 -22.26834 -21.29318 -19.79386 -18.41355 -17.81569 -17.42602 -16.64672 -16.51599 -16.39044 -15.75459 -15.71974 -15.35400 -15.06173 -14.88045 -14.42078 -14.27437 -13.94148 -13.75663 -13.53345 -13.28592 -12.88061 -12.85902 -12.76461 -12.64372 -12.54756 -12.29783 -12.11729 -12.01365 -11.95327 -11.68269 -11.44582 -11.30211 -11.26935 -10.95885 -10.56405 -10.53812 -9.41934 -9.20334 -8.18479 -6.30312 1.39751 1.43779 1.51634 2.41902 2.58314 3.13928 3.21286 3.49879 3.61671 3.88068 3.94836 4.08258 4.18643 4.25262 4.31427 4.32993 4.48105 4.50944 4.55210 4.60572 4.68046 4.71058 4.72892 4.78405 4.85936 4.89695 4.92190 4.93339 4.96919 5.07308 5.11425 5.25276 5.30620 5.38196 5.40575 5.56805 5.78882 5.87491 5.97910 6.19222 6.26015 6.27441 6.44108 6.70910 6.86757 7.38858 8.93439 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.003691 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.708528 B = 7583.284283 C = 8489.461114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.088 3.912 4 H 0.082 0.918 5 C 0.010 3.990 6 N -0.495 5.495 7 C 0.065 3.935 8 C -0.100 4.100 9 C -0.093 4.093 10 C 0.025 3.975 11 C -0.545 4.545 12 H 0.061 0.939 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.091 3.909 20 C -0.172 4.172 21 C 0.091 3.909 22 N -0.854 5.854 23 C -0.112 4.112 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.052 0.948 35 H -0.012 1.012 36 H -0.015 1.015 37 H 0.263 0.737 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.339 0.661 44 H 0.347 0.653 45 H 0.081 0.919 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 -10.642 -21.993 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.029 3.971 4 H 0.100 0.900 5 C -0.119 4.119 6 N -0.219 5.219 7 C -0.063 4.063 8 C -0.139 4.139 9 C -0.131 4.131 10 C -0.012 4.012 11 C -0.583 4.583 12 H 0.079 0.921 13 C -0.200 4.200 14 N -0.576 5.576 15 Si 0.791 3.209 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.191 1.191 19 C 0.001 3.999 20 C -0.231 4.231 21 C -0.041 4.041 22 N -0.386 5.386 23 C -0.151 4.151 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.006 0.994 36 H 0.004 0.996 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.100 0.900 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.903 -10.108 -21.718 24.271 hybrid contribution 0.776 -0.457 0.975 1.327 sum 4.679 -10.565 -20.742 23.744 Atomic orbital electron populations 1.22958 0.79676 1.03812 1.00688 1.87864 1.21318 1.27666 1.94935 1.23004 0.95441 0.84287 0.94341 0.89967 1.23689 0.96340 0.94045 0.97806 1.64719 1.09665 1.39865 1.07698 1.22260 0.97107 0.98724 0.88194 1.21443 0.97940 0.99798 0.94671 1.21365 0.98113 0.99170 0.94454 1.19002 0.94474 0.94025 0.93728 1.21715 0.96422 1.39284 1.00894 0.92113 1.26035 0.95847 0.95536 1.02588 1.70110 1.10688 1.43400 1.33361 0.85473 0.78369 0.78830 0.78210 1.18999 1.20747 1.19109 1.21895 0.92355 0.93182 0.92482 1.22466 0.98921 1.00075 1.01616 1.21721 0.97185 0.92240 0.92913 1.58609 1.33436 1.14646 1.31948 1.22521 0.92717 0.99946 0.99870 0.94238 0.92590 0.88291 0.94369 0.91203 0.95305 0.88612 0.93061 0.94170 0.93465 0.92883 0.99399 0.99613 0.92790 0.93450 0.90448 0.91535 0.93598 0.91150 0.84677 0.83885 0.89991 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.88 113.37 1.23 1.64 16 2 O -0.40 -8.84 10.45 -148.98 -1.56 -10.40 16 3 C 0.09 1.86 3.51 31.80 0.11 1.98 16 4 H 0.08 1.62 7.88 -2.39 -0.02 1.60 16 5 C 0.01 0.26 5.39 86.65 0.47 0.73 16 6 N -0.50 -13.04 4.83 -834.14 -4.03 -17.07 16 7 C 0.07 1.95 3.42 86.31 0.29 2.24 16 8 C -0.10 -3.78 5.11 30.59 0.16 -3.63 16 9 C -0.09 -4.09 5.15 30.59 0.16 -3.93 16 10 C 0.02 1.40 4.97 29.85 0.15 1.54 16 11 C -0.55 -32.47 9.11 25.60 0.23 -32.24 16 12 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 13 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 14 N -0.94 -59.03 13.29 21.45 0.28 -58.74 16 15 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.09 1.81 0.73 3.67 0.00 1.81 16 20 C -0.17 -3.23 6.64 71.98 0.48 -2.76 16 21 C 0.09 1.56 5.76 86.30 0.50 2.06 16 22 N -0.85 -15.86 7.99 -186.71 -1.49 -17.35 16 23 C -0.11 -2.01 5.98 31.47 0.19 -1.82 16 24 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.06 0.76 8.11 -2.39 -0.02 0.74 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.10 7.91 -2.39 -0.02 1.08 16 28 H 0.07 1.99 7.83 -2.39 -0.02 1.97 16 29 H 0.03 0.86 6.54 -2.39 -0.02 0.84 16 30 H 0.10 2.80 5.60 -2.39 -0.01 2.79 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.55 7.36 -2.39 -0.02 1.53 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 35 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.05 1.00 7.92 -2.39 -0.02 0.98 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.32 4.99 -2.39 -0.01 1.30 16 41 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.34 5.83 6.81 -89.70 -0.61 5.22 16 44 H 0.35 5.24 9.08 -89.69 -0.81 4.42 16 45 H 0.08 1.48 7.62 -2.39 -0.02 1.46 16 46 H 0.10 1.35 7.69 -2.38 -0.02 1.33 16 Total: -1.00 -68.95 352.32 -0.82 -69.77 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.48 Total: 18.39 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 4.43 Total: -32.07 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -5.24 Total: -93.16 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -1.56 Total: -10.40 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.95 -0.82 -69.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708949808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.317 kcal (2) G-P(sol) polarization free energy of solvation -68.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds