Wall clock time and date at job start Mon Mar 30 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47054 * 2 1 4 4 H 1.09000 * 109.47026 * 50.55578 * 3 2 1 5 5 C 1.50701 * 109.46990 * 170.55406 * 3 2 1 6 6 H 1.07998 * 120.00005 * 4.19173 * 5 3 2 7 7 C 1.37875 * 120.00063 * 184.18170 * 5 3 2 8 8 N 1.31513 * 120.00468 * 190.89892 * 7 5 3 9 9 Si 1.86803 * 119.99926 * 10.90577 * 7 5 3 10 10 H 1.48505 * 109.47185 * 85.60802 * 9 7 5 11 11 H 1.48500 * 109.47074 * 205.60689 * 9 7 5 12 12 H 1.48501 * 109.47285 * 325.61016 * 9 7 5 13 13 N 1.46902 * 109.47402 * 290.55536 * 3 2 1 14 14 C 1.46900 * 110.99662 * 76.11666 * 13 3 2 15 15 C 1.52995 * 109.47764 * 77.30114 * 14 13 3 16 16 O 1.42898 * 109.47209 * 72.12340 * 15 14 13 17 17 C 1.42904 * 114.00301 * 180.02562 * 16 15 14 18 18 C 1.46899 * 110.99788 * 312.16075 * 13 3 2 19 19 C 1.52998 * 109.47221 * 288.90939 * 18 13 3 20 20 H 1.09001 * 109.90381 * 66.98148 * 19 18 13 21 21 C 1.53991 * 109.91495 * 188.08595 * 19 18 13 22 22 C 1.54601 * 105.13708 * 120.58060 * 21 19 18 23 23 C 1.54929 * 102.92385 * 21.95315 * 22 21 19 24 24 N 1.47902 * 109.91431 * 305.67584 * 19 18 13 25 25 H 1.09004 * 109.46769 * 317.75205 * 1 2 3 26 26 H 1.09001 * 109.47542 * 77.74950 * 1 2 3 27 27 H 1.09007 * 109.47340 * 197.75571 * 1 2 3 28 28 H 1.08999 * 109.46627 * 240.00350 * 2 1 3 29 29 H 1.08994 * 109.47271 * 120.00322 * 2 1 3 30 30 H 0.96998 * 120.00589 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46692 * 197.29911 * 14 13 3 32 32 H 1.09008 * 109.47239 * 317.29434 * 14 13 3 33 33 H 1.08997 * 109.47678 * 192.12939 * 15 14 13 34 34 H 1.09004 * 109.46821 * 312.12791 * 15 14 13 35 35 H 1.08996 * 109.47519 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.46667 * 300.00428 * 17 16 15 37 37 H 1.08999 * 109.46920 * 59.99664 * 17 16 15 38 38 H 1.09000 * 109.46953 * 168.90909 * 18 13 3 39 39 H 1.08995 * 109.47103 * 48.91072 * 18 13 3 40 40 H 1.09001 * 110.31045 * 239.49081 * 21 19 18 41 41 H 1.08993 * 110.31186 * 1.56423 * 21 19 18 42 42 H 1.09004 * 110.72428 * 140.31579 * 22 21 19 43 43 H 1.09004 * 110.72107 * 263.41995 * 22 21 19 44 44 H 1.08998 * 110.67014 * 81.02270 * 23 22 21 45 45 H 1.09004 * 110.67020 * 203.98665 * 23 22 21 46 46 H 1.00897 * 111.00248 * 335.83169 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5455 2.0026 0.7936 5 6 3.5288 1.4489 0.2332 6 1 4.0689 0.5160 0.3003 7 6 4.2015 2.6456 0.3606 8 7 5.5165 2.6654 0.3488 9 14 3.2452 4.2390 0.5502 10 1 2.9146 4.4505 1.9824 11 1 4.0698 5.3726 0.0599 12 1 1.9909 4.1607 -0.2409 13 7 1.7448 2.0663 -1.2968 14 6 0.3239 2.4257 -1.3967 15 6 0.0630 3.7023 -0.5949 16 8 0.6327 4.8197 -1.2797 17 6 0.4448 6.0686 -0.6112 18 6 2.1456 1.1902 -2.4058 19 6 3.6724 1.1402 -2.4901 20 1 4.0763 0.6383 -1.6109 21 6 4.1031 0.3924 -3.7654 22 6 4.9454 1.4119 -4.5663 23 6 5.4013 2.4157 -3.4777 24 7 4.2168 2.5120 -2.5867 25 1 -0.3633 0.7608 0.6910 26 1 -0.3634 0.2181 -1.0042 27 1 -0.3634 -0.9788 0.3134 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.9898 3.5073 0.4388 31 1 0.0643 2.5937 -2.4420 32 1 -0.2850 1.6147 -0.9970 33 1 -1.0114 3.8510 -0.4879 34 1 0.5172 3.6108 0.3918 35 1 0.9052 6.8659 -1.1945 36 1 -0.6218 6.2665 -0.5042 37 1 0.9071 6.0260 0.3750 38 1 1.7426 1.5800 -3.3406 39 1 1.7581 0.1861 -2.2338 40 1 4.7069 -0.4778 -3.5081 41 1 3.2279 0.0885 -4.3396 42 1 5.8052 0.9250 -5.0265 43 1 4.3352 1.9081 -5.3210 44 1 6.2620 2.0279 -2.9329 45 1 5.6326 3.3846 -3.9204 46 1 3.5305 3.1476 -2.9648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300140823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:28 Heat of formation + Delta-G solvation = 16.411021 kcal Electronic energy + Delta-G solvation = -23933.655491 eV Core-core repulsion = 20860.759151 eV Total energy + Delta-G solvation = -3072.896339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.99148 -37.52069 -36.46704 -32.10153 -31.53169 -30.36868 -28.94643 -28.23413 -27.06758 -25.63164 -23.30498 -22.90705 -21.18327 -20.63267 -19.30522 -18.62758 -16.83967 -16.29257 -15.76337 -15.34862 -15.14646 -14.62375 -14.33063 -14.01509 -13.63973 -13.10574 -12.94365 -12.79913 -12.21699 -12.07800 -11.90701 -11.62745 -11.47165 -11.26475 -11.11788 -10.96729 -10.74885 -10.68064 -10.62884 -10.44736 -10.20157 -9.85459 -9.68816 -9.51752 -9.43161 -9.22038 -8.96040 -8.59963 -7.83447 -7.12658 -6.75499 -5.62058 -3.62169 3.71217 3.86434 4.02234 4.41419 4.84575 5.09019 5.30266 5.45680 5.50796 5.52741 5.60558 5.66800 5.70350 5.74959 5.81591 5.85486 5.91687 5.94042 5.97462 5.99066 6.11789 6.17579 6.18743 6.29646 6.31664 6.35391 6.41812 6.45713 6.50708 6.58300 6.62882 6.70285 6.81525 6.92720 7.01053 7.29173 7.65437 7.70103 7.94291 8.09224 8.33254 8.53828 8.70690 8.87074 9.28155 10.08048 11.46976 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.010044 C = 0.008922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.791489 B = 2787.138931 C = 3137.500780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.151 4.151 3 C 0.187 3.813 4 H 0.031 0.969 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.138 3.862 8 N -0.881 5.881 9 Si 0.798 3.202 10 H -0.316 1.316 11 H -0.308 1.308 12 H -0.142 1.142 13 N -0.505 5.505 14 C 0.016 3.984 15 C 0.069 3.931 16 O -0.364 6.364 17 C 0.028 3.972 18 C 0.063 3.937 19 C 0.089 3.911 20 H 0.126 0.874 21 C -0.154 4.154 22 C -0.157 4.157 23 C 0.047 3.953 24 N -0.610 5.610 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.254 0.746 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.032 0.968 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -0.468 -6.096 11.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.190 4.190 3 C 0.082 3.918 4 H 0.048 0.952 5 C -0.559 4.559 6 H 0.080 0.920 7 C -0.069 4.069 8 N -0.516 5.516 9 Si 0.628 3.372 10 H -0.245 1.245 11 H -0.236 1.236 12 H -0.065 1.065 13 N -0.229 5.229 14 C -0.112 4.112 15 C -0.007 4.007 16 O -0.283 6.283 17 C -0.069 4.069 18 C -0.066 4.066 19 C -0.021 4.021 20 H 0.143 0.857 21 C -0.194 4.194 22 C -0.197 4.197 23 C -0.084 4.084 24 N -0.235 5.235 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.586 0.073 -5.644 10.275 hybrid contribution -1.128 0.197 -0.523 1.259 sum -9.713 0.270 -6.167 11.509 Atomic orbital electron populations 1.22203 0.98575 1.00107 1.00539 1.22211 0.92985 1.01995 1.01765 1.19729 0.97772 0.87612 0.86693 0.95171 1.20373 0.89438 0.93723 1.52337 0.92030 1.24398 0.93712 0.98143 0.90621 1.69911 1.07547 1.26218 1.47969 0.88402 0.88196 0.83672 0.76897 1.24549 1.23568 1.06462 1.63015 1.12946 1.43280 1.03687 1.22835 0.93564 0.95199 0.99636 1.22526 0.94167 0.86873 0.97179 1.88150 1.77743 1.14249 1.48126 1.22597 0.99010 0.87410 0.97921 1.22289 0.96243 0.95000 0.93049 1.22696 0.92756 0.90009 0.96678 0.85698 1.23039 0.98763 0.98975 0.98639 1.23134 0.99168 0.98650 0.98748 1.23062 0.97170 0.96635 0.91490 1.62605 1.06815 1.07082 1.47046 0.93117 0.92611 0.94275 0.91935 0.92343 0.93716 0.92245 0.91168 0.95012 0.92702 0.90296 0.95028 0.94632 0.94112 0.95019 0.92395 0.93141 0.92538 0.92891 0.90640 0.92822 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 8.26 37.16 0.31 -2.07 16 2 C -0.15 -2.79 4.94 -26.73 -0.13 -2.92 16 3 C 0.19 3.98 1.16 -68.87 -0.08 3.90 16 4 H 0.03 0.68 5.35 -51.93 -0.28 0.41 16 5 C -0.52 -13.53 5.77 -34.44 -0.20 -13.72 16 6 H 0.06 1.78 7.47 -52.49 -0.39 1.39 16 7 C 0.14 3.81 4.07 -17.82 -0.07 3.74 16 8 N -0.88 -26.23 13.96 55.43 0.77 -25.45 16 9 Si 0.80 20.25 24.11 -169.99 -4.10 16.15 16 10 H -0.32 -8.45 7.11 56.52 0.40 -8.04 16 11 H -0.31 -8.50 7.11 56.52 0.40 -8.10 16 12 H -0.14 -3.11 0.60 56.52 0.03 -3.07 16 13 N -0.50 -9.78 2.51 -228.04 -0.57 -10.35 16 14 C 0.02 0.26 5.05 -3.83 -0.02 0.24 16 15 C 0.07 1.17 5.16 37.15 0.19 1.36 16 16 O -0.36 -6.59 8.92 -35.23 -0.31 -6.91 16 17 C 0.03 0.42 10.34 101.05 1.04 1.46 16 18 C 0.06 1.14 3.70 -3.83 -0.01 1.13 16 19 C 0.09 1.77 2.64 -66.64 -0.18 1.59 16 20 H 0.13 3.02 5.16 -51.93 -0.27 2.76 16 21 C -0.15 -2.62 6.57 -25.37 -0.17 -2.78 16 22 C -0.16 -2.53 7.06 -24.87 -0.18 -2.70 16 23 C 0.05 0.89 7.55 -1.90 -0.01 0.87 16 24 N -0.61 -12.92 5.68 -103.13 -0.59 -13.51 16 25 H 0.05 0.76 7.56 -51.93 -0.39 0.36 16 26 H 0.06 0.80 6.00 -51.93 -0.31 0.48 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.17 5.50 -51.93 -0.29 0.88 16 29 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 30 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.06 0.96 7.63 -51.93 -0.40 0.57 16 32 H 0.07 1.08 3.00 -51.92 -0.16 0.92 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 1.02 4.85 -51.93 -0.25 0.77 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.57 6.75 -51.93 -0.35 0.22 16 38 H 0.04 0.71 7.67 -51.93 -0.40 0.31 16 39 H 0.03 0.57 5.31 -51.93 -0.28 0.29 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.78 7.68 -51.93 -0.40 0.38 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.32 6.77 8.34 -39.29 -0.33 6.44 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -28.80 320.24 -7.69 -36.49 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.21 Total: 8.65 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 0.49 Total: -9.90 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.39 Total: -49.31 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.31 Total: -6.91 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.10 Total: 16.15 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.80 -7.69 -36.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300140823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.903 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds