Wall clock time and date at job start Mon Mar 30 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99879 * 2 1 4 4 H 1.09004 * 112.90608 * 18.74754 * 3 2 1 5 5 C 1.53777 * 113.61630 * 247.49718 * 3 2 1 6 6 C 1.53778 * 87.08106 * 220.01642 * 5 3 2 7 7 C 1.53780 * 87.08240 * 25.43378 * 6 5 3 8 8 H 1.08994 * 113.61806 * 89.19601 * 7 6 5 9 9 N 1.46501 * 113.61239 * 220.01939 * 7 6 5 10 10 C 1.46498 * 119.99979 * 40.49300 * 9 7 6 11 11 C 1.34772 * 119.99949 * 220.49055 * 9 7 6 12 12 O 1.21281 * 120.00219 * 0.02562 * 11 9 7 13 13 C 1.50703 * 120.00082 * 180.02562 * 11 9 7 14 14 H 1.09007 * 109.47034 * 320.00063 * 13 11 9 15 15 N 1.46903 * 109.47118 * 200.00410 * 13 11 9 16 16 C 1.52994 * 109.47288 * 80.00101 * 13 11 9 17 17 C 1.53001 * 109.47367 * 185.00208 * 16 13 11 18 18 C 1.50697 * 109.46995 * 180.02562 * 17 16 13 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 H 1.09000 * 109.47424 * 60.00586 * 1 2 3 27 27 H 1.09010 * 109.46798 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47174 * 299.99772 * 1 2 3 29 29 H 1.08999 * 113.61375 * 105.46358 * 5 3 2 30 30 H 1.09001 * 113.68778 * 334.57532 * 5 3 2 31 31 H 1.09001 * 113.61440 * 270.88162 * 6 5 3 32 32 H 1.09005 * 113.61243 * 139.98094 * 6 5 3 33 33 H 1.09000 * 109.47168 * 270.00036 * 10 9 7 34 34 H 1.08999 * 109.47092 * 30.00060 * 10 9 7 35 35 H 1.09006 * 109.47485 * 149.99753 * 10 9 7 36 36 H 1.00895 * 111.00058 * 176.04762 * 15 13 11 37 37 H 1.00906 * 110.99529 * 299.99924 * 15 13 11 38 38 H 1.08998 * 109.47353 * 64.99986 * 16 13 11 39 39 H 1.09006 * 109.47395 * 305.00242 * 16 13 11 40 40 H 1.08998 * 109.47065 * 59.99602 * 17 16 13 41 41 H 1.09001 * 109.46892 * 299.99866 * 17 16 13 42 42 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3141 2.0798 0.3227 5 6 2.7534 1.6490 -1.3017 6 6 3.8226 2.3183 -0.4221 7 6 3.3755 1.3720 0.7046 8 1 3.9098 0.4221 0.7147 9 7 3.3255 2.0107 2.0221 10 6 2.8075 3.3745 2.1558 11 6 3.7560 1.3436 3.1111 12 8 4.1853 0.2148 3.0004 13 6 3.7041 2.0004 4.4665 14 1 3.9937 3.0473 4.3743 15 7 4.6294 1.3149 5.3786 16 6 2.2813 1.9119 5.0219 17 6 2.1989 2.6860 6.3391 18 6 0.7976 2.5982 6.8865 19 1 0.0403 2.0494 6.3465 20 6 0.4810 3.2230 8.0742 21 7 -0.7432 3.1510 8.5492 22 14 1.7912 4.1716 9.0086 23 1 1.7975 5.5853 8.5540 24 1 1.4964 4.1207 10.4631 25 1 3.1211 3.5630 8.7515 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2139 2.3477 -1.9411 30 1 3.1170 0.7750 -1.8420 31 1 3.6220 3.3695 -0.2149 32 1 4.8425 2.1401 -0.7630 33 1 3.6252 4.0864 2.0437 34 1 2.0593 3.5562 1.3843 35 1 2.3524 3.4957 3.1389 36 1 4.6611 1.7761 6.2754 37 1 4.3819 0.3420 5.4808 38 1 2.0241 0.8674 5.1977 39 1 1.5833 2.3420 4.3035 40 1 2.4560 3.7305 6.1634 41 1 2.8968 2.2559 7.0575 42 1 -0.9658 3.5902 9.3849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724138828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:17 Heat of formation + Delta-G solvation = -86.407882 kcal Electronic energy + Delta-G solvation = -21639.447425 eV Core-core repulsion = 18426.259429 eV Total energy + Delta-G solvation = -3213.187996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61497 -39.97455 -37.46180 -37.11730 -35.23111 -34.76462 -32.10432 -28.83371 -28.16308 -27.86592 -26.55119 -25.42100 -24.50085 -22.12090 -20.76274 -20.13408 -19.11566 -18.64328 -17.80906 -17.58588 -16.52895 -16.38380 -16.13094 -15.90545 -15.82524 -15.52871 -15.06699 -14.72114 -14.54957 -14.07607 -13.84062 -13.65244 -13.53186 -13.34588 -13.21093 -12.87205 -12.70822 -12.64114 -12.35028 -12.11473 -12.05219 -11.86584 -11.68530 -11.42641 -11.39756 -10.83427 -10.77312 -10.53164 -9.72473 -9.56755 -8.30064 -6.35836 1.38152 1.41036 1.51777 1.54034 1.91663 2.36356 2.89438 3.05624 3.40240 3.58659 3.59219 3.70070 3.83070 3.89105 4.05008 4.14034 4.19413 4.32180 4.47763 4.50485 4.52349 4.64517 4.66727 4.71700 4.77160 4.83311 4.87503 4.93492 4.98758 5.02429 5.25480 5.35842 5.43595 5.55856 5.61678 6.01002 6.23612 6.24590 6.35894 6.46257 6.72306 7.13997 7.29136 8.86750 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.004549 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.930358 B = 6153.914539 C = 6661.821441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.042 3.958 4 H 0.101 0.899 5 C -0.138 4.138 6 C -0.131 4.131 7 C 0.107 3.893 8 H 0.093 0.907 9 N -0.603 5.603 10 C 0.058 3.942 11 C 0.520 3.480 12 O -0.575 6.575 13 C 0.082 3.918 14 H 0.121 0.879 15 N -0.831 5.831 16 C -0.118 4.118 17 C -0.004 4.004 18 C -0.535 4.535 19 H 0.025 0.975 20 C 0.004 3.996 21 N -0.953 5.953 22 Si 0.953 3.047 23 H -0.262 1.262 24 H -0.290 1.290 25 H -0.240 1.240 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.355 0.645 37 H 0.343 0.657 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.033 0.967 41 H 0.024 0.976 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 3.328 -19.555 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.017 4.017 4 H 0.119 0.881 5 C -0.176 4.176 6 C -0.169 4.169 7 C 0.003 3.997 8 H 0.111 0.889 9 N -0.335 5.335 10 C -0.083 4.083 11 C 0.308 3.692 12 O -0.454 6.454 13 C -0.033 4.033 14 H 0.139 0.861 15 N -0.362 5.362 16 C -0.158 4.158 17 C -0.042 4.042 18 C -0.573 4.573 19 H 0.043 0.957 20 C -0.192 4.192 21 N -0.593 5.593 22 Si 0.776 3.224 23 H -0.187 1.187 24 H -0.216 1.216 25 H -0.163 1.163 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.053 0.947 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.170 0.830 37 H 0.156 0.844 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.883 2.815 -20.006 22.069 hybrid contribution -1.362 -0.035 1.493 2.021 sum 7.521 2.780 -18.512 20.174 Atomic orbital electron populations 1.22918 0.79979 1.03531 1.00566 1.87935 1.21153 1.28501 1.94702 1.24642 0.94199 0.85401 0.97423 0.88110 1.23201 0.97143 1.01490 0.95811 1.23140 1.00432 0.99731 0.93630 1.23160 0.97111 0.98145 0.81248 0.88914 1.47887 1.62581 1.16610 1.06415 1.22221 1.00752 0.81049 1.04318 1.20953 0.75764 0.85611 0.86833 1.90614 1.47597 1.20401 1.86744 1.21470 0.92186 0.99835 0.89813 0.86123 1.58763 1.53105 1.07403 1.16971 1.22053 0.95337 0.99924 0.98483 1.19492 0.94953 0.96329 0.93399 1.21404 0.96144 1.32791 1.06917 0.95669 1.26061 0.97713 0.97161 0.98297 1.70081 1.21403 1.45933 1.21897 0.85619 0.80271 0.79493 0.77039 1.18669 1.21632 1.16264 0.91870 0.89181 0.94663 0.88095 0.89340 0.87143 0.89421 0.89632 0.88879 0.90637 0.82978 0.84357 0.94515 0.91535 0.94827 0.95762 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.85 113.37 1.23 1.76 16 2 O -0.40 -10.72 10.71 -148.98 -1.60 -12.32 16 3 C 0.04 0.88 3.84 31.12 0.12 1.00 16 4 H 0.10 1.85 6.45 -2.38 -0.02 1.83 16 5 C -0.14 -2.01 7.91 31.12 0.25 -1.76 16 6 C -0.13 -1.95 7.55 31.12 0.23 -1.71 16 7 C 0.11 2.58 4.06 45.52 0.18 2.76 16 8 H 0.09 2.87 7.20 -2.39 -0.02 2.85 16 9 N -0.60 -15.63 3.09 -819.65 -2.53 -18.16 16 10 C 0.06 1.07 8.45 127.77 1.08 2.15 16 11 C 0.52 17.50 6.93 87.66 0.61 18.10 16 12 O -0.57 -23.77 15.72 -3.03 -0.05 -23.82 16 13 C 0.08 2.60 2.36 44.17 0.10 2.71 16 14 H 0.12 3.26 7.21 -2.38 -0.02 3.24 16 15 N -0.83 -26.74 8.94 -171.79 -1.54 -28.28 16 16 C -0.12 -4.45 4.45 30.59 0.14 -4.31 16 17 C 0.00 -0.18 3.81 29.85 0.11 -0.07 16 18 C -0.53 -29.83 9.66 25.60 0.25 -29.59 16 19 H 0.02 1.58 7.99 -2.92 -0.02 1.55 16 20 C 0.00 0.25 5.47 84.66 0.46 0.72 16 21 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 22 Si 0.95 42.08 27.47 68.60 1.88 43.96 16 23 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.68 8.14 -2.38 -0.02 1.67 16 28 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 1.20 6.89 -2.39 -0.02 1.19 16 32 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.27 6.31 -2.39 -0.02 1.26 16 35 H 0.08 1.62 4.83 -2.38 -0.01 1.61 16 36 H 0.35 10.61 7.55 -89.70 -0.68 9.94 16 37 H 0.34 11.75 8.58 -89.69 -0.77 10.98 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 2.43 6.43 -2.38 -0.02 2.42 16 40 H 0.03 1.33 7.58 -2.39 -0.02 1.31 16 41 H 0.02 1.01 5.91 -2.39 -0.01 1.00 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -74.12 332.35 0.77 -73.35 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.47 Total: 32.05 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.77 Total: -8.23 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -3.76 Total: -104.99 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.64 Total: -36.13 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.96 kcal Total: -74.12 0.77 -73.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724138828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.054 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds