Wall clock time and date at job start Mon Mar 30 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00178 * 2 1 4 4 C 1.53001 * 109.46988 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.41883 * 55.86581 * 4 3 2 6 6 C 1.54912 * 110.37403 * 178.17384 * 4 3 2 7 7 C 1.55135 * 101.65347 * 155.89967 * 6 4 3 8 8 C 1.54314 * 103.02274 * 324.34986 * 7 6 4 9 9 N 1.47445 * 107.23079 * 22.27792 * 8 7 6 10 10 N 1.36604 * 110.99764 * 123.26121 * 9 8 7 11 11 C 1.34777 * 120.00184 * 119.87431 * 10 9 8 12 12 O 1.21288 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46999 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46979 * 120.00025 * 20 18 16 23 23 H 1.48498 * 109.46942 * 239.99938 * 20 18 16 24 24 H 1.09003 * 109.47044 * 59.99831 * 1 2 3 25 25 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47049 * 299.99751 * 1 2 3 27 27 H 1.09006 * 109.47243 * 60.00500 * 3 2 1 28 28 H 1.08999 * 109.47733 * 300.00030 * 3 2 1 29 29 H 1.08997 * 110.98831 * 37.80781 * 6 4 3 30 30 H 1.08997 * 110.98843 * 273.99636 * 6 4 3 31 31 H 1.09001 * 110.70870 * 205.96303 * 7 6 4 32 32 H 1.09004 * 110.85139 * 82.79864 * 7 6 4 33 33 H 1.09000 * 109.88888 * 262.88131 * 8 7 6 34 34 H 1.08997 * 110.02666 * 141.76219 * 8 7 6 35 35 H 0.97003 * 120.00175 * 299.87439 * 10 9 8 36 36 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 37 37 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 38 38 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 39 39 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 41 41 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 42 42 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8696 0.5829 -0.8446 6 6 4.1878 2.5888 -0.0456 7 6 5.5791 2.3088 0.5811 8 6 5.2687 1.2460 1.6560 9 7 4.0044 0.5921 1.2714 10 7 4.1688 -0.7586 1.1506 11 6 3.4520 -1.5967 1.9254 12 8 2.6607 -1.1516 2.7296 13 6 3.6338 -3.0868 1.7925 14 6 2.7086 -3.8034 2.7780 15 6 2.8937 -5.3162 2.6435 16 6 1.9818 -6.0220 3.6139 17 1 1.3354 -5.4489 4.2619 18 6 1.9730 -7.3994 3.6742 19 7 2.7599 -8.0973 2.8847 20 14 0.8433 -8.2743 4.8774 21 1 0.0650 -7.2697 5.6457 22 1 -0.0891 -9.1557 4.1296 23 1 1.6554 -9.0931 5.8130 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.6243 3.3011 0.5570 30 1 4.2858 2.9401 -1.0728 31 1 5.9849 3.2116 1.0377 32 1 6.2681 1.9127 -0.1649 33 1 5.1577 1.7242 2.6292 34 1 6.0707 0.5088 1.6945 35 1 4.8015 -1.1145 0.5072 36 1 4.6695 -3.3473 2.0107 37 1 3.3886 -3.3934 0.7757 38 1 1.6730 -3.5428 2.5594 39 1 2.9535 -3.4967 3.7949 40 1 2.6491 -5.6232 1.6266 41 1 3.9292 -5.5764 2.8624 42 1 2.7534 -9.0664 2.9269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862588036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:13 Heat of formation + Delta-G solvation = -88.988862 kcal Electronic energy + Delta-G solvation = -21223.703784 eV Core-core repulsion = 18010.403868 eV Total energy + Delta-G solvation = -3213.299916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24268 -39.50694 -38.28385 -36.08144 -35.06955 -33.96853 -31.67603 -30.67756 -28.91383 -27.67576 -25.88748 -25.33257 -22.63469 -22.04596 -21.63677 -21.18238 -18.74642 -18.39992 -17.82584 -17.19613 -16.97969 -16.50735 -16.45120 -16.27163 -15.68774 -15.17042 -14.86902 -14.56297 -14.32459 -14.11705 -13.77521 -13.52869 -13.30559 -13.06550 -12.87607 -12.58738 -12.49227 -12.35889 -12.23485 -12.14143 -12.08731 -11.64389 -11.52884 -11.42227 -11.21634 -10.62608 -10.57821 -10.53148 -10.05457 -9.72641 -8.18792 -6.28487 1.40220 1.40257 1.54558 1.81958 1.91150 2.42977 2.83399 3.14001 3.30380 3.67520 3.88091 4.03441 4.05456 4.15808 4.24220 4.27786 4.30265 4.44789 4.48268 4.53355 4.54576 4.68099 4.77967 4.83622 4.84442 4.94170 4.97800 5.00332 5.09061 5.13410 5.22223 5.28224 5.56243 5.76003 5.78171 5.88502 6.29073 6.31476 6.41288 6.61884 6.86883 7.39855 7.74275 8.93037 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.003604 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.419362 B = 7766.984725 C = 8346.180667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.407 6.407 3 C 0.075 3.925 4 C 0.052 3.948 5 H 0.075 0.925 6 C -0.113 4.113 7 C -0.130 4.130 8 C 0.017 3.983 9 N -0.306 5.306 10 N -0.572 5.572 11 C 0.539 3.461 12 O -0.560 6.560 13 C -0.124 4.124 14 C -0.077 4.077 15 C 0.027 3.973 16 C -0.545 4.545 17 H 0.050 0.950 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.392 0.608 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.000 1.000 41 H 0.002 0.998 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 23.762 -10.869 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.327 6.327 3 C -0.002 4.002 4 C -0.056 4.056 5 H 0.093 0.907 6 C -0.151 4.151 7 C -0.169 4.169 8 C -0.110 4.110 9 N -0.124 5.124 10 N -0.318 5.318 11 C 0.327 3.673 12 O -0.436 6.436 13 C -0.165 4.165 14 C -0.116 4.116 15 C -0.011 4.011 16 C -0.583 4.583 17 H 0.069 0.931 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.787 3.213 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.200 1.200 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.807 23.791 -9.939 26.228 hybrid contribution 0.019 -0.854 -0.186 0.874 sum 4.827 22.937 -10.125 25.533 Atomic orbital electron populations 1.22730 0.80508 1.02687 1.00254 1.87901 1.20473 1.28875 1.95410 1.22592 0.92632 0.84628 1.00377 1.23225 0.94172 0.97332 0.90908 0.90715 1.22690 0.95446 0.93590 1.03404 1.22773 0.97128 0.99391 0.97600 1.23437 0.89799 0.97421 1.00378 1.64316 1.28018 0.89991 1.30074 1.45333 1.44045 1.00871 1.41557 1.20834 0.78886 0.88419 0.79194 1.90612 1.36487 1.78983 1.37520 1.21616 1.02919 0.89382 1.02575 1.21114 0.97772 0.95250 0.97449 1.19019 0.95585 0.90918 0.95533 1.21712 1.23182 0.92234 1.21212 0.93142 1.25908 0.97367 0.98437 0.97801 1.70074 1.40072 1.06747 1.40088 0.85442 0.78730 0.78348 0.78799 1.19267 1.20029 1.20003 0.92037 0.90551 0.94743 0.94027 0.90647 0.89972 0.87610 0.88476 0.89769 0.90345 0.91054 0.76722 0.87479 0.87928 0.94353 0.94155 0.98137 0.97979 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.09 16 2 O -0.41 -11.90 10.65 -148.98 -1.59 -13.49 16 3 C 0.07 1.63 5.62 71.98 0.40 2.04 16 4 C 0.05 0.97 2.94 45.39 0.13 1.10 16 5 H 0.07 1.35 8.01 -2.39 -0.02 1.33 16 6 C -0.11 -1.25 6.50 31.98 0.21 -1.04 16 7 C -0.13 -1.34 6.94 31.77 0.22 -1.12 16 8 C 0.02 0.30 7.10 86.64 0.61 0.92 16 9 N -0.31 -7.51 4.67 -482.47 -2.26 -9.77 16 10 N -0.57 -15.13 4.51 -173.53 -0.78 -15.91 16 11 C 0.54 19.14 7.92 87.66 0.69 19.83 16 12 O -0.56 -25.20 16.31 -3.05 -0.05 -25.25 16 13 C -0.12 -4.36 5.70 29.85 0.17 -4.19 16 14 C -0.08 -3.60 4.44 30.59 0.14 -3.46 16 15 C 0.03 1.45 4.97 29.85 0.15 1.60 16 16 C -0.55 -32.87 9.11 25.60 0.23 -32.64 16 17 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 18 C 0.00 0.16 5.46 84.66 0.46 0.62 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 20 Si 0.96 46.00 29.54 68.60 2.03 48.02 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 0.93 8.06 -2.39 -0.02 0.91 16 30 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.20 7.84 -2.39 -0.02 1.18 16 35 H 0.39 7.81 8.83 -215.49 -1.90 5.91 16 36 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 39 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 40 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -77.97 348.82 1.39 -76.58 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.92 Total: 11.01 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.67 Total: -14.24 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -2.75 Total: -82.63 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.64 Total: -38.74 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.97 1.39 -76.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862588036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.404 kcal (2) G-P(sol) polarization free energy of solvation -77.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds