Wall clock time and date at job start Mon Mar 30 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99879 * 2 1 4 4 H 1.09004 * 112.90608 * 18.74754 * 3 2 1 5 5 C 1.53777 * 113.61630 * 247.49718 * 3 2 1 6 6 C 1.53778 * 87.08106 * 220.01642 * 5 3 2 7 7 C 1.53780 * 87.08240 * 25.43378 * 6 5 3 8 8 H 1.08994 * 113.61806 * 89.19601 * 7 6 5 9 9 N 1.46501 * 113.61239 * 220.01939 * 7 6 5 10 10 C 1.46498 * 119.99979 * 40.49300 * 9 7 6 11 11 C 1.34772 * 119.99949 * 220.49055 * 9 7 6 12 12 O 1.21281 * 120.00219 * 0.02562 * 11 9 7 13 13 C 1.50703 * 120.00082 * 180.02562 * 11 9 7 14 14 H 1.09007 * 109.47034 * 320.00063 * 13 11 9 15 15 N 1.46903 * 109.47118 * 200.00410 * 13 11 9 16 16 C 1.52994 * 109.47288 * 80.00101 * 13 11 9 17 17 C 1.53001 * 109.47367 * 185.00208 * 16 13 11 18 18 C 1.50697 * 109.46995 * 180.02562 * 17 16 13 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 H 1.09000 * 109.47424 * 60.00586 * 1 2 3 27 27 H 1.09010 * 109.46798 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47174 * 299.99772 * 1 2 3 29 29 H 1.08999 * 113.61375 * 105.46358 * 5 3 2 30 30 H 1.09001 * 113.68778 * 334.57532 * 5 3 2 31 31 H 1.09001 * 113.61440 * 270.88162 * 6 5 3 32 32 H 1.09005 * 113.61243 * 139.98094 * 6 5 3 33 33 H 1.09000 * 109.47168 * 270.00036 * 10 9 7 34 34 H 1.08999 * 109.47092 * 30.00060 * 10 9 7 35 35 H 1.09006 * 109.47485 * 149.99753 * 10 9 7 36 36 H 1.00895 * 111.00058 * 176.04762 * 15 13 11 37 37 H 1.00906 * 110.99529 * 299.99924 * 15 13 11 38 38 H 1.08998 * 109.47353 * 64.99986 * 16 13 11 39 39 H 1.09006 * 109.47395 * 305.00242 * 16 13 11 40 40 H 1.08998 * 109.47065 * 59.99602 * 17 16 13 41 41 H 1.09001 * 109.46892 * 299.99866 * 17 16 13 42 42 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3141 2.0798 0.3227 5 6 2.7534 1.6490 -1.3017 6 6 3.8226 2.3183 -0.4221 7 6 3.3755 1.3720 0.7046 8 1 3.9098 0.4221 0.7147 9 7 3.3255 2.0107 2.0221 10 6 2.8075 3.3745 2.1558 11 6 3.7560 1.3436 3.1111 12 8 4.1853 0.2148 3.0004 13 6 3.7041 2.0004 4.4665 14 1 3.9937 3.0473 4.3743 15 7 4.6294 1.3149 5.3786 16 6 2.2813 1.9119 5.0219 17 6 2.1989 2.6860 6.3391 18 6 0.7976 2.5982 6.8865 19 1 0.0403 2.0494 6.3465 20 6 0.4810 3.2230 8.0742 21 7 -0.7432 3.1510 8.5492 22 14 1.7912 4.1716 9.0086 23 1 1.7975 5.5853 8.5540 24 1 1.4964 4.1207 10.4631 25 1 3.1211 3.5630 8.7515 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2139 2.3477 -1.9411 30 1 3.1170 0.7750 -1.8420 31 1 3.6220 3.3695 -0.2149 32 1 4.8425 2.1401 -0.7630 33 1 3.6252 4.0864 2.0437 34 1 2.0593 3.5562 1.3843 35 1 2.3524 3.4957 3.1389 36 1 4.6611 1.7761 6.2754 37 1 4.3819 0.3420 5.4808 38 1 2.0241 0.8674 5.1977 39 1 1.5833 2.3420 4.3035 40 1 2.4560 3.7305 6.1634 41 1 2.8968 2.2559 7.0575 42 1 -0.9658 3.5902 9.3849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724138828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:17 Heat of formation + Delta-G solvation = -61.232647 kcal Electronic energy + Delta-G solvation = -21638.355745 eV Core-core repulsion = 18426.259429 eV Total energy + Delta-G solvation = -3212.096316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55169 -38.87777 -36.45634 -35.61846 -34.16094 -32.80376 -30.33516 -27.51679 -27.21291 -26.91058 -25.16397 -24.60344 -23.11399 -20.44957 -19.75609 -19.05350 -17.70908 -16.95308 -16.64942 -16.55423 -15.49985 -15.20130 -14.82929 -14.49600 -14.41882 -14.24102 -13.72944 -13.28521 -13.17991 -12.79771 -12.71602 -12.57512 -12.43702 -12.25817 -11.91908 -11.79783 -11.52763 -11.33945 -11.21537 -10.98806 -10.63572 -10.35179 -10.08273 -9.89769 -9.80096 -9.33623 -9.29512 -8.64086 -8.56716 -8.29985 -6.13635 -4.13268 2.83750 2.97574 3.23201 3.32095 3.33369 3.74349 4.27354 4.35911 4.37709 4.64011 4.67102 4.76012 4.99713 5.06285 5.14286 5.19454 5.26740 5.29922 5.39952 5.45374 5.48350 5.58232 5.60126 5.61116 5.64028 5.69982 5.76398 6.01399 6.13687 6.31488 6.54721 6.63603 7.07771 7.08831 7.19218 7.30480 7.53941 7.65102 7.79062 8.38825 8.42847 8.90289 9.47642 10.99577 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.004549 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.930358 B = 6153.914539 C = 6661.821441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.049 3.951 4 H 0.091 0.909 5 C -0.152 4.152 6 C -0.148 4.148 7 C 0.127 3.873 8 H 0.126 0.874 9 N -0.610 5.610 10 C 0.066 3.934 11 C 0.528 3.472 12 O -0.532 6.532 13 C 0.072 3.928 14 H 0.097 0.903 15 N -0.831 5.831 16 C -0.131 4.131 17 C -0.010 4.010 18 C -0.524 4.524 19 H 0.071 0.929 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.350 0.650 37 H 0.348 0.652 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.014 0.986 41 H 0.017 0.983 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 0.938 -18.273 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C -0.010 4.010 4 H 0.108 0.892 5 C -0.191 4.191 6 C -0.187 4.187 7 C 0.023 3.977 8 H 0.144 0.856 9 N -0.344 5.344 10 C -0.076 4.076 11 C 0.317 3.683 12 O -0.407 6.407 13 C -0.044 4.044 14 H 0.115 0.885 15 N -0.363 5.363 16 C -0.171 4.171 17 C -0.048 4.048 18 C -0.562 4.562 19 H 0.089 0.911 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.032 0.968 41 H 0.035 0.965 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.221 0.396 -18.678 20.029 hybrid contribution -0.730 0.769 1.156 1.568 sum 6.491 1.165 -17.522 18.722 Atomic orbital electron populations 1.22803 0.81120 1.02859 0.99924 1.87971 1.19712 1.26922 1.94454 1.24427 0.94715 0.85888 0.96001 0.89166 1.23270 0.97822 1.01212 0.96760 1.23151 0.99929 0.99543 0.96073 1.22933 0.95724 0.98180 0.80885 0.85598 1.47794 1.64084 1.15738 1.06770 1.21971 0.99169 0.82394 1.04107 1.20842 0.75653 0.85967 0.85872 1.90635 1.45272 1.18669 1.86078 1.21548 0.94205 0.98585 0.90019 0.88532 1.58746 1.53332 1.07563 1.16630 1.22249 0.93201 1.02022 0.99594 1.19577 0.98301 0.94759 0.92132 1.21057 0.94400 1.33772 1.06951 0.91101 1.25039 0.95252 0.95928 0.97158 1.69911 1.18699 1.44221 1.21084 0.86767 0.82680 0.80574 0.79182 1.20250 1.21315 1.18955 0.94211 0.89668 0.93738 0.90668 0.88928 0.89255 0.90062 0.92338 0.91296 0.89349 0.83516 0.83843 0.91984 0.91833 0.96817 0.96529 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.85 101.05 1.10 1.41 16 2 O -0.37 -4.97 10.71 -35.23 -0.38 -5.35 16 3 C 0.05 0.55 3.84 -25.92 -0.10 0.45 16 4 H 0.09 0.93 6.45 -51.93 -0.33 0.60 16 5 C -0.15 -1.31 7.91 -25.92 -0.21 -1.52 16 6 C -0.15 -1.32 7.55 -25.92 -0.20 -1.52 16 7 C 0.13 1.59 4.06 -67.12 -0.27 1.31 16 8 H 0.13 1.88 7.20 -51.93 -0.37 1.50 16 9 N -0.61 -8.32 3.09 -173.00 -0.53 -8.85 16 10 C 0.07 0.71 8.45 59.85 0.51 1.22 16 11 C 0.53 8.98 6.93 -10.99 -0.08 8.91 16 12 O -0.53 -10.72 15.72 5.56 0.09 -10.64 16 13 C 0.07 1.18 2.36 -68.86 -0.16 1.02 16 14 H 0.10 1.46 7.21 -51.92 -0.37 1.08 16 15 N -0.83 -13.85 8.94 -5.65 -0.05 -13.90 16 16 C -0.13 -2.49 4.45 -26.73 -0.12 -2.60 16 17 C -0.01 -0.23 3.81 -27.88 -0.11 -0.33 16 18 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 19 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 22 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.69 6.89 -51.93 -0.36 0.33 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.60 6.31 -51.93 -0.33 0.27 16 35 H 0.09 1.06 4.83 -51.93 -0.25 0.81 16 36 H 0.35 5.60 7.55 -39.29 -0.30 5.31 16 37 H 0.35 5.96 8.58 -39.29 -0.34 5.62 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.17 6.43 -51.93 -0.33 0.83 16 40 H 0.01 0.29 7.58 -51.93 -0.39 -0.10 16 41 H 0.02 0.37 5.91 -51.93 -0.31 0.06 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 332.35 15.07 5.01 5.01 Total: -1.00 -32.85 332.35 -6.48 -39.33 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.66 Total: 9.13 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.06 Total: -4.56 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.19 Total: -49.16 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.29 Total: -15.98 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.85 -6.48 -39.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724138828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.902 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds