Wall clock time and date at job start Mon Mar 30 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99820 * 2 1 4 4 H 1.08999 * 110.87686 * 26.14884 * 3 2 1 5 5 C 1.54910 * 111.01859 * 262.27979 * 3 2 1 6 6 N 1.48177 * 104.86682 * 204.88308 * 5 3 2 7 7 C 1.46900 * 111.14026 * 146.20896 * 6 5 3 8 8 C 1.52992 * 109.47077 * 55.49583 * 7 6 5 9 9 C 1.52994 * 109.47179 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47362 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47428 * 180.02562 * 10 9 8 12 12 H 1.08006 * 119.99742 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00380 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99751 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00106 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47301 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46844 * 120.00007 * 15 13 11 18 18 H 1.48504 * 109.47523 * 239.99574 * 15 13 11 19 19 C 1.47445 * 108.38836 * 23.96802 * 6 5 3 20 20 C 1.53000 * 109.89026 * 239.65948 * 19 6 5 21 21 C 1.53002 * 109.88516 * 118.63167 * 19 6 5 22 22 N 1.46904 * 109.46732 * 180.43757 * 21 19 6 23 23 C 1.54323 * 107.37174 * 359.14762 * 19 6 5 24 24 H 1.08993 * 109.47198 * 300.00573 * 1 2 3 25 25 H 1.08998 * 109.46663 * 60.00754 * 1 2 3 26 26 H 1.09000 * 109.46869 * 180.02562 * 1 2 3 27 27 H 1.08999 * 110.37474 * 323.65060 * 5 3 2 28 28 H 1.08997 * 110.37268 * 85.88417 * 5 3 2 29 29 H 1.09002 * 109.46956 * 175.49856 * 7 6 5 30 30 H 1.08998 * 109.46479 * 295.49745 * 7 6 5 31 31 H 1.09000 * 109.47459 * 300.00506 * 8 7 6 32 32 H 1.09004 * 109.47074 * 60.00018 * 8 7 6 33 33 H 1.08995 * 109.47545 * 300.00151 * 9 8 7 34 34 H 1.09000 * 109.47210 * 60.00559 * 9 8 7 35 35 H 1.09002 * 109.47161 * 299.99949 * 10 9 8 36 36 H 1.08995 * 109.47387 * 60.00027 * 10 9 8 37 37 H 0.96998 * 119.99697 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47269 * 299.66708 * 20 19 6 39 39 H 1.08999 * 109.46799 * 179.67140 * 20 19 6 40 40 H 1.08993 * 109.47096 * 59.67309 * 20 19 6 41 41 H 1.08999 * 109.47478 * 300.43309 * 21 19 6 42 42 H 1.08998 * 109.47209 * 60.44068 * 21 19 6 43 43 H 1.00905 * 110.99644 * 173.81982 * 22 21 19 44 44 H 1.00903 * 111.00428 * 297.77309 * 22 21 19 45 45 H 1.09000 * 110.70174 * 96.01262 * 23 19 6 46 46 H 1.08991 * 110.70582 * 219.07780 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3331 2.0322 0.4488 5 6 2.4137 1.7341 -1.4329 6 7 3.4943 2.7298 -1.2419 7 6 4.4852 2.6503 -2.3234 8 6 3.7819 2.8121 -3.6724 9 6 4.8140 2.7299 -4.7988 10 6 4.1107 2.8923 -6.1478 11 6 5.1272 2.8108 -7.2574 12 1 6.1707 2.6588 -7.0236 13 6 4.7254 2.9313 -8.5708 14 7 3.4549 3.1168 -8.8553 15 14 5.9856 2.8309 -9.9460 16 1 7.3361 2.6202 -9.3655 17 1 5.6495 1.6965 -10.8434 18 1 5.9730 4.0968 -10.7224 19 6 4.1230 2.4880 0.0697 20 6 3.9906 3.7338 0.9480 21 6 5.6006 2.1383 -0.1180 22 7 6.2152 1.8891 1.1928 23 6 3.3822 1.3030 0.7244 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 2.7846 0.8771 -1.9951 28 1 1.5653 2.1858 -1.9469 29 1 5.2219 3.4442 -2.2002 30 1 4.9848 1.6822 -2.2879 31 1 3.0451 2.0183 -3.7955 32 1 3.2822 3.7802 -3.7078 33 1 5.5504 3.5240 -4.6755 34 1 5.3140 1.7620 -4.7636 35 1 3.3740 2.0984 -6.2715 36 1 3.6110 3.8603 -6.1829 37 1 3.1722 3.2012 -9.7794 38 1 4.4898 4.5737 0.4648 39 1 4.4522 3.5456 1.9173 40 1 2.9357 3.9695 1.0876 41 1 5.6869 1.2443 -0.7355 42 1 6.1111 2.9681 -0.6068 43 1 7.1631 1.5587 1.0908 44 1 6.1804 2.7151 1.7714 45 1 3.9128 0.3686 0.5417 46 1 3.2565 1.4706 1.7939 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708949851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:59 Heat of formation + Delta-G solvation = -76.797610 kcal Electronic energy + Delta-G solvation = -21631.492772 eV Core-core repulsion = 18554.554604 eV Total energy + Delta-G solvation = -3076.938169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27225 -38.47393 -36.81111 -35.32929 -34.40450 -32.46202 -31.06902 -29.46229 -27.73158 -27.26942 -26.05677 -25.02445 -23.37050 -22.36895 -21.29842 -19.53398 -18.44657 -17.94484 -17.58473 -16.72947 -16.54324 -16.37320 -15.91889 -15.78986 -15.49654 -15.01682 -14.63828 -14.53472 -14.36231 -13.98733 -13.93792 -13.65911 -13.14345 -13.07059 -12.78484 -12.72475 -12.53860 -12.39261 -12.30571 -12.18769 -12.11051 -12.00435 -11.80475 -11.52062 -11.40518 -11.31102 -10.98565 -10.57545 -10.55070 -9.58298 -9.30271 -8.21173 -6.32814 1.38663 1.39160 1.52698 2.39739 2.52517 3.11475 3.11665 3.47103 3.58792 3.82252 3.91006 4.03554 4.07425 4.10257 4.28815 4.32248 4.45934 4.48270 4.53998 4.55927 4.59062 4.64386 4.76670 4.83089 4.84576 4.86188 4.89186 4.94841 5.03946 5.09150 5.10805 5.20829 5.26056 5.32134 5.47113 5.52814 5.74878 5.84715 5.92796 6.02849 6.23564 6.25815 6.26759 6.60560 6.84655 7.36688 8.91052 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.003639 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.741517 B = 7691.819994 C = 8591.561870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.078 3.922 4 H 0.089 0.911 5 C 0.022 3.978 6 N -0.519 5.519 7 C 0.060 3.940 8 C -0.106 4.106 9 C -0.095 4.095 10 C 0.024 3.976 11 C -0.544 4.544 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.098 3.902 20 C -0.124 4.124 21 C 0.055 3.945 22 N -0.845 5.845 23 C -0.103 4.103 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.047 0.953 35 H -0.013 1.013 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.350 0.650 44 H 0.349 0.651 45 H 0.063 0.937 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 -2.038 24.074 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C 0.019 3.981 4 H 0.107 0.893 5 C -0.106 4.106 6 N -0.244 5.244 7 C -0.067 4.067 8 C -0.144 4.144 9 C -0.133 4.133 10 C -0.013 4.013 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.202 1.202 19 C 0.009 3.991 20 C -0.182 4.182 21 C -0.076 4.076 22 N -0.378 5.378 23 C -0.142 4.142 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.115 0.885 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.005 0.995 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.082 0.918 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.078 -2.226 24.026 24.153 hybrid contribution 1.000 0.077 -1.673 1.951 sum -0.078 -2.149 22.352 22.456 Atomic orbital electron populations 1.22991 0.79529 1.03852 1.00824 1.87882 1.21495 1.27620 1.94889 1.23337 0.95698 0.84699 0.94330 0.89312 1.23481 0.95381 0.93806 0.97927 1.63809 1.10936 1.47896 1.01803 1.22269 0.94242 1.00405 0.89829 1.21535 0.98047 1.01304 0.93469 1.21384 0.97624 1.00294 0.94017 1.19012 0.95026 0.94542 0.92766 1.21763 0.94804 1.49260 0.92391 0.92179 1.26022 0.97404 0.94694 1.01869 1.70116 1.16950 1.50811 1.19616 0.85376 0.79180 0.77878 0.78474 1.18512 1.20318 1.20224 1.21777 0.92628 0.95539 0.89173 1.21748 1.02474 0.95508 0.98494 1.22224 0.94256 0.99578 0.91587 1.58651 1.25373 1.39618 1.14143 1.22660 0.93102 0.97944 1.00479 0.92420 0.93894 0.88482 0.94221 0.90637 0.89951 0.94427 0.93393 0.92528 0.92804 0.93399 0.99483 0.99173 0.92767 0.92858 0.90330 0.92241 0.92224 0.94560 0.83676 0.83686 0.91779 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.85 113.37 1.23 1.64 16 2 O -0.40 -9.56 10.51 -148.98 -1.57 -11.12 16 3 C 0.08 1.73 3.54 31.98 0.11 1.84 16 4 H 0.09 1.71 7.83 -2.39 -0.02 1.69 16 5 C 0.02 0.59 5.10 86.71 0.44 1.04 16 6 N -0.52 -13.33 4.90 -835.61 -4.10 -17.43 16 7 C 0.06 1.72 3.76 86.30 0.32 2.05 16 8 C -0.11 -3.77 5.02 30.59 0.15 -3.62 16 9 C -0.10 -4.04 5.15 30.59 0.16 -3.89 16 10 C 0.02 1.30 4.97 29.85 0.15 1.45 16 11 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 12 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 13 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 14 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 15 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 C 0.10 2.02 0.96 3.87 0.00 2.03 16 20 C -0.12 -2.09 8.37 71.98 0.60 -1.49 16 21 C 0.06 1.09 4.35 86.30 0.38 1.46 16 22 N -0.85 -12.68 9.15 -186.71 -1.71 -14.39 16 23 C -0.10 -2.16 5.42 31.78 0.17 -1.98 16 24 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 25 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.20 7.41 -2.39 -0.02 1.18 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 2.24 6.95 -2.39 -0.02 2.22 16 30 H 0.04 1.08 6.26 -2.39 -0.01 1.07 16 31 H 0.05 1.78 6.83 -2.39 -0.02 1.76 16 32 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.01 6.71 -2.39 -0.02 0.99 16 40 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.38 6.62 -2.39 -0.02 1.36 16 42 H 0.04 0.73 6.71 -2.39 -0.02 0.71 16 43 H 0.35 4.40 9.08 -89.69 -0.81 3.58 16 44 H 0.35 4.14 7.31 -89.69 -0.66 3.48 16 45 H 0.06 1.56 7.85 -2.39 -0.02 1.54 16 46 H 0.09 1.65 7.83 -2.39 -0.02 1.63 16 Total: -1.00 -67.41 353.75 -1.17 -68.58 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.53 Total: 16.18 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 4.42 Total: -30.90 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -5.52 Total: -89.84 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.57 Total: -11.12 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.41 -1.17 -68.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708949851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.214 kcal (2) G-P(sol) polarization free energy of solvation -67.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds