Wall clock time and date at job start Mon Mar 30 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46639 * 2 1 4 4 N 1.46495 * 109.47297 * 119.99922 * 2 1 3 5 5 C 1.36940 * 119.99750 * 125.59402 * 4 2 1 6 6 H 1.07998 * 119.99780 * 154.68521 * 5 4 2 7 7 C 1.38809 * 120.00089 * 334.68818 * 5 4 2 8 8 N 1.31621 * 120.00144 * 145.37500 * 7 5 4 9 9 Si 1.86803 * 120.00163 * 325.37356 * 7 5 4 10 10 H 1.48500 * 109.47001 * 88.95354 * 9 7 5 11 11 H 1.48493 * 109.47216 * 208.95580 * 9 7 5 12 12 H 1.48499 * 109.46971 * 328.95594 * 9 7 5 13 13 C 1.46495 * 120.00053 * 305.59884 * 4 2 1 14 14 C 1.53005 * 109.47070 * 269.99635 * 13 4 2 15 15 H 1.09004 * 109.53788 * 59.89356 * 14 13 4 16 16 C 1.53094 * 109.50637 * 180.02562 * 14 13 4 17 17 N 1.47014 * 109.29342 * 176.80896 * 16 14 13 18 18 C 1.46898 * 111.00013 * 177.58507 * 17 16 14 19 19 C 1.53007 * 109.47031 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47331 * 299.99508 * 18 17 16 21 21 C 1.47016 * 110.75154 * 301.36161 * 17 16 14 22 22 C 1.53088 * 109.25875 * 58.61444 * 21 17 16 23 23 O 1.43019 * 109.26198 * 303.15438 * 22 21 17 24 24 H 1.08994 * 109.47077 * 299.99723 * 1 2 3 25 25 H 1.08996 * 109.47162 * 60.00070 * 1 2 3 26 26 H 1.08999 * 109.46537 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46672 * 240.00685 * 2 1 3 28 28 H 1.09004 * 109.47155 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47490 * 299.99703 * 3 2 1 30 30 H 1.09000 * 109.47459 * 60.00641 * 3 2 1 31 31 H 0.96996 * 120.00239 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47193 * 150.00006 * 13 4 2 33 33 H 1.09000 * 109.47323 * 29.99685 * 13 4 2 34 34 H 1.08997 * 109.51265 * 56.84970 * 16 14 13 35 35 H 1.09006 * 109.50431 * 296.75941 * 16 14 13 36 36 H 1.08994 * 109.47606 * 59.99986 * 18 17 16 37 37 H 1.09002 * 109.46730 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47033 * 299.99691 * 19 18 17 39 39 H 1.09004 * 109.46779 * 59.99575 * 19 18 17 40 40 H 1.09005 * 109.46868 * 59.99546 * 20 18 17 41 41 H 1.08990 * 109.47577 * 180.02562 * 20 18 17 42 42 H 1.09004 * 109.47133 * 300.00825 * 20 18 17 43 43 H 1.09001 * 109.50801 * 178.55525 * 21 17 16 44 44 H 1.09007 * 109.50467 * 298.67813 * 21 17 16 45 45 H 1.09004 * 109.50818 * 63.08822 * 22 21 17 46 46 H 1.09007 * 109.50997 * 183.21689 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8974 -1.7334 1.0737 6 1 3.5628 -1.9773 1.8886 7 6 2.9334 -2.4770 -0.0979 8 7 4.0765 -2.9608 -0.5356 9 14 1.3593 -2.7911 -1.0535 10 1 1.1425 -1.6899 -2.0260 11 1 1.4713 -4.0801 -1.7821 12 1 0.2126 -2.8527 -0.1119 13 6 1.5663 -0.2656 2.5232 14 6 2.5149 0.8051 3.0664 15 1 2.5221 1.6617 2.3924 16 6 2.0435 1.2494 4.4536 17 7 2.9997 2.2214 5.0033 18 6 2.5532 2.7167 6.3121 19 6 3.5718 3.7231 6.8512 20 6 1.1919 3.3990 6.1619 21 6 4.3450 1.6352 5.0928 22 6 4.7943 1.1871 3.6996 23 8 3.8370 0.2669 3.1684 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 4.1015 -3.4807 -1.3541 32 1 1.5615 -1.1223 3.1970 33 1 0.5592 0.1447 2.4498 34 1 1.9852 0.3834 5.1129 35 1 1.0599 1.7122 4.3728 36 1 2.4661 1.8811 7.0065 37 1 3.2402 4.0910 7.8222 38 1 4.5414 3.2367 6.9583 39 1 3.6593 4.5588 6.1568 40 1 0.4665 2.6817 5.7780 41 1 0.8608 3.7669 7.1329 42 1 1.2790 4.2346 5.4674 43 1 5.0416 2.3798 5.4780 44 1 4.3235 0.7753 5.7624 45 1 4.8675 2.0550 3.0441 46 1 5.7670 0.7002 3.7698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080746478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:47 Heat of formation + Delta-G solvation = -7.423228 kcal Electronic energy + Delta-G solvation = -22942.828244 eV Core-core repulsion = 19868.898374 eV Total energy + Delta-G solvation = -3073.929870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.54232 -37.13952 -36.03453 -32.12204 -32.00943 -31.82829 -29.91141 -27.73827 -26.90686 -26.52818 -24.86266 -22.98474 -22.03850 -20.51486 -19.90817 -19.36295 -16.87435 -16.50964 -15.74137 -15.31285 -15.02905 -14.80543 -14.26100 -13.99104 -13.83636 -13.48358 -13.27198 -12.95448 -12.89072 -12.57381 -12.34817 -11.92994 -11.84804 -11.78359 -11.70519 -11.57529 -11.25717 -11.18402 -11.14102 -10.69213 -10.62776 -10.48639 -10.34690 -10.06144 -9.82692 -9.50054 -9.28830 -8.89127 -8.31085 -8.22703 -6.87422 -5.86907 -3.05266 3.43686 3.59762 3.61679 3.82799 4.39394 4.68306 4.77087 4.85381 4.95620 5.18725 5.22070 5.29332 5.42958 5.48876 5.52382 5.55263 5.60657 5.68952 5.69862 5.71213 5.78603 5.88473 5.90255 6.00137 6.09354 6.10682 6.12098 6.19348 6.21292 6.27253 6.32357 6.36567 6.53099 6.55753 6.67083 6.87375 7.08552 7.10114 7.11815 7.15956 7.91753 8.15627 8.53264 9.15722 9.91213 10.26000 11.28562 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.028276 B = 0.005495 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.014409 B = 5094.063448 C = 5592.199961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.147 3.853 3 C -0.158 4.158 4 N -0.586 5.586 5 C -0.246 4.246 6 H 0.089 0.911 7 C 0.029 3.971 8 N -0.888 5.888 9 Si 0.847 3.153 10 H -0.285 1.285 11 H -0.306 1.306 12 H -0.272 1.272 13 C 0.154 3.846 14 C 0.071 3.929 15 H 0.064 0.936 16 C 0.021 3.979 17 N -0.532 5.532 18 C 0.074 3.926 19 C -0.146 4.146 20 C -0.145 4.145 21 C 0.017 3.983 22 C 0.062 3.938 23 O -0.346 6.346 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.259 0.741 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.037 0.963 45 H 0.049 0.951 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 13.009 11.856 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.041 3.959 3 C -0.217 4.217 4 N -0.306 5.306 5 C -0.374 4.374 6 H 0.107 0.893 7 C -0.170 4.170 8 N -0.530 5.530 9 Si 0.677 3.323 10 H -0.213 1.213 11 H -0.235 1.235 12 H -0.198 1.198 13 C 0.026 3.974 14 C 0.010 3.990 15 H 0.082 0.918 16 C -0.108 4.108 17 N -0.258 5.258 18 C -0.034 4.034 19 C -0.204 4.204 20 C -0.203 4.203 21 C -0.111 4.111 22 C -0.016 4.016 23 O -0.263 6.263 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.821 13.080 11.365 17.744 hybrid contribution -0.959 -0.617 0.104 1.145 sum -4.780 12.463 11.469 17.599 Atomic orbital electron populations 1.22481 0.98847 1.01701 1.00402 1.20754 0.91310 0.92218 0.91663 1.22373 1.01792 0.98003 0.99509 1.44111 1.52412 1.35129 0.98939 1.18892 1.10172 1.05756 1.02555 0.89333 1.25180 0.96125 0.98979 0.96756 1.70095 1.23635 1.37655 1.21590 0.87547 0.88215 0.76607 0.79954 1.21307 1.23463 1.19837 1.20787 0.93170 0.95385 0.88040 1.23328 0.84640 0.98254 0.92776 0.91826 1.22911 0.96346 0.93694 0.97836 1.62291 1.02358 1.37120 1.23995 1.21619 0.95472 0.96612 0.89682 1.21903 0.98657 0.99338 1.00485 1.21875 0.95744 1.01061 1.01621 1.22870 0.91132 0.98060 0.99070 1.22541 0.93245 0.93923 0.91890 1.88312 1.17263 1.37226 1.83515 0.93065 0.93424 0.92559 0.89996 0.92451 0.94216 0.93515 0.93126 0.92383 0.92719 0.94401 0.90083 0.94529 0.92444 0.92532 0.91779 0.92411 0.92480 0.91786 0.90086 0.94435 0.93234 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.34 8.43 37.16 0.31 -3.03 16 2 C 0.15 3.23 2.20 -67.93 -0.15 3.08 16 3 C -0.16 -3.00 8.48 37.16 0.32 -2.68 16 4 N -0.59 -13.83 2.14 -165.66 -0.35 -14.18 16 5 C -0.25 -6.92 9.36 -15.06 -0.14 -7.06 16 6 H 0.09 2.73 7.68 -52.49 -0.40 2.33 16 7 C 0.03 0.83 4.95 -17.43 -0.09 0.75 16 8 N -0.89 -27.50 13.97 55.49 0.78 -26.73 16 9 Si 0.85 22.03 23.79 -169.99 -4.04 17.98 16 10 H -0.29 -7.16 6.40 56.52 0.36 -6.80 16 11 H -0.31 -8.20 7.11 56.52 0.40 -7.79 16 12 H -0.27 -6.95 6.20 56.52 0.35 -6.60 16 13 C 0.15 3.04 4.98 -4.04 -0.02 3.02 16 14 C 0.07 1.28 2.82 -26.68 -0.08 1.20 16 15 H 0.06 1.19 5.42 -51.93 -0.28 0.90 16 16 C 0.02 0.30 4.62 -3.71 -0.02 0.29 16 17 N -0.53 -7.19 4.60 -226.33 -1.04 -8.23 16 18 C 0.07 0.82 2.67 -67.71 -0.18 0.64 16 19 C -0.15 -1.37 8.85 37.16 0.33 -1.04 16 20 C -0.15 -1.42 8.97 37.16 0.33 -1.09 16 21 C 0.02 0.23 5.25 -3.72 -0.02 0.21 16 22 C 0.06 1.00 7.01 37.20 0.26 1.26 16 23 O -0.35 -7.05 9.47 -35.23 -0.33 -7.38 16 24 H 0.05 0.86 6.51 -51.93 -0.34 0.52 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.16 5.39 -51.93 -0.28 0.88 16 27 H 0.08 2.05 4.02 -51.93 -0.21 1.84 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.81 5.99 -51.93 -0.31 0.50 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.06 1.19 8.04 -51.93 -0.42 0.78 16 33 H 0.05 0.95 6.15 -51.93 -0.32 0.63 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.07 6.18 -51.93 -0.32 0.75 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.52 6.30 -51.93 -0.33 0.19 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.58 6.35 -51.93 -0.33 0.25 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.93 6.11 -51.93 -0.32 0.62 16 44 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -30.97 332.39 -7.28 -38.25 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.15 Total: -0.25 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 0.86 Total: -4.46 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.62 Total: -49.15 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.33 Total: -7.38 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.04 Total: 17.98 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.97 -7.28 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080746478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.829 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds