Wall clock time and date at job start Mon Mar 30 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99820 * 2 1 4 4 H 1.08999 * 110.87686 * 26.14884 * 3 2 1 5 5 C 1.54910 * 111.01859 * 262.27979 * 3 2 1 6 6 N 1.48177 * 104.86682 * 204.88308 * 5 3 2 7 7 C 1.46900 * 111.14026 * 146.20896 * 6 5 3 8 8 C 1.52992 * 109.47077 * 55.49583 * 7 6 5 9 9 C 1.52994 * 109.47179 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47362 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47428 * 180.02562 * 10 9 8 12 12 H 1.08006 * 119.99742 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00380 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99751 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00106 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47301 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46844 * 120.00007 * 15 13 11 18 18 H 1.48504 * 109.47523 * 239.99574 * 15 13 11 19 19 C 1.47445 * 108.38836 * 23.96802 * 6 5 3 20 20 C 1.53000 * 109.89026 * 239.65948 * 19 6 5 21 21 C 1.53002 * 109.88516 * 118.63167 * 19 6 5 22 22 N 1.46904 * 109.46732 * 180.43757 * 21 19 6 23 23 C 1.54323 * 107.37174 * 359.14762 * 19 6 5 24 24 H 1.08993 * 109.47198 * 300.00573 * 1 2 3 25 25 H 1.08998 * 109.46663 * 60.00754 * 1 2 3 26 26 H 1.09000 * 109.46869 * 180.02562 * 1 2 3 27 27 H 1.08999 * 110.37474 * 323.65060 * 5 3 2 28 28 H 1.08997 * 110.37268 * 85.88417 * 5 3 2 29 29 H 1.09002 * 109.46956 * 175.49856 * 7 6 5 30 30 H 1.08998 * 109.46479 * 295.49745 * 7 6 5 31 31 H 1.09000 * 109.47459 * 300.00506 * 8 7 6 32 32 H 1.09004 * 109.47074 * 60.00018 * 8 7 6 33 33 H 1.08995 * 109.47545 * 300.00151 * 9 8 7 34 34 H 1.09000 * 109.47210 * 60.00559 * 9 8 7 35 35 H 1.09002 * 109.47161 * 299.99949 * 10 9 8 36 36 H 1.08995 * 109.47387 * 60.00027 * 10 9 8 37 37 H 0.96998 * 119.99697 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47269 * 299.66708 * 20 19 6 39 39 H 1.08999 * 109.46799 * 179.67140 * 20 19 6 40 40 H 1.08993 * 109.47096 * 59.67309 * 20 19 6 41 41 H 1.08999 * 109.47478 * 300.43309 * 21 19 6 42 42 H 1.08998 * 109.47209 * 60.44068 * 21 19 6 43 43 H 1.00905 * 110.99644 * 173.81982 * 22 21 19 44 44 H 1.00903 * 111.00428 * 297.77309 * 22 21 19 45 45 H 1.09000 * 110.70174 * 96.01262 * 23 19 6 46 46 H 1.08991 * 110.70582 * 219.07780 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3331 2.0322 0.4488 5 6 2.4137 1.7341 -1.4329 6 7 3.4943 2.7298 -1.2419 7 6 4.4852 2.6503 -2.3234 8 6 3.7819 2.8121 -3.6724 9 6 4.8140 2.7299 -4.7988 10 6 4.1107 2.8923 -6.1478 11 6 5.1272 2.8108 -7.2574 12 1 6.1707 2.6588 -7.0236 13 6 4.7254 2.9313 -8.5708 14 7 3.4549 3.1168 -8.8553 15 14 5.9856 2.8309 -9.9460 16 1 7.3361 2.6202 -9.3655 17 1 5.6495 1.6965 -10.8434 18 1 5.9730 4.0968 -10.7224 19 6 4.1230 2.4880 0.0697 20 6 3.9906 3.7338 0.9480 21 6 5.6006 2.1383 -0.1180 22 7 6.2152 1.8891 1.1928 23 6 3.3822 1.3030 0.7244 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 2.7846 0.8771 -1.9951 28 1 1.5653 2.1858 -1.9469 29 1 5.2219 3.4442 -2.2002 30 1 4.9848 1.6822 -2.2879 31 1 3.0451 2.0183 -3.7955 32 1 3.2822 3.7802 -3.7078 33 1 5.5504 3.5240 -4.6755 34 1 5.3140 1.7620 -4.7636 35 1 3.3740 2.0984 -6.2715 36 1 3.6110 3.8603 -6.1829 37 1 3.1722 3.2012 -9.7794 38 1 4.4898 4.5737 0.4648 39 1 4.4522 3.5456 1.9173 40 1 2.9357 3.9695 1.0876 41 1 5.6869 1.2443 -0.7355 42 1 6.1111 2.9681 -0.6068 43 1 7.1631 1.5587 1.0908 44 1 6.1804 2.7151 1.7714 45 1 3.9128 0.3686 0.5417 46 1 3.2565 1.4706 1.7939 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708949851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:00 Heat of formation + Delta-G solvation = -54.157482 kcal Electronic energy + Delta-G solvation = -21630.511023 eV Core-core repulsion = 18554.554604 eV Total energy + Delta-G solvation = -3075.956419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.30596 -37.57128 -35.31834 -34.07533 -32.70865 -30.96676 -30.23220 -27.83678 -26.76075 -26.48666 -24.37073 -24.04519 -22.04760 -20.88761 -19.80704 -18.58696 -17.04583 -16.73920 -16.16828 -15.65646 -15.41304 -15.03693 -14.90672 -14.44723 -14.31737 -14.01774 -13.61541 -13.38951 -13.12055 -12.72118 -12.53356 -12.10542 -11.90618 -11.77731 -11.58479 -11.50195 -11.39376 -11.11919 -11.02019 -10.95520 -10.63500 -10.52436 -10.43231 -10.36121 -9.70129 -9.57731 -9.24024 -8.97659 -8.86151 -8.31938 -8.24335 -5.96716 -3.98798 3.32419 3.39660 3.42747 3.44097 4.02892 4.36152 4.48896 4.51358 4.62431 4.76596 4.91838 5.10996 5.13136 5.23347 5.26651 5.34711 5.39089 5.41251 5.48263 5.53414 5.54128 5.66485 5.78772 5.82615 5.85087 5.93964 5.95259 6.01802 6.14291 6.25632 6.30762 6.52073 6.78966 6.83034 6.97114 6.99825 7.10404 7.13005 7.20971 7.26872 7.72648 7.88443 8.04535 8.47426 9.08891 9.65063 11.14715 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.003639 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.741517 B = 7691.819994 C = 8591.561870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.073 3.927 4 H 0.074 0.926 5 C 0.024 3.976 6 N -0.515 5.515 7 C 0.048 3.952 8 C -0.117 4.117 9 C -0.108 4.108 10 C 0.021 3.979 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.100 3.900 20 C -0.129 4.129 21 C 0.050 3.950 22 N -0.847 5.847 23 C -0.110 4.110 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.341 0.659 44 H 0.339 0.661 45 H 0.080 0.920 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 -2.188 22.754 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.014 3.986 4 H 0.092 0.908 5 C -0.104 4.104 6 N -0.240 5.240 7 C -0.079 4.079 8 C -0.155 4.155 9 C -0.146 4.146 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.010 3.990 20 C -0.187 4.187 21 C -0.081 4.081 22 N -0.378 5.378 23 C -0.149 4.149 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.057 0.943 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.098 0.902 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.206 -2.376 22.678 22.909 hybrid contribution 1.414 0.141 -1.278 1.911 sum -0.792 -2.234 21.400 21.531 Atomic orbital electron populations 1.22801 0.81051 1.02704 1.00053 1.87908 1.19703 1.27233 1.94864 1.23354 0.95134 0.84494 0.95625 0.90754 1.23500 0.95552 0.94570 0.96778 1.63812 1.11134 1.47864 1.01217 1.22480 0.94288 1.00061 0.91098 1.21720 0.99046 1.02066 0.92646 1.21585 0.97239 0.99959 0.95850 1.19090 0.95634 0.97055 0.89817 1.21327 0.94146 1.49003 0.91264 0.92747 1.25032 0.95178 0.95425 0.98897 1.69982 1.14714 1.50154 1.18706 0.86562 0.81759 0.77593 0.82238 1.19779 1.21030 1.21028 1.21658 0.92437 0.94658 0.90249 1.21772 1.02253 0.96653 0.98022 1.22383 0.94474 1.00513 0.90775 1.58702 1.24741 1.39111 1.15234 1.22713 0.93641 0.98775 0.99742 0.94140 0.93762 0.89695 0.92205 0.90007 0.90789 0.94499 0.92551 0.91756 0.93522 0.93725 0.96754 0.96632 0.93121 0.92507 0.92324 0.92237 0.90589 0.94332 0.84637 0.84778 0.90157 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.37 16 2 O -0.38 -4.66 10.51 -35.23 -0.37 -5.04 16 3 C 0.07 0.84 3.54 -24.59 -0.09 0.75 16 4 H 0.07 0.78 7.83 -51.93 -0.41 0.38 16 5 C 0.02 0.32 5.10 -2.11 -0.01 0.31 16 6 N -0.52 -6.78 4.90 -215.47 -1.06 -7.84 16 7 C 0.05 0.70 3.76 -3.83 -0.01 0.68 16 8 C -0.12 -2.05 5.02 -26.74 -0.13 -2.19 16 9 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 12 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 15 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C 0.10 1.10 0.96 -130.61 -0.13 0.98 16 20 C -0.13 -1.24 8.37 37.16 0.31 -0.93 16 21 C 0.05 0.53 4.35 -3.82 -0.02 0.51 16 22 N -0.85 -7.23 9.15 -10.37 -0.09 -7.32 16 23 C -0.11 -1.23 5.42 -24.91 -0.13 -1.37 16 24 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.88 7.41 -51.93 -0.38 0.49 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.05 6.95 -51.93 -0.36 0.69 16 30 H 0.04 0.54 6.26 -51.93 -0.33 0.21 16 31 H 0.06 1.01 6.83 -51.93 -0.35 0.65 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.47 6.71 -51.93 -0.35 0.12 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.90 6.62 -51.93 -0.34 0.56 16 42 H 0.04 0.42 6.71 -51.93 -0.35 0.07 16 43 H 0.34 2.48 9.08 -39.29 -0.36 2.12 16 44 H 0.34 2.47 7.31 -39.29 -0.29 2.18 16 45 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 46 H 0.08 0.79 7.83 -51.93 -0.41 0.38 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -31.24 353.75 -8.80 -40.04 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.52 Total: 0.29 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 0.20 Total: -15.71 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.42 Total: -41.88 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.37 Total: -5.04 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.24 -8.80 -40.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708949851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.120 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds