Wall clock time and date at job start Mon Mar 30 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00103 * 2 1 4 4 C 1.52993 * 109.47058 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47479 * 65.00180 * 4 3 2 6 6 C 1.46504 * 119.99822 * 270.00263 * 5 4 3 7 7 C 1.50705 * 109.46739 * 269.99692 * 6 5 4 8 8 H 1.07997 * 120.00117 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99760 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00035 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00221 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47309 * 90.00169 * 11 9 7 13 13 H 1.48502 * 109.47431 * 210.00182 * 11 9 7 14 14 H 1.48500 * 109.47173 * 329.99807 * 11 9 7 15 15 C 1.34776 * 120.00439 * 89.99118 * 5 4 3 16 16 O 1.21280 * 119.99762 * 0.02562 * 15 5 4 17 17 C 1.50699 * 120.00170 * 180.02562 * 15 5 4 18 18 C 1.53001 * 109.47140 * 180.02562 * 17 15 5 19 19 C 1.52996 * 109.47031 * 179.97438 * 18 17 15 20 20 C 1.53515 * 114.16965 * 184.99981 * 19 18 17 21 21 N 1.47481 * 87.93334 * 220.32733 * 20 19 18 22 22 C 1.47488 * 87.83530 * 27.00963 * 21 20 19 23 23 H 1.08994 * 109.47334 * 60.00153 * 1 2 3 24 24 H 1.08996 * 109.47028 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47098 * 300.00107 * 1 2 3 26 26 H 1.08998 * 109.46936 * 59.99703 * 3 2 1 27 27 H 1.09006 * 109.46951 * 300.00390 * 3 2 1 28 28 H 1.08995 * 109.47363 * 304.99681 * 4 3 2 29 29 H 1.09007 * 109.47292 * 184.99773 * 4 3 2 30 30 H 1.09000 * 109.46943 * 29.99206 * 6 5 4 31 31 H 1.08999 * 109.47198 * 149.99707 * 6 5 4 32 32 H 0.97000 * 120.00018 * 179.97438 * 10 9 7 33 33 H 1.08994 * 109.47034 * 60.00028 * 17 15 5 34 34 H 1.09000 * 109.47002 * 300.00414 * 17 15 5 35 35 H 1.08997 * 109.47056 * 60.00061 * 18 17 15 36 36 H 1.09000 * 109.47122 * 299.99865 * 18 17 15 37 37 H 1.09002 * 113.38857 * 318.07816 * 19 18 17 38 38 H 1.09004 * 113.47747 * 105.56637 * 20 19 18 39 39 H 1.08995 * 113.53124 * 335.10698 * 20 19 18 40 40 H 1.00901 * 110.99857 * 138.69928 * 21 20 19 41 41 H 1.08996 * 113.47304 * 87.75121 * 22 21 20 42 42 H 1.08997 * 113.47652 * 218.22256 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 5.5010 -1.2979 -0.9449 8 1 6.2198 -0.5460 -0.6545 9 6 5.8603 -2.6289 -0.9517 10 7 7.0785 -2.9830 -0.6049 11 14 4.6168 -3.9295 -1.4533 12 1 4.7009 -4.1558 -2.9186 13 1 4.9113 -5.1977 -0.7389 14 1 3.2496 -3.4691 -1.1012 15 6 4.2615 1.3336 -2.3219 16 8 4.1545 2.5394 -2.2473 17 6 4.7138 0.6956 -3.6100 18 6 4.9706 1.7830 -4.6552 19 6 5.4305 1.1353 -5.9627 20 6 5.8356 2.1378 -7.0524 21 7 5.1610 1.2651 -8.0313 22 6 4.2897 0.8028 -6.9347 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8463 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8515 0.5682 0.8409 29 1 3.9786 2.1765 0.0889 30 1 3.3852 -1.3629 -0.6734 31 1 3.9120 -1.2115 -2.3669 32 1 7.3312 -3.9195 -0.6093 33 1 3.9396 0.0190 -3.9718 34 1 5.6326 0.1359 -3.4351 35 1 5.7450 2.4592 -4.2931 36 1 4.0520 2.3430 -4.8301 37 1 6.1428 0.3233 -5.8162 38 1 6.9133 2.2054 -7.2013 39 1 5.3633 3.1140 -6.9429 40 1 4.6398 1.8095 -8.7022 41 1 3.4042 1.4224 -6.7931 42 1 4.0572 -0.2609 -6.9838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709445872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:09 Heat of formation + Delta-G solvation = -78.369603 kcal Electronic energy + Delta-G solvation = -21526.558989 eV Core-core repulsion = 18313.719559 eV Total energy + Delta-G solvation = -3212.839430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07445 -40.36577 -38.72951 -36.67188 -34.61710 -34.16337 -31.60079 -29.48331 -28.39422 -27.05054 -26.69188 -24.73040 -24.33603 -22.93052 -20.54833 -19.76712 -19.07637 -18.18223 -17.45617 -17.23896 -16.91335 -16.75039 -16.37620 -16.23074 -15.88247 -15.60482 -15.05975 -14.67165 -14.23195 -14.03257 -13.82353 -13.48255 -13.46494 -13.14141 -13.02222 -12.76384 -12.66359 -12.50484 -12.30815 -12.12060 -12.04013 -11.92776 -11.70196 -11.64650 -11.15974 -10.80035 -10.72757 -10.51146 -9.94363 -9.40619 -8.27935 -6.34228 1.40729 1.43287 1.54166 1.75871 2.30842 2.37079 2.91096 3.07146 3.29243 3.47163 3.68319 3.94110 4.12621 4.18400 4.29058 4.33415 4.38788 4.42283 4.48246 4.53705 4.56266 4.60955 4.72961 4.75938 4.82926 4.83963 4.84746 4.88109 4.92636 5.04518 5.08677 5.12329 5.24269 5.43233 5.49154 5.71941 6.19899 6.27787 6.36072 6.65211 6.72640 7.26360 7.37339 8.88356 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.006553 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.005719 B = 4272.042710 C = 5618.251695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.059 3.941 4 C 0.113 3.887 5 N -0.591 5.591 6 C 0.226 3.774 7 C -0.538 4.538 8 H 0.030 0.970 9 C 0.020 3.980 10 N -0.943 5.943 11 Si 0.937 3.063 12 H -0.259 1.259 13 H -0.286 1.286 14 H -0.242 1.242 15 C 0.511 3.489 16 O -0.594 6.594 17 C -0.131 4.131 18 C -0.077 4.077 19 C -0.119 4.119 20 C 0.009 3.991 21 N -0.642 5.642 22 C 0.007 3.993 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.268 0.732 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.329 0.671 41 H 0.080 0.920 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.398 7.316 -7.508 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.018 4.018 4 C -0.010 4.010 5 N -0.320 5.320 6 C 0.103 3.897 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.179 4.179 10 N -0.583 5.583 11 Si 0.760 3.240 12 H -0.184 1.184 13 H -0.212 1.212 14 H -0.165 1.165 15 C 0.301 3.699 16 O -0.477 6.477 17 C -0.171 4.171 18 C -0.115 4.115 19 C -0.138 4.138 20 C -0.121 4.121 21 N -0.267 5.267 22 C -0.124 4.124 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.142 0.858 41 H 0.098 0.902 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.695 6.950 -7.665 15.615 hybrid contribution -0.583 0.118 0.494 0.773 sum -12.279 7.068 -7.172 15.879 Atomic orbital electron populations 1.22896 0.79820 1.03520 1.00715 1.87956 1.21288 1.28256 1.95520 1.22888 0.93095 0.84786 1.01056 1.21493 0.93190 0.99348 0.86973 1.47935 1.64279 1.08346 1.11481 1.19558 0.95267 0.76810 0.98022 1.21556 0.97167 0.92868 1.46111 0.95198 1.25743 0.96966 1.00761 0.94395 1.70054 1.20620 1.18099 1.49519 0.85857 0.80547 0.78149 0.79442 1.18380 1.21166 1.16548 1.21063 0.75893 0.86531 0.86429 1.90555 1.56507 1.15348 1.85264 1.21631 1.03529 0.99900 0.92040 1.21161 1.01556 0.96175 0.92632 1.22760 0.98915 0.99265 0.92888 1.23623 1.01367 0.95884 0.91252 1.67288 1.21568 1.29089 1.08757 1.23704 0.95517 1.02366 0.90776 0.93735 0.88965 0.92615 0.90123 0.93714 0.90469 0.89233 0.93618 0.93994 0.92343 0.88093 0.89512 0.92275 0.91137 0.89054 0.89916 0.90243 0.85823 0.90228 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -13.02 9.53 -148.98 -1.42 -14.44 16 3 C 0.06 1.76 6.28 71.98 0.45 2.21 16 4 C 0.11 4.09 5.81 86.38 0.50 4.60 16 5 N -0.59 -24.32 2.42 -826.15 -2.00 -26.32 16 6 C 0.23 10.06 3.85 85.63 0.33 10.39 16 7 C -0.54 -29.28 9.84 25.60 0.25 -29.02 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.02 1.11 5.47 84.65 0.46 1.57 16 10 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16 11 Si 0.94 41.10 27.47 68.60 1.88 42.98 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 13 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 15 C 0.51 20.43 7.67 87.66 0.67 21.11 16 16 O -0.59 -25.26 15.56 -3.03 -0.05 -25.31 16 17 C -0.13 -4.50 4.24 29.85 0.13 -4.38 16 18 C -0.08 -2.20 4.41 30.59 0.14 -2.06 16 19 C -0.12 -2.97 3.99 -10.45 -0.04 -3.01 16 20 C 0.01 0.19 8.20 83.58 0.69 0.87 16 21 N -0.64 -13.68 8.71 -541.87 -4.72 -18.40 16 22 C 0.01 0.14 8.19 83.58 0.68 0.83 16 23 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.08 2.91 8.07 -2.39 -0.02 2.90 16 29 H 0.09 3.18 7.42 -2.38 -0.02 3.16 16 30 H 0.05 2.07 6.17 -2.39 -0.01 2.06 16 31 H 0.04 1.76 5.87 -2.39 -0.01 1.74 16 32 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.10 3.12 7.40 -2.39 -0.02 3.10 16 34 H 0.09 3.36 8.00 -2.39 -0.02 3.34 16 35 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 36 H 0.07 1.93 7.77 -2.39 -0.02 1.91 16 37 H 0.09 2.54 8.12 -2.39 -0.02 2.52 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 40 H 0.33 5.52 8.91 -89.69 -0.80 4.72 16 41 H 0.08 1.48 7.87 -2.39 -0.02 1.46 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -67.07 342.54 -0.36 -67.43 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.14 Total: 25.58 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.51 Total: 4.93 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -6.42 Total: -101.18 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.47 Total: -39.74 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.88 Total: 42.98 kcal Total: -67.07 -0.36 -67.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709445872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.939 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds