Wall clock time and date at job start Mon Mar 30 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47054 * 2 1 4 4 H 1.09000 * 109.47026 * 50.55578 * 3 2 1 5 5 C 1.50701 * 109.46990 * 170.55406 * 3 2 1 6 6 H 1.07998 * 120.00005 * 4.19173 * 5 3 2 7 7 C 1.37875 * 120.00063 * 184.18170 * 5 3 2 8 8 N 1.31513 * 120.00468 * 190.89892 * 7 5 3 9 9 Si 1.86803 * 119.99926 * 10.90577 * 7 5 3 10 10 H 1.48505 * 109.47185 * 85.60802 * 9 7 5 11 11 H 1.48500 * 109.47074 * 205.60689 * 9 7 5 12 12 H 1.48501 * 109.47285 * 325.61016 * 9 7 5 13 13 N 1.46902 * 109.47402 * 290.55536 * 3 2 1 14 14 C 1.46900 * 110.99662 * 76.11666 * 13 3 2 15 15 C 1.52995 * 109.47764 * 77.30114 * 14 13 3 16 16 O 1.42898 * 109.47209 * 72.12340 * 15 14 13 17 17 C 1.42904 * 114.00301 * 180.02562 * 16 15 14 18 18 C 1.46899 * 110.99788 * 312.16075 * 13 3 2 19 19 C 1.52998 * 109.47221 * 288.90939 * 18 13 3 20 20 H 1.09001 * 109.90381 * 66.98148 * 19 18 13 21 21 C 1.53991 * 109.91495 * 188.08595 * 19 18 13 22 22 C 1.54601 * 105.13708 * 120.58060 * 21 19 18 23 23 C 1.54929 * 102.92385 * 21.95315 * 22 21 19 24 24 N 1.47902 * 109.91431 * 305.67584 * 19 18 13 25 25 H 1.09004 * 109.46769 * 317.75205 * 1 2 3 26 26 H 1.09001 * 109.47542 * 77.74950 * 1 2 3 27 27 H 1.09007 * 109.47340 * 197.75571 * 1 2 3 28 28 H 1.08999 * 109.46627 * 240.00350 * 2 1 3 29 29 H 1.08994 * 109.47271 * 120.00322 * 2 1 3 30 30 H 0.96998 * 120.00589 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46692 * 197.29911 * 14 13 3 32 32 H 1.09008 * 109.47239 * 317.29434 * 14 13 3 33 33 H 1.08997 * 109.47678 * 192.12939 * 15 14 13 34 34 H 1.09004 * 109.46821 * 312.12791 * 15 14 13 35 35 H 1.08996 * 109.47519 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.46667 * 300.00428 * 17 16 15 37 37 H 1.08999 * 109.46920 * 59.99664 * 17 16 15 38 38 H 1.09000 * 109.46953 * 168.90909 * 18 13 3 39 39 H 1.08995 * 109.47103 * 48.91072 * 18 13 3 40 40 H 1.09001 * 110.31045 * 239.49081 * 21 19 18 41 41 H 1.08993 * 110.31186 * 1.56423 * 21 19 18 42 42 H 1.09004 * 110.72428 * 140.31579 * 22 21 19 43 43 H 1.09004 * 110.72107 * 263.41995 * 22 21 19 44 44 H 1.08998 * 110.67014 * 81.02270 * 23 22 21 45 45 H 1.09004 * 110.67020 * 203.98665 * 23 22 21 46 46 H 1.00897 * 111.00248 * 335.83169 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5455 2.0026 0.7936 5 6 3.5288 1.4489 0.2332 6 1 4.0689 0.5160 0.3003 7 6 4.2015 2.6456 0.3606 8 7 5.5165 2.6654 0.3488 9 14 3.2452 4.2390 0.5502 10 1 2.9146 4.4505 1.9824 11 1 4.0698 5.3726 0.0599 12 1 1.9909 4.1607 -0.2409 13 7 1.7448 2.0663 -1.2968 14 6 0.3239 2.4257 -1.3967 15 6 0.0630 3.7023 -0.5949 16 8 0.6327 4.8197 -1.2797 17 6 0.4448 6.0686 -0.6112 18 6 2.1456 1.1902 -2.4058 19 6 3.6724 1.1402 -2.4901 20 1 4.0763 0.6383 -1.6109 21 6 4.1031 0.3924 -3.7654 22 6 4.9454 1.4119 -4.5663 23 6 5.4013 2.4157 -3.4777 24 7 4.2168 2.5120 -2.5867 25 1 -0.3633 0.7608 0.6910 26 1 -0.3634 0.2181 -1.0042 27 1 -0.3634 -0.9788 0.3134 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.9898 3.5073 0.4388 31 1 0.0643 2.5937 -2.4420 32 1 -0.2850 1.6147 -0.9970 33 1 -1.0114 3.8510 -0.4879 34 1 0.5172 3.6108 0.3918 35 1 0.9052 6.8659 -1.1945 36 1 -0.6218 6.2665 -0.5042 37 1 0.9071 6.0260 0.3750 38 1 1.7426 1.5800 -3.3406 39 1 1.7581 0.1861 -2.2338 40 1 4.7069 -0.4778 -3.5081 41 1 3.2279 0.0885 -4.3396 42 1 5.8052 0.9250 -5.0265 43 1 4.3352 1.9081 -5.3210 44 1 6.2620 2.0279 -2.9329 45 1 5.6326 3.3846 -3.9204 46 1 3.5305 3.1476 -2.9648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300140823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:27 Heat of formation + Delta-G solvation = -4.854599 kcal Electronic energy + Delta-G solvation = -23934.577637 eV Core-core repulsion = 20860.759151 eV Total energy + Delta-G solvation = -3073.818486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51319 -38.91997 -37.93064 -34.14136 -33.00267 -31.79979 -30.44951 -29.83882 -28.62044 -26.92296 -24.81352 -24.61761 -22.56586 -22.14177 -20.83553 -20.22288 -18.67597 -17.81351 -17.22515 -16.75931 -16.62704 -16.20757 -15.77450 -15.70751 -15.11378 -14.73970 -14.42317 -14.23631 -13.96878 -13.58409 -13.34280 -13.07758 -12.97200 -12.76330 -12.58414 -12.53907 -12.34795 -12.11243 -12.02176 -11.98013 -11.74558 -11.51594 -11.23252 -11.19173 -10.99066 -10.85700 -10.76543 -10.32668 -9.89798 -8.70618 -8.28797 -7.81736 -5.79364 1.57150 1.71784 2.02243 2.87991 3.17499 3.31401 3.70636 3.89999 4.10794 4.11988 4.30447 4.33937 4.37426 4.43063 4.49085 4.52611 4.58131 4.60008 4.65956 4.67669 4.79794 4.82072 4.84043 4.87978 4.91387 4.95043 5.07041 5.09951 5.12406 5.20970 5.22999 5.25273 5.36594 5.42869 5.51981 5.72056 5.95647 6.02070 6.38952 6.41346 6.61921 6.82674 6.96818 7.13439 7.19981 7.91478 9.29464 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.010044 C = 0.008922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.791489 B = 2787.138931 C = 3137.500780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.194 3.806 4 H 0.024 0.976 5 C -0.499 4.499 6 H 0.018 0.982 7 C 0.098 3.902 8 N -0.927 5.927 9 Si 0.820 3.180 10 H -0.335 1.335 11 H -0.340 1.340 12 H -0.076 1.076 13 N -0.521 5.521 14 C 0.016 3.984 15 C 0.061 3.939 16 O -0.387 6.387 17 C 0.020 3.980 18 C 0.069 3.931 19 C 0.090 3.910 20 H 0.073 0.927 21 C -0.147 4.147 22 C -0.141 4.141 23 C 0.045 3.955 24 N -0.637 5.637 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.241 0.759 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.020 0.980 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.064 0.936 46 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 -0.640 -8.331 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.088 3.912 4 H 0.042 0.958 5 C -0.537 4.537 6 H 0.037 0.963 7 C -0.103 4.103 8 N -0.566 5.566 9 Si 0.654 3.346 10 H -0.266 1.266 11 H -0.270 1.270 12 H 0.002 0.998 13 N -0.246 5.246 14 C -0.111 4.111 15 C -0.015 4.015 16 O -0.307 6.307 17 C -0.077 4.077 18 C -0.059 4.059 19 C -0.021 4.021 20 H 0.090 0.910 21 C -0.187 4.187 22 C -0.181 4.181 23 C -0.085 4.085 24 N -0.263 5.263 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.521 -0.118 -7.887 14.799 hybrid contribution 0.108 0.192 0.211 0.306 sum -12.413 0.075 -7.675 14.595 Atomic orbital electron populations 1.22092 0.95018 1.01606 1.01807 1.22084 0.96048 0.99526 1.00910 1.19463 0.94257 0.89760 0.87764 0.95785 1.20542 0.91965 0.91318 1.49835 0.96348 1.24888 0.93845 1.00387 0.91222 1.70073 1.09157 1.25655 1.51685 0.88296 0.89846 0.80086 0.76374 1.26636 1.27017 0.99823 1.62591 1.15686 1.43528 1.02760 1.22957 0.91416 0.95785 1.00969 1.22681 0.96377 0.86718 0.95715 1.88084 1.78369 1.15421 1.48803 1.22802 1.01242 0.86556 0.97052 1.22247 0.94742 0.95488 0.93418 1.22380 0.94056 0.89365 0.96250 0.90953 1.22929 0.99808 0.98519 0.97459 1.23010 0.99753 0.97428 0.97875 1.22964 0.95473 0.98082 0.92008 1.62448 1.07447 1.07913 1.48515 0.92630 0.90862 0.92335 0.92114 0.94125 0.95019 0.90535 0.88994 0.91166 0.94909 0.89255 0.91753 0.96103 0.91802 0.93944 0.93102 0.90502 0.91069 0.90727 0.94077 0.91725 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.26 71.98 0.59 -3.28 16 2 C -0.15 -5.21 4.94 30.59 0.15 -5.06 16 3 C 0.19 8.13 1.16 44.17 0.05 8.18 16 4 H 0.02 1.06 5.35 -2.39 -0.01 1.05 16 5 C -0.50 -26.95 5.77 25.60 0.15 -26.80 16 6 H 0.02 1.14 7.47 -2.91 -0.02 1.12 16 7 C 0.10 5.67 4.07 84.65 0.34 6.01 16 8 N -0.93 -58.84 13.96 21.45 0.30 -58.54 16 9 Si 0.82 42.54 24.11 68.60 1.65 44.20 16 10 H -0.34 -18.35 7.11 99.48 0.71 -17.64 16 11 H -0.34 -19.48 7.11 99.48 0.71 -18.78 16 12 H -0.08 -3.24 0.60 99.48 0.06 -3.18 16 13 N -0.52 -19.02 2.51 -875.39 -2.20 -21.22 16 14 C 0.02 0.46 5.05 86.30 0.44 0.90 16 15 C 0.06 1.81 5.16 71.98 0.37 2.19 16 16 O -0.39 -12.64 8.92 -148.98 -1.33 -13.97 16 17 C 0.02 0.54 10.34 113.37 1.17 1.71 16 18 C 0.07 2.34 3.70 86.30 0.32 2.66 16 19 C 0.09 3.55 2.64 45.06 0.12 3.67 16 20 H 0.07 3.66 5.16 -2.39 -0.01 3.65 16 21 C -0.15 -4.73 6.57 31.47 0.21 -4.52 16 22 C -0.14 -4.23 7.06 31.80 0.22 -4.01 16 23 C 0.04 1.72 7.55 86.65 0.65 2.37 16 24 N -0.64 -27.16 5.68 -480.21 -2.73 -29.89 16 25 H 0.05 1.42 7.56 -2.38 -0.02 1.40 16 26 H 0.07 1.68 6.00 -2.39 -0.01 1.67 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.06 2.17 5.50 -2.39 -0.01 2.16 16 29 H 0.04 1.56 8.11 -2.39 -0.02 1.54 16 30 H 0.24 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.08 2.04 7.63 -2.39 -0.02 2.02 16 32 H 0.09 2.31 3.00 -2.38 -0.01 2.30 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.03 1.12 4.85 -2.38 -0.01 1.11 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.02 0.62 6.75 -2.39 -0.02 0.60 16 38 H 0.06 1.92 7.67 -2.39 -0.02 1.90 16 39 H 0.04 1.37 5.31 -2.39 -0.01 1.36 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 2.08 7.68 -2.39 -0.02 2.06 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.32 13.27 8.34 -89.70 -0.75 12.52 16 Total: -1.00 -68.04 320.24 0.06 -67.98 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -0.43 Total: 27.42 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 4.79 Total: -15.98 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.63 Total: -109.65 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.33 Total: -13.97 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.65 Total: 44.20 kcal Total: -68.04 0.06 -67.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300140823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.125 kcal (2) G-P(sol) polarization free energy of solvation -68.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds