Wall clock time and date at job start Mon Mar 30 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00178 * 2 1 4 4 C 1.53001 * 109.46988 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.41883 * 55.86581 * 4 3 2 6 6 C 1.54912 * 110.37403 * 178.17384 * 4 3 2 7 7 C 1.55135 * 101.65347 * 155.89967 * 6 4 3 8 8 C 1.54314 * 103.02274 * 324.34986 * 7 6 4 9 9 N 1.47445 * 107.23079 * 22.27792 * 8 7 6 10 10 N 1.36604 * 110.99764 * 123.26121 * 9 8 7 11 11 C 1.34777 * 120.00184 * 119.87431 * 10 9 8 12 12 O 1.21288 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46999 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46979 * 120.00025 * 20 18 16 23 23 H 1.48498 * 109.46942 * 239.99938 * 20 18 16 24 24 H 1.09003 * 109.47044 * 59.99831 * 1 2 3 25 25 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47049 * 299.99751 * 1 2 3 27 27 H 1.09006 * 109.47243 * 60.00500 * 3 2 1 28 28 H 1.08999 * 109.47733 * 300.00030 * 3 2 1 29 29 H 1.08997 * 110.98831 * 37.80781 * 6 4 3 30 30 H 1.08997 * 110.98843 * 273.99636 * 6 4 3 31 31 H 1.09001 * 110.70870 * 205.96303 * 7 6 4 32 32 H 1.09004 * 110.85139 * 82.79864 * 7 6 4 33 33 H 1.09000 * 109.88888 * 262.88131 * 8 7 6 34 34 H 1.08997 * 110.02666 * 141.76219 * 8 7 6 35 35 H 0.97003 * 120.00175 * 299.87439 * 10 9 8 36 36 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 37 37 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 38 38 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 39 39 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 41 41 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 42 42 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8696 0.5829 -0.8446 6 6 4.1878 2.5888 -0.0456 7 6 5.5791 2.3088 0.5811 8 6 5.2687 1.2460 1.6560 9 7 4.0044 0.5921 1.2714 10 7 4.1688 -0.7586 1.1506 11 6 3.4520 -1.5967 1.9254 12 8 2.6607 -1.1516 2.7296 13 6 3.6338 -3.0868 1.7925 14 6 2.7086 -3.8034 2.7780 15 6 2.8937 -5.3162 2.6435 16 6 1.9818 -6.0220 3.6139 17 1 1.3354 -5.4489 4.2619 18 6 1.9730 -7.3994 3.6742 19 7 2.7599 -8.0973 2.8847 20 14 0.8433 -8.2743 4.8774 21 1 0.0650 -7.2697 5.6457 22 1 -0.0891 -9.1557 4.1296 23 1 1.6554 -9.0931 5.8130 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.6243 3.3011 0.5570 30 1 4.2858 2.9401 -1.0728 31 1 5.9849 3.2116 1.0377 32 1 6.2681 1.9127 -0.1649 33 1 5.1577 1.7242 2.6292 34 1 6.0707 0.5088 1.6945 35 1 4.8015 -1.1145 0.5072 36 1 4.6695 -3.3473 2.0107 37 1 3.3886 -3.3934 0.7757 38 1 1.6730 -3.5428 2.5594 39 1 2.9535 -3.4967 3.7949 40 1 2.6491 -5.6232 1.6266 41 1 3.9292 -5.5764 2.8624 42 1 2.7534 -9.0664 2.9269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862588036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:13 Heat of formation + Delta-G solvation = -64.256032 kcal Electronic energy + Delta-G solvation = -21222.631288 eV Core-core repulsion = 18010.403868 eV Total energy + Delta-G solvation = -3212.227420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.21642 -38.28384 -37.28524 -34.19784 -33.89707 -31.93371 -30.89744 -29.35770 -27.32175 -26.72791 -24.75754 -23.64341 -21.58729 -21.01524 -20.45685 -19.62187 -17.62569 -16.86077 -16.23995 -16.12511 -15.83820 -15.41817 -15.09532 -14.62981 -14.36009 -14.04435 -13.86703 -13.21511 -13.13623 -12.61630 -12.51535 -12.19464 -12.05911 -11.69705 -11.61085 -11.38945 -11.25970 -11.21200 -11.02894 -10.75318 -10.49681 -10.45679 -9.60854 -9.57089 -9.44155 -9.15647 -8.93574 -8.87960 -8.81861 -8.26304 -5.91954 -3.92719 2.90343 3.26845 3.37667 3.44723 3.51007 3.66868 4.13028 4.30670 4.54413 4.58002 4.78179 4.90474 5.06022 5.14293 5.26743 5.28155 5.37278 5.38955 5.40434 5.44185 5.48099 5.54806 5.62403 5.75473 5.81273 5.84113 5.86281 5.87312 6.37919 6.54234 6.85224 7.04761 7.23367 7.26074 7.58772 7.76394 7.79860 7.92735 8.09863 8.54268 8.97288 9.14857 9.70879 11.19666 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.003604 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.419362 B = 7766.984725 C = 8346.180667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.376 6.376 3 C 0.081 3.919 4 C 0.054 3.946 5 H 0.071 0.929 6 C -0.122 4.122 7 C -0.142 4.142 8 C 0.020 3.980 9 N -0.273 5.273 10 N -0.589 5.589 11 C 0.535 3.465 12 O -0.510 6.510 13 C -0.133 4.133 14 C -0.092 4.092 15 C 0.020 3.980 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.033 0.967 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.376 0.624 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 22.582 -9.888 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.294 6.294 3 C 0.003 3.997 4 C -0.055 4.055 5 H 0.089 0.911 6 C -0.161 4.161 7 C -0.181 4.181 8 C -0.108 4.108 9 N -0.090 5.090 10 N -0.337 5.337 11 C 0.323 3.677 12 O -0.382 6.382 13 C -0.174 4.174 14 C -0.130 4.130 15 C -0.017 4.017 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.052 0.948 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.213 0.787 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.052 22.589 -8.915 24.621 hybrid contribution 0.215 -0.522 -0.459 0.727 sum 4.266 22.068 -9.374 24.353 Atomic orbital electron populations 1.22682 0.81151 1.02952 0.99210 1.87954 1.19431 1.26788 1.95203 1.22374 0.91808 0.85722 0.99788 1.23113 0.94862 0.95430 0.92074 0.91100 1.22671 0.95839 0.95778 1.01780 1.22804 0.97056 0.99811 0.98400 1.23414 0.91040 0.96639 0.99661 1.64394 1.25792 0.90855 1.27979 1.45758 1.45141 1.00166 1.42625 1.21020 0.79147 0.88219 0.79329 1.90630 1.34091 1.78281 1.35150 1.21802 1.02999 0.89298 1.03307 1.21418 0.97477 0.97415 0.96717 1.19142 0.97023 0.88465 0.97106 1.21329 1.22334 0.91302 1.20318 0.92515 1.25022 0.95854 0.97722 0.95991 1.69974 1.38893 1.06152 1.38823 0.86550 0.80759 0.79643 0.81171 1.19670 1.21099 1.21093 0.94822 0.89538 0.94125 0.92583 0.93429 0.90008 0.90162 0.90166 0.91174 0.89346 0.91376 0.78652 0.89726 0.89507 0.92651 0.92769 0.96618 0.96657 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -5.52 10.65 -35.23 -0.38 -5.89 16 3 C 0.08 0.93 5.62 37.16 0.21 1.13 16 4 C 0.05 0.56 2.94 -66.19 -0.19 0.36 16 5 H 0.07 0.72 8.01 -51.93 -0.42 0.31 16 6 C -0.12 -0.86 6.50 -24.59 -0.16 -1.02 16 7 C -0.14 -0.96 6.94 -24.91 -0.17 -1.13 16 8 C 0.02 0.20 7.10 -2.84 -0.02 0.18 16 9 N -0.27 -3.49 4.67 -103.85 -0.49 -3.98 16 10 N -0.59 -8.07 4.51 31.22 0.14 -7.93 16 11 C 0.54 9.48 7.92 -10.99 -0.09 9.39 16 12 O -0.51 -11.16 16.31 5.55 0.09 -11.07 16 13 C -0.13 -2.34 5.70 -27.89 -0.16 -2.50 16 14 C -0.09 -2.08 4.44 -26.73 -0.12 -2.19 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 16 C -0.51 -15.19 9.11 -34.44 -0.31 -15.50 16 17 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 20 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.63 7.84 -51.93 -0.41 0.23 16 35 H 0.38 4.07 8.83 -185.15 -1.63 2.44 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.05 1.30 8.10 -51.93 -0.42 0.88 16 39 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -35.41 348.82 -8.55 -43.96 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.75 Total: -3.08 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.14 Total: -7.83 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.39 Total: -38.68 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.28 Total: -16.96 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.41 -8.55 -43.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862588036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.293 kcal (2) G-P(sol) polarization free energy of solvation -35.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds