Wall clock time and date at job start Mon Mar 30 2020 05:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46884 * 2 1 4 4 C 1.46910 * 110.99817 * 67.16899 * 3 2 1 5 5 C 1.50700 * 109.47138 * 73.58096 * 4 3 2 6 6 O 1.21281 * 119.99695 * 5.86986 * 5 4 3 7 7 N 1.34771 * 119.99850 * 185.86506 * 5 4 3 8 8 C 1.46501 * 119.99931 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47072 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99660 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99504 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99733 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00436 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46808 * 90.00151 * 13 11 9 15 15 H 1.48498 * 109.47156 * 210.00093 * 13 11 9 16 16 H 1.48498 * 109.47435 * 330.00298 * 13 11 9 17 17 C 1.46896 * 111.00133 * 303.21580 * 3 2 1 18 18 H 1.09002 * 109.52332 * 63.82603 * 17 3 2 19 19 C 1.53183 * 109.52138 * 303.63845 * 17 3 2 20 20 C 1.53175 * 109.03810 * 183.11390 * 19 17 3 21 21 C 1.53092 * 109.16234 * 56.98015 * 20 19 17 22 22 O 1.42908 * 109.41655 * 302.39011 * 21 20 19 23 23 C 1.42904 * 114.09315 * 61.15950 * 22 21 20 24 24 H 1.08999 * 109.47442 * 302.44684 * 1 2 3 25 25 H 1.09004 * 109.46682 * 182.44713 * 1 2 3 26 26 H 1.08994 * 109.47283 * 62.45224 * 1 2 3 27 27 H 1.09004 * 109.47181 * 119.99591 * 2 1 3 28 28 H 1.09002 * 109.47520 * 240.00157 * 2 1 3 29 29 H 1.08998 * 109.46810 * 193.58194 * 4 3 2 30 30 H 1.08997 * 109.46941 * 313.57873 * 4 3 2 31 31 H 0.97000 * 120.00248 * 0.02562 * 7 5 4 32 32 H 1.09002 * 109.46949 * 299.99596 * 8 7 5 33 33 H 1.08994 * 109.47279 * 59.99561 * 8 7 5 34 34 H 0.96995 * 120.00072 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.54017 * 302.98425 * 19 17 3 36 36 H 1.09004 * 109.54158 * 63.24886 * 19 17 3 37 37 H 1.09006 * 109.52060 * 297.07946 * 20 19 17 38 38 H 1.08993 * 109.57275 * 176.91844 * 20 19 17 39 39 H 1.08996 * 109.48199 * 182.41239 * 21 20 19 40 40 H 1.09001 * 109.48911 * 62.37723 * 21 20 19 41 41 H 1.09003 * 109.47929 * 178.86270 * 23 22 21 42 42 H 1.09000 * 109.48516 * 58.82584 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6933 2.0587 1.2641 5 6 2.5884 1.5356 2.3578 6 8 3.4861 0.7652 2.0901 7 7 2.3914 1.9238 3.6332 8 6 3.2619 1.4157 4.6964 9 6 2.8327 1.9982 6.0184 10 1 1.9956 2.6791 6.0621 11 6 3.5089 1.6617 7.1719 12 7 3.1348 2.1704 8.3255 13 14 4.9564 0.4834 7.0962 14 1 6.2091 1.2514 6.8818 15 1 5.0495 -0.2690 8.3731 16 1 4.7614 -0.4689 5.9736 17 6 1.4868 2.1318 -1.1473 18 1 0.4025 2.2048 -1.0626 19 6 1.8524 1.4052 -2.4454 20 6 1.3597 2.2323 -3.6367 21 6 1.9719 3.6336 -3.5631 22 8 1.6189 4.2414 -2.3188 23 6 2.0941 3.5369 -1.1699 24 1 -0.3634 0.5513 0.8672 25 1 -0.3633 -1.0268 0.0439 26 1 -0.3633 0.4752 -0.9111 27 1 1.8934 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8447 3.1324 1.1531 30 1 0.6524 1.8633 1.5218 31 1 1.6733 2.5397 3.8473 32 1 3.1885 0.3289 4.7376 33 1 4.2930 1.7026 4.4900 34 1 3.6102 1.9334 9.1371 35 1 2.9344 1.2880 -2.5053 36 1 1.3766 0.4245 -2.4607 37 1 0.2728 2.3075 -3.6034 38 1 1.6633 1.7506 -4.5661 39 1 1.5912 4.2402 -4.3847 40 1 3.0569 3.5608 -3.6372 41 1 1.8014 4.0738 -0.2675 42 1 3.1807 3.4627 -1.2126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844404250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:34 Heat of formation + Delta-G solvation = -78.601531 kcal Electronic energy + Delta-G solvation = -21491.122239 eV Core-core repulsion = 18278.272751 eV Total energy + Delta-G solvation = -3212.849487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24384 -38.84433 -37.05106 -34.22220 -33.27066 -32.34535 -31.35437 -29.98264 -28.09511 -26.26571 -25.14924 -23.47671 -22.38295 -21.38400 -19.91252 -19.44989 -17.34539 -16.91406 -16.61078 -15.88523 -15.64008 -15.47592 -15.02478 -14.72540 -14.48750 -14.04107 -14.02145 -13.74710 -13.13737 -13.00136 -12.75594 -12.55995 -12.37557 -12.22130 -11.92520 -11.82400 -11.48897 -11.35944 -11.06483 -10.98198 -10.79874 -10.68440 -10.41631 -9.96684 -9.67375 -9.49005 -9.16471 -8.77019 -8.26907 -8.09866 -6.21184 -4.23310 3.25333 3.27820 3.33499 3.39603 3.42472 3.79600 4.24622 4.34078 4.49938 4.59701 4.64692 4.77639 4.97824 5.05410 5.09452 5.14258 5.17025 5.24276 5.31744 5.35709 5.38651 5.50747 5.53057 5.59369 5.67190 5.71856 5.78328 5.83485 5.94853 6.03982 6.23278 6.75886 6.86129 6.96037 7.08650 7.12406 7.26485 7.41087 8.16202 8.54241 8.76647 8.99472 9.39315 10.90826 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033324 B = 0.003743 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.045793 B = 7478.168140 C = 7729.206181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.050 3.950 3 N -0.508 5.508 4 C 0.024 3.976 5 C 0.501 3.499 6 O -0.539 6.539 7 N -0.710 5.710 8 C 0.223 3.777 9 C -0.543 4.543 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.893 5.893 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.261 1.261 17 C 0.050 3.950 18 H 0.054 0.946 19 C -0.117 4.117 20 C -0.154 4.154 21 C 0.058 3.942 22 O -0.382 6.382 23 C 0.063 3.937 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.395 0.605 32 H 0.024 0.976 33 H 0.020 0.980 34 H 0.267 0.733 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 0.090 -22.819 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.078 4.078 3 N -0.232 5.232 4 C -0.107 4.107 5 C 0.285 3.715 6 O -0.416 6.416 7 N -0.359 5.359 8 C 0.100 3.900 9 C -0.581 4.581 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.530 5.530 13 Si 0.704 3.296 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.185 1.185 17 C -0.059 4.059 18 H 0.071 0.929 19 C -0.154 4.154 20 C -0.192 4.192 21 C -0.019 4.019 22 O -0.299 6.299 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.729 -0.301 -22.822 23.309 hybrid contribution -0.406 -0.516 0.405 0.771 sum -5.136 -0.817 -22.417 23.012 Atomic orbital electron populations 1.22475 0.98561 1.02514 1.01804 1.22224 0.92170 0.89524 1.03888 1.61825 1.59036 1.02071 1.00287 1.22168 0.98307 1.00137 0.90105 1.20329 0.85437 0.82180 0.83557 1.90644 1.32869 1.35387 1.82717 1.46180 1.35135 1.47874 1.06745 1.19455 0.90047 0.94980 0.85492 1.21104 1.17863 1.29518 0.89622 0.90283 1.24802 0.97146 0.95672 0.95038 1.69881 1.40952 1.43691 0.98515 0.86808 0.82989 0.81811 0.78028 1.19836 1.20937 1.18520 1.22260 0.97919 0.94452 0.91234 0.92860 1.21690 1.02391 0.98730 0.92623 1.22202 1.01604 0.96524 0.98862 1.22600 0.99028 0.93628 0.86648 1.87953 1.78171 1.49966 1.13841 1.22714 0.98920 0.91272 0.88512 0.92383 0.91937 0.92559 0.89495 0.90423 0.88110 0.91640 0.77193 0.95851 0.96207 0.92274 0.90641 0.91152 0.91209 0.90668 0.89000 0.92986 0.88690 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 9.13 37.16 0.34 -1.68 16 2 C 0.05 0.62 5.26 -3.82 -0.02 0.60 16 3 N -0.51 -6.66 4.14 -227.90 -0.94 -7.61 16 4 C 0.02 0.33 5.22 -4.97 -0.03 0.30 16 5 C 0.50 9.40 7.39 -10.99 -0.08 9.32 16 6 O -0.54 -12.15 15.31 5.56 0.09 -12.06 16 7 N -0.71 -14.23 5.55 -61.47 -0.34 -14.57 16 8 C 0.22 5.47 4.50 -5.19 -0.02 5.45 16 9 C -0.54 -14.90 9.83 -34.44 -0.34 -15.24 16 10 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 12 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 13 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 17 C 0.05 0.54 1.55 -67.57 -0.10 0.43 16 18 H 0.05 0.57 6.53 -51.93 -0.34 0.23 16 19 C -0.12 -1.08 4.78 -26.55 -0.13 -1.21 16 20 C -0.15 -1.17 6.14 -26.59 -0.16 -1.34 16 21 C 0.06 0.48 6.84 37.21 0.25 0.74 16 22 O -0.38 -4.26 10.77 -35.23 -0.38 -4.64 16 23 C 0.06 0.69 5.88 37.21 0.22 0.91 16 24 H 0.06 0.63 6.26 -51.93 -0.33 0.31 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.53 6.29 -51.93 -0.33 0.20 16 27 H 0.09 1.34 6.70 -51.93 -0.35 0.99 16 28 H 0.08 0.89 6.51 -51.93 -0.34 0.55 16 29 H 0.10 1.20 5.63 -51.93 -0.29 0.91 16 30 H 0.07 0.79 6.01 -51.93 -0.31 0.48 16 31 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 32 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 33 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.62 6.33 -51.93 -0.33 0.29 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 1.00 6.20 -51.93 -0.32 0.68 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -32.12 322.66 -7.36 -39.48 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.58 Total: 3.09 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -0.17 Total: 0.38 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.51 Total: -47.97 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.29 Total: -16.70 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.12 -7.36 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844404250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.118 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds