Wall clock time and date at job start Mon Mar 30 2020 05:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46884 * 2 1 4 4 C 1.46910 * 110.99817 * 67.16899 * 3 2 1 5 5 C 1.50700 * 109.47138 * 73.58096 * 4 3 2 6 6 O 1.21281 * 119.99695 * 5.86986 * 5 4 3 7 7 N 1.34771 * 119.99850 * 185.86506 * 5 4 3 8 8 C 1.46501 * 119.99931 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47072 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99660 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99504 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99733 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00436 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46808 * 90.00151 * 13 11 9 15 15 H 1.48498 * 109.47156 * 210.00093 * 13 11 9 16 16 H 1.48498 * 109.47435 * 330.00298 * 13 11 9 17 17 C 1.46896 * 111.00133 * 303.21580 * 3 2 1 18 18 H 1.09002 * 109.52332 * 63.82603 * 17 3 2 19 19 C 1.53183 * 109.52138 * 303.63845 * 17 3 2 20 20 C 1.53175 * 109.03810 * 183.11390 * 19 17 3 21 21 C 1.53092 * 109.16234 * 56.98015 * 20 19 17 22 22 O 1.42908 * 109.41655 * 302.39011 * 21 20 19 23 23 C 1.42904 * 114.09315 * 61.15950 * 22 21 20 24 24 H 1.08999 * 109.47442 * 302.44684 * 1 2 3 25 25 H 1.09004 * 109.46682 * 182.44713 * 1 2 3 26 26 H 1.08994 * 109.47283 * 62.45224 * 1 2 3 27 27 H 1.09004 * 109.47181 * 119.99591 * 2 1 3 28 28 H 1.09002 * 109.47520 * 240.00157 * 2 1 3 29 29 H 1.08998 * 109.46810 * 193.58194 * 4 3 2 30 30 H 1.08997 * 109.46941 * 313.57873 * 4 3 2 31 31 H 0.97000 * 120.00248 * 0.02562 * 7 5 4 32 32 H 1.09002 * 109.46949 * 299.99596 * 8 7 5 33 33 H 1.08994 * 109.47279 * 59.99561 * 8 7 5 34 34 H 0.96995 * 120.00072 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.54017 * 302.98425 * 19 17 3 36 36 H 1.09004 * 109.54158 * 63.24886 * 19 17 3 37 37 H 1.09006 * 109.52060 * 297.07946 * 20 19 17 38 38 H 1.08993 * 109.57275 * 176.91844 * 20 19 17 39 39 H 1.08996 * 109.48199 * 182.41239 * 21 20 19 40 40 H 1.09001 * 109.48911 * 62.37723 * 21 20 19 41 41 H 1.09003 * 109.47929 * 178.86270 * 23 22 21 42 42 H 1.09000 * 109.48516 * 58.82584 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6933 2.0587 1.2641 5 6 2.5884 1.5356 2.3578 6 8 3.4861 0.7652 2.0901 7 7 2.3914 1.9238 3.6332 8 6 3.2619 1.4157 4.6964 9 6 2.8327 1.9982 6.0184 10 1 1.9956 2.6791 6.0621 11 6 3.5089 1.6617 7.1719 12 7 3.1348 2.1704 8.3255 13 14 4.9564 0.4834 7.0962 14 1 6.2091 1.2514 6.8818 15 1 5.0495 -0.2690 8.3731 16 1 4.7614 -0.4689 5.9736 17 6 1.4868 2.1318 -1.1473 18 1 0.4025 2.2048 -1.0626 19 6 1.8524 1.4052 -2.4454 20 6 1.3597 2.2323 -3.6367 21 6 1.9719 3.6336 -3.5631 22 8 1.6189 4.2414 -2.3188 23 6 2.0941 3.5369 -1.1699 24 1 -0.3634 0.5513 0.8672 25 1 -0.3633 -1.0268 0.0439 26 1 -0.3633 0.4752 -0.9111 27 1 1.8934 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8447 3.1324 1.1531 30 1 0.6524 1.8633 1.5218 31 1 1.6733 2.5397 3.8473 32 1 3.1885 0.3289 4.7376 33 1 4.2930 1.7026 4.4900 34 1 3.6102 1.9334 9.1371 35 1 2.9344 1.2880 -2.5053 36 1 1.3766 0.4245 -2.4607 37 1 0.2728 2.3075 -3.6034 38 1 1.6633 1.7506 -4.5661 39 1 1.5912 4.2402 -4.3847 40 1 3.0569 3.5608 -3.6372 41 1 1.8014 4.0738 -0.2675 42 1 3.1807 3.4627 -1.2126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844404250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:34 Heat of formation + Delta-G solvation = -103.248563 kcal Electronic energy + Delta-G solvation = -21492.191014 eV Core-core repulsion = 18278.272751 eV Total energy + Delta-G solvation = -3213.918263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25288 -40.13616 -38.09894 -36.07312 -34.39587 -34.01893 -32.22487 -31.16985 -29.71818 -27.43452 -25.99591 -24.32080 -24.08024 -22.51777 -21.33467 -20.43745 -19.10183 -18.03169 -17.57079 -17.43296 -16.97264 -16.46177 -16.17307 -15.97559 -15.78002 -15.35823 -15.17366 -14.84053 -14.56196 -14.21586 -14.19310 -13.77285 -13.56985 -13.44539 -13.06890 -12.89388 -12.73736 -12.62918 -12.43134 -12.07640 -11.93872 -11.73864 -11.68318 -11.64922 -11.20206 -10.91981 -10.73621 -10.42846 -9.89053 -9.24981 -8.40263 -6.47042 1.32376 1.34526 1.47122 1.77807 2.23913 2.28341 2.81196 2.95211 3.16737 3.68678 3.82935 3.87925 4.00083 4.07850 4.15689 4.20943 4.27966 4.30959 4.36232 4.49581 4.53904 4.69705 4.74236 4.81409 4.84165 4.96626 4.98374 4.99237 5.03774 5.05424 5.13086 5.26326 5.27433 5.38688 5.55250 5.87678 6.02390 6.11128 6.30383 6.54309 6.89694 7.16523 7.47205 8.74532 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033324 B = 0.003743 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.045793 B = 7478.168140 C = 7729.206181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 N -0.525 5.525 4 C 0.035 3.965 5 C 0.501 3.499 6 O -0.578 6.578 7 N -0.710 5.710 8 C 0.235 3.765 9 C -0.546 4.546 10 H 0.060 0.940 11 C 0.026 3.974 12 N -0.932 5.932 13 Si 0.938 3.062 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.261 1.261 17 C 0.055 3.945 18 H 0.061 0.939 19 C -0.116 4.116 20 C -0.146 4.146 21 C 0.049 3.951 22 O -0.396 6.396 23 C 0.063 3.937 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.407 0.593 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.272 0.728 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 -0.089 -24.844 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.076 4.076 3 N -0.250 5.250 4 C -0.095 4.095 5 C 0.287 3.713 6 O -0.457 6.457 7 N -0.361 5.361 8 C 0.111 3.889 9 C -0.584 4.584 10 H 0.078 0.922 11 C -0.174 4.174 12 N -0.570 5.570 13 Si 0.761 3.239 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.186 1.186 17 C -0.053 4.053 18 H 0.079 0.921 19 C -0.153 4.153 20 C -0.184 4.184 21 C -0.027 4.027 22 O -0.314 6.314 23 C -0.014 4.014 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.140 0.860 30 H 0.105 0.895 31 H 0.243 0.757 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.329 -0.461 -24.872 25.441 hybrid contribution -0.256 -0.423 0.974 1.092 sum -5.585 -0.885 -23.898 24.558 Atomic orbital electron populations 1.22390 0.96630 1.03203 1.02265 1.22150 0.93709 0.89079 1.02685 1.61762 1.60113 1.02551 1.00611 1.22085 0.97827 1.00941 0.88693 1.21205 0.85288 0.81007 0.83751 1.90623 1.34779 1.37074 1.83248 1.46038 1.35058 1.48341 1.06620 1.19041 0.90251 0.94016 0.85619 1.21307 1.17139 1.28924 0.91010 0.92228 1.25600 0.99779 0.97283 0.94752 1.69981 1.42493 1.45259 0.99304 0.85855 0.79908 0.79823 0.78279 1.19040 1.19784 1.18574 1.22271 0.98086 0.94107 0.90793 0.92120 1.21697 1.01817 0.99263 0.92569 1.22165 1.01671 0.95733 0.98863 1.22829 0.99368 0.94440 0.86031 1.87934 1.78300 1.50592 1.14615 1.22668 0.98233 0.91539 0.88941 0.92880 0.91123 0.91064 0.92887 0.89466 0.86030 0.89472 0.75726 0.97168 0.97289 0.91853 0.91770 0.90468 0.90817 0.88744 0.87191 0.92942 0.88468 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.43 9.13 71.98 0.66 -2.77 16 2 C 0.05 1.23 5.26 86.30 0.45 1.68 16 3 N -0.53 -13.05 4.14 -874.95 -3.63 -16.68 16 4 C 0.04 0.91 5.22 85.56 0.45 1.35 16 5 C 0.50 18.58 7.39 87.66 0.65 19.23 16 6 O -0.58 -26.20 15.31 -3.03 -0.05 -26.25 16 7 N -0.71 -28.31 5.55 -466.79 -2.59 -30.90 16 8 C 0.23 11.60 4.50 85.63 0.39 11.99 16 9 C -0.55 -30.28 9.83 25.60 0.25 -30.03 16 10 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 11 C 0.03 1.48 5.47 84.65 0.46 1.95 16 12 N -0.93 -55.87 13.96 21.45 0.30 -55.57 16 13 Si 0.94 44.47 27.47 68.60 1.88 46.35 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.26 -12.33 6.54 99.48 0.65 -11.68 16 17 C 0.06 1.07 1.55 45.01 0.07 1.14 16 18 H 0.06 1.11 6.53 -2.39 -0.02 1.10 16 19 C -0.12 -1.89 4.78 30.71 0.15 -1.74 16 20 C -0.15 -1.81 6.14 30.68 0.19 -1.62 16 21 C 0.05 0.72 6.84 72.01 0.49 1.21 16 22 O -0.40 -8.09 10.77 -148.98 -1.60 -9.69 16 23 C 0.06 1.29 5.88 72.01 0.42 1.72 16 24 H 0.05 1.03 6.26 -2.39 -0.01 1.01 16 25 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.07 1.11 6.29 -2.39 -0.02 1.09 16 27 H 0.05 1.63 6.70 -2.38 -0.02 1.62 16 28 H 0.09 1.87 6.51 -2.39 -0.02 1.86 16 29 H 0.12 2.65 5.63 -2.39 -0.01 2.64 16 30 H 0.09 1.91 6.01 -2.39 -0.01 1.89 16 31 H 0.41 14.12 8.32 -92.71 -0.77 13.34 16 32 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 33 H 0.01 0.47 7.57 -2.39 -0.02 0.46 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.08 1.15 6.33 -2.38 -0.02 1.14 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 1.88 6.20 -2.39 -0.01 1.86 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.14 322.66 -0.86 -70.00 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.19 Total: 18.64 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 4.63 Total: 4.10 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -5.92 Total: -103.15 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.65 Total: -35.94 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -69.14 -0.86 -70.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844404250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.249 kcal (2) G-P(sol) polarization free energy of solvation -69.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds