Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 C 1.52996 * 109.47191 * 120.00414 * 2 1 3 5 5 C 1.53009 * 109.47150 * 64.99896 * 4 2 1 6 6 O 1.42894 * 109.46851 * 180.02562 * 5 4 2 7 7 C 1.42902 * 113.99659 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47155 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.46843 * 62.00699 * 8 7 6 10 10 C 1.46906 * 110.99619 * 176.14630 * 9 8 7 11 11 C 1.53238 * 109.33748 * 172.74574 * 10 9 8 12 12 N 1.47076 * 108.52229 * 53.83003 * 11 10 9 13 13 C 1.36936 * 120.88462 * 128.78973 * 12 11 10 14 14 H 1.07995 * 120.00979 * 208.03714 * 13 12 11 15 15 C 1.38817 * 119.99548 * 28.03833 * 13 12 11 16 16 N 1.31624 * 120.00310 * 15.40984 * 15 13 12 17 17 Si 1.86798 * 119.99975 * 195.40796 * 15 13 12 18 18 H 1.48496 * 109.47490 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47421 * 120.00065 * 17 15 13 20 20 H 1.48507 * 109.47209 * 240.00103 * 17 15 13 21 21 C 1.47083 * 118.23804 * 308.81632 * 12 11 10 22 22 C 1.46896 * 111.00174 * 51.84855 * 9 8 7 23 23 H 1.09005 * 109.47265 * 59.99454 * 1 2 3 24 24 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47419 * 299.99958 * 1 2 3 26 26 H 1.09003 * 109.47055 * 240.00441 * 2 1 3 27 27 H 1.09002 * 109.46957 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47479 * 300.00266 * 3 2 1 29 29 H 1.09003 * 109.46728 * 60.00240 * 3 2 1 30 30 H 1.08996 * 109.47456 * 305.00343 * 4 2 1 31 31 H 1.08999 * 109.47514 * 184.99562 * 4 2 1 32 32 H 1.09000 * 109.47047 * 59.99771 * 5 4 2 33 33 H 1.08999 * 109.46639 * 300.00201 * 5 4 2 34 34 H 1.09002 * 109.47691 * 59.99826 * 7 6 5 35 35 H 1.08996 * 109.47142 * 299.99499 * 7 6 5 36 36 H 1.09000 * 109.46959 * 302.00488 * 8 7 6 37 37 H 1.09006 * 109.47254 * 182.00650 * 8 7 6 38 38 H 1.09001 * 109.48933 * 52.78995 * 10 9 8 39 39 H 1.08992 * 109.49563 * 292.70322 * 10 9 8 40 40 H 1.08996 * 109.62977 * 173.53848 * 11 10 9 41 41 H 1.09002 * 109.63213 * 293.92544 * 11 10 9 42 42 H 0.96996 * 120.00061 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.62634 * 170.89305 * 21 12 11 44 44 H 1.09001 * 109.62726 * 291.46896 * 21 12 11 45 45 H 1.08996 * 109.49711 * 67.29183 * 22 9 8 46 46 H 1.09004 * 109.51506 * 307.22240 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 -2.1956 1.1878 6 8 2.1110 -2.8691 2.3548 7 6 1.7850 -4.2598 2.3967 8 6 2.3415 -4.8756 3.6820 9 7 1.7153 -4.2317 4.8444 10 6 2.1579 -4.8603 6.0963 11 6 1.6293 -4.0508 7.2852 12 7 0.1725 -3.9078 7.1422 13 6 -0.6698 -4.2280 8.1733 14 1 -1.6769 -4.5580 7.9655 15 6 -0.2291 -4.1284 9.4859 16 7 0.8655 -3.4520 9.7631 17 14 -1.1894 -4.9544 10.8588 18 1 -2.3724 -5.6471 10.2881 19 1 -0.3204 -5.9439 11.5450 20 1 -1.6387 -3.9292 11.8348 21 6 -0.3558 -3.4122 5.8621 22 6 0.2510 -4.2469 4.7293 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6054 -0.2620 2.1369 31 1 3.1263 -0.6445 1.2951 32 1 2.0697 -2.6550 0.3000 33 1 0.5489 -2.2724 1.1419 34 1 2.2234 -4.7620 1.5343 35 1 0.7019 -4.3799 2.3753 36 1 3.4203 -4.7241 3.7200 37 1 2.1239 -5.9436 3.6972 38 1 3.2473 -4.8823 6.1269 39 1 1.7715 -5.8780 6.1487 40 1 1.8564 -4.5736 8.2141 41 1 2.0974 -3.0665 7.2951 42 1 1.1732 -3.3821 10.6803 43 1 -1.4411 -3.5130 5.8503 44 1 -0.0811 -2.3653 5.7333 45 1 -0.1089 -5.2732 4.8007 46 1 -0.0431 -3.8244 3.7685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109444500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -50.007095 kcal Electronic energy + Delta-G solvation = -21585.903884 eV Core-core repulsion = 18510.127439 eV Total energy + Delta-G solvation = -3075.776445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.03798 -38.86990 -37.14800 -36.02435 -33.39548 -31.89805 -30.93750 -29.56625 -28.01308 -27.51571 -25.11136 -24.17043 -23.93350 -22.44838 -20.86028 -20.69930 -18.77085 -17.53993 -17.38998 -16.86286 -16.32703 -16.07986 -15.62148 -15.44911 -15.28319 -15.16930 -14.82828 -14.64148 -14.41210 -14.09310 -13.50619 -13.23715 -13.04708 -13.02071 -12.79861 -12.65736 -12.63977 -12.35167 -12.27800 -12.11300 -12.01191 -11.85923 -11.62238 -11.53256 -11.47702 -11.42089 -11.29248 -10.60946 -10.36482 -9.16920 -8.66372 -7.87579 -5.35000 1.45993 1.46735 1.58289 2.50131 2.76805 3.05822 3.27954 3.67619 3.93689 3.95928 4.05819 4.17669 4.18970 4.31233 4.34205 4.37660 4.47600 4.53022 4.54815 4.59695 4.67024 4.71301 4.72545 4.81543 4.84474 4.87406 4.94711 4.98897 5.04389 5.06096 5.13747 5.15337 5.19982 5.33243 5.35727 5.46583 5.53075 5.60434 5.67709 6.22592 6.27005 6.38050 6.49556 7.12687 7.82485 8.38677 9.19371 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.003624 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.976744 B = 7725.440118 C = 8198.269980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.112 4.112 5 C 0.058 3.942 6 O -0.397 6.397 7 C 0.066 3.934 8 C 0.055 3.945 9 N -0.538 5.538 10 C 0.051 3.949 11 C 0.188 3.812 12 N -0.614 5.614 13 C -0.266 4.266 14 H 0.068 0.932 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.972 3.028 18 H -0.266 1.266 19 H -0.288 1.288 20 H -0.291 1.291 21 C 0.146 3.854 22 C 0.057 3.943 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.022 0.978 40 H 0.056 0.944 41 H -0.007 1.007 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.009 0.991 45 H 0.023 0.977 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 1.283 -21.875 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.018 4.018 6 O -0.317 6.317 7 C -0.011 4.011 8 C -0.073 4.073 9 N -0.263 5.263 10 C -0.078 4.078 11 C 0.062 3.938 12 N -0.339 5.339 13 C -0.396 4.396 14 H 0.085 0.915 15 C -0.248 4.248 16 N -0.583 5.583 17 Si 0.800 3.200 18 H -0.190 1.190 19 H -0.215 1.215 20 H -0.218 1.218 21 C 0.020 3.980 22 C -0.072 4.072 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.012 0.988 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.027 0.973 45 H 0.042 0.958 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.400 1.890 -21.580 21.795 hybrid contribution -0.665 -1.048 1.083 1.647 sum 1.734 0.842 -20.497 20.587 Atomic orbital electron populations 1.21932 0.94988 1.02001 1.01984 1.21028 0.96101 0.96478 0.97136 1.21832 1.01148 0.95414 1.02043 1.21557 1.01330 0.93432 0.98636 1.22661 0.98305 0.93190 0.87693 1.88019 1.78645 1.21942 1.43096 1.22639 0.99336 0.82158 0.96951 1.22232 1.00113 0.95808 0.89109 1.61860 1.07388 1.55348 1.01753 1.22572 0.99426 0.95317 0.90512 1.20569 0.82929 0.95393 0.94906 1.44406 1.02487 1.75685 1.11279 1.19581 0.96638 1.37390 0.85958 0.91466 1.25893 0.99392 0.99741 0.99741 1.70204 1.26432 1.43076 1.18566 0.85135 0.78221 0.77692 0.78940 1.19015 1.21494 1.21805 1.21096 0.96531 0.94807 0.85560 1.22472 0.87667 0.98026 0.99078 0.91567 0.92453 0.93412 0.90075 0.92465 0.91477 0.93301 0.92955 0.91763 0.92275 0.93106 0.90761 0.92832 0.90100 0.92708 0.90327 0.95976 0.92525 0.98844 0.94038 0.92256 0.97327 0.95848 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.95 71.98 0.64 -1.65 16 2 C -0.09 -1.38 2.92 -10.80 -0.03 -1.41 16 3 C -0.15 -2.13 9.19 71.98 0.66 -1.47 16 4 C -0.11 -2.31 5.05 30.60 0.15 -2.16 16 5 C 0.06 1.21 5.69 71.99 0.41 1.62 16 6 O -0.40 -11.15 10.24 -148.98 -1.53 -12.68 16 7 C 0.07 1.55 5.55 71.98 0.40 1.95 16 8 C 0.05 1.52 5.52 86.30 0.48 2.00 16 9 N -0.54 -19.88 4.64 -895.25 -4.15 -24.04 16 10 C 0.05 2.09 5.62 86.38 0.49 2.57 16 11 C 0.19 9.80 5.40 86.35 0.47 10.27 16 12 N -0.61 -33.11 3.03 -698.14 -2.12 -35.23 16 13 C -0.27 -15.25 9.62 84.03 0.81 -14.44 16 14 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 15 C -0.05 -3.03 4.96 84.86 0.42 -2.61 16 16 N -0.94 -57.37 11.16 21.65 0.24 -57.13 16 17 Si 0.97 45.89 29.58 68.60 2.03 47.91 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 C 0.15 6.60 6.69 86.35 0.58 7.18 16 22 C 0.06 2.08 5.22 86.38 0.45 2.53 16 23 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.02 6.57 -2.39 -0.02 1.00 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.22 6.04 -2.39 -0.01 1.21 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 37 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 3.25 6.18 -2.39 -0.01 3.23 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.06 2.55 7.95 -2.39 -0.02 2.53 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 2.83 5.72 -2.38 -0.01 2.82 16 Total: -1.00 -67.65 353.96 1.30 -66.34 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.90 Total: 10.43 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.93 Total: 4.38 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -6.03 Total: -116.39 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.53 Total: -12.68 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -67.65 1.30 -66.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.336 kcal (2) G-P(sol) polarization free energy of solvation -67.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds