Wall clock time and date at job start Mon Mar 30 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47388 * 2 1 4 4 H 1.09005 * 109.46577 * 55.43399 * 3 2 1 5 5 C 1.50693 * 109.47253 * 175.43383 * 3 2 1 6 6 H 1.08006 * 120.00167 * 120.00239 * 5 3 2 7 7 C 1.37877 * 120.00274 * 300.00401 * 5 3 2 8 8 N 1.31521 * 119.99839 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00198 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47103 * 60.00245 * 9 7 5 11 11 H 1.48501 * 109.47237 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47021 * 299.99658 * 9 7 5 13 13 N 1.46893 * 109.47060 * 295.43828 * 3 2 1 14 14 C 1.46903 * 111.00068 * 144.92235 * 13 3 2 15 15 C 1.53009 * 109.46719 * 55.41211 * 14 13 3 16 16 C 1.52994 * 109.47200 * 295.41359 * 14 13 3 17 17 C 1.52999 * 109.47154 * 175.41066 * 14 13 3 18 18 N 1.46894 * 109.46988 * 56.51846 * 17 14 13 19 19 C 1.47016 * 111.00018 * 210.72106 * 18 17 14 20 20 C 1.53096 * 109.25733 * 177.61136 * 19 18 17 21 21 O 1.43017 * 109.26289 * 56.84831 * 20 19 18 22 22 C 1.43014 * 113.73699 * 301.33107 * 21 20 19 23 23 C 1.47019 * 111.00055 * 87.08963 * 18 17 14 24 24 H 1.08998 * 109.47620 * 305.98846 * 1 2 3 25 25 H 1.09007 * 109.47481 * 65.98390 * 1 2 3 26 26 H 1.09003 * 109.47573 * 185.98051 * 1 2 3 27 27 H 1.09010 * 109.47056 * 240.00374 * 2 1 3 28 28 H 1.08996 * 109.47187 * 120.00562 * 2 1 3 29 29 H 0.97003 * 119.99574 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00683 * 20.96780 * 13 3 2 31 31 H 1.08992 * 109.46780 * 293.53693 * 15 14 13 32 32 H 1.08993 * 109.46930 * 53.54157 * 15 14 13 33 33 H 1.09007 * 109.46583 * 173.53740 * 15 14 13 34 34 H 1.08996 * 109.47267 * 194.26046 * 16 14 13 35 35 H 1.09001 * 109.47137 * 314.26015 * 16 14 13 36 36 H 1.08998 * 109.47424 * 74.25960 * 16 14 13 37 37 H 1.09001 * 109.46825 * 176.52045 * 17 14 13 38 38 H 1.08997 * 109.47174 * 296.51706 * 17 14 13 39 39 H 1.09000 * 109.50720 * 297.54163 * 19 18 17 40 40 H 1.08994 * 109.50374 * 57.67098 * 19 18 17 41 41 H 1.09007 * 109.50467 * 296.91205 * 20 19 18 42 42 H 1.09006 * 109.54019 * 176.80409 * 20 19 18 43 43 H 1.09000 * 109.50584 * 298.73355 * 22 21 20 44 44 H 1.08997 * 109.54287 * 178.62729 * 22 21 20 45 45 H 1.09004 * 109.50212 * 302.32305 * 23 18 17 46 46 H 1.08998 * 109.50708 * 62.41265 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6113 1.9794 0.8463 5 6 3.5427 1.4440 0.1131 6 1 4.1425 1.8906 -0.6662 7 6 4.1519 0.8752 1.2114 8 7 3.4216 0.3318 2.1607 9 14 6.0147 0.8764 1.3513 10 1 6.5102 2.2763 1.3510 11 1 6.4166 0.2099 2.6159 12 1 6.5981 0.1446 0.1984 13 7 1.6424 2.1025 -1.2507 14 6 1.3331 3.5203 -1.0225 15 6 2.5312 4.2033 -0.3597 16 6 0.1110 3.6352 -0.1093 17 6 1.0353 4.1991 -2.3609 18 7 -0.0609 3.4914 -3.0356 19 6 0.0785 3.5747 -4.4968 20 6 -1.0478 2.7760 -5.1579 21 8 -2.3091 3.2755 -4.7051 22 6 -2.4791 3.2088 -3.2867 23 6 -1.3672 4.0120 -2.6066 24 1 -0.3634 0.6038 0.8315 25 1 -0.3634 0.4183 -0.9387 26 1 -0.3634 -1.0221 0.1071 27 1 1.8932 -0.5138 -0.8901 28 1 1.8932 -0.5139 0.8899 29 1 3.8503 -0.0686 2.9332 30 1 0.8623 1.6266 -1.6786 31 1 2.6723 3.7975 0.6420 32 1 3.4267 4.0233 -0.9543 33 1 2.3477 5.2759 -0.2947 34 1 -0.2719 4.6552 -0.1413 35 1 -0.6623 2.9461 -0.4487 36 1 0.3965 3.3862 0.9128 37 1 0.7457 5.2354 -2.1862 38 1 1.9261 4.1717 -2.9884 39 1 0.0174 4.6172 -4.8094 40 1 1.0418 3.1607 -4.7946 41 1 -0.9549 1.7240 -4.8881 42 1 -0.9823 2.8812 -6.2409 43 1 -2.4277 2.1694 -2.9625 44 1 -3.4483 3.6272 -3.0155 45 1 -1.4592 3.9169 -1.5246 46 1 -1.4511 5.0616 -2.8883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308648392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:17 Heat of formation + Delta-G solvation = -37.136561 kcal Electronic energy + Delta-G solvation = -23051.482019 eV Core-core repulsion = 19976.263683 eV Total energy + Delta-G solvation = -3075.218337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.69318 -37.81285 -35.36389 -33.31571 -31.58897 -31.20704 -28.84430 -27.94556 -26.91907 -25.98171 -23.91774 -23.78542 -22.66230 -20.34783 -19.63148 -18.36451 -16.40454 -16.15142 -16.14251 -15.31191 -15.15792 -14.82438 -14.57907 -14.36050 -13.91767 -13.42308 -13.09325 -12.89130 -12.69246 -12.48432 -12.01634 -11.65146 -11.61919 -11.52853 -11.34769 -11.06022 -10.98048 -10.85717 -10.76657 -10.72589 -10.56606 -10.34003 -10.15606 -9.77480 -9.61545 -9.52973 -9.27131 -8.94618 -8.25493 -8.16734 -6.95397 -5.86943 -3.88823 3.38007 3.42496 3.45830 3.79826 3.97861 4.51832 4.91498 5.03351 5.06202 5.16621 5.24017 5.31261 5.41555 5.54021 5.57486 5.62962 5.69619 5.81648 5.83761 5.86363 5.90578 6.02453 6.09485 6.23539 6.24325 6.25126 6.45986 6.50360 6.59736 6.65221 6.91460 6.95917 7.07143 7.11016 7.19339 7.21681 7.28596 7.37951 7.67507 7.89716 8.05338 8.49885 8.62487 9.00105 9.18857 9.74841 11.17968 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.005304 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.502303 B = 5278.097888 C = 5560.058683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.217 3.783 4 H 0.011 0.989 5 C -0.480 4.480 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.669 5.669 14 C 0.128 3.872 15 C -0.129 4.129 16 C -0.178 4.178 17 C 0.071 3.929 18 N -0.525 5.525 19 C 0.021 3.979 20 C 0.064 3.936 21 O -0.391 6.391 22 C 0.064 3.936 23 C 0.002 3.998 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.097 0.903 29 H 0.257 0.743 30 H 0.330 0.670 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.400 6.566 -9.283 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.109 3.891 4 H 0.029 0.971 5 C -0.519 4.519 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.302 5.302 14 C 0.035 3.965 15 C -0.186 4.186 16 C -0.237 4.237 17 C -0.057 4.057 18 N -0.250 5.250 19 C -0.107 4.107 20 C -0.013 4.013 21 O -0.310 6.310 22 C -0.013 4.013 23 C -0.126 4.126 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.833 6.166 -9.305 14.234 hybrid contribution 0.355 0.644 0.634 0.971 sum -8.477 6.810 -8.671 13.908 Atomic orbital electron populations 1.21876 0.99740 0.99352 0.99554 1.21838 0.91128 1.01086 1.02767 1.19181 0.94920 0.89345 0.85630 0.97104 1.21251 0.91438 1.35053 1.04119 0.92243 1.24947 0.97619 0.96061 0.96121 1.69868 1.34558 1.39750 1.09840 0.86702 0.86516 0.77984 0.76969 1.20582 1.21688 1.20518 1.60744 1.41153 0.99728 1.28525 1.20678 0.92851 0.91838 0.91162 1.21821 0.97560 0.96608 1.02656 1.22778 0.99398 0.99842 1.01647 1.22308 0.93060 0.94001 0.96356 1.62044 1.01829 1.56235 1.04920 1.22777 1.00227 0.99000 0.88723 1.22664 0.82544 0.97675 0.98435 1.87934 1.36003 1.84791 1.22224 1.22656 0.97852 1.00171 0.80648 1.23217 0.90097 0.96785 1.02485 0.94098 0.94449 0.94777 0.94425 0.88526 0.93286 0.85080 0.90709 0.92001 0.95151 0.94108 0.92504 0.92229 0.94871 0.90687 0.94714 0.89356 0.92084 0.88921 0.92223 0.88980 0.88136 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.66 37.15 0.36 -2.51 16 2 C -0.13 -3.03 5.28 -26.73 -0.14 -3.17 16 3 C 0.22 5.15 1.30 -68.87 -0.09 5.06 16 4 H 0.01 0.29 5.39 -51.93 -0.28 0.01 16 5 C -0.48 -12.74 7.02 -34.44 -0.24 -12.99 16 6 H 0.06 1.62 7.39 -52.48 -0.39 1.23 16 7 C 0.05 1.41 5.29 -17.82 -0.09 1.32 16 8 N -0.90 -25.33 11.30 55.43 0.63 -24.70 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.67 -13.59 5.92 -94.25 -0.56 -14.14 16 14 C 0.13 2.24 0.75 -131.60 -0.10 2.14 16 15 C -0.13 -2.42 7.31 37.16 0.27 -2.14 16 16 C -0.18 -2.93 6.51 37.15 0.24 -2.68 16 17 C 0.07 1.06 4.42 -3.83 -0.02 1.04 16 18 N -0.53 -7.23 3.76 -234.31 -0.88 -8.11 16 19 C 0.02 0.26 5.52 -3.71 -0.02 0.24 16 20 C 0.06 0.73 7.01 37.21 0.26 0.99 16 21 O -0.39 -5.04 10.83 -35.23 -0.38 -5.42 16 22 C 0.06 0.74 7.01 37.21 0.26 1.00 16 23 C 0.00 0.03 5.10 -3.71 -0.02 0.01 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.67 6.67 -51.93 -0.35 0.32 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.10 2.56 5.96 -51.93 -0.31 2.25 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.33 6.50 5.76 -39.29 -0.23 6.28 16 31 H 0.07 1.63 6.35 -51.93 -0.33 1.30 16 32 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 33 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.04 0.58 7.57 -51.93 -0.39 0.19 16 35 H 0.06 0.91 6.43 -51.93 -0.33 0.58 16 36 H 0.06 1.11 6.60 -51.93 -0.34 0.77 16 37 H 0.03 0.47 7.76 -51.93 -0.40 0.06 16 38 H 0.07 1.16 7.68 -51.93 -0.40 0.76 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 1.06 8.00 -51.93 -0.42 0.65 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.10 1.27 4.21 -51.93 -0.22 1.05 16 46 H 0.03 0.44 8.11 -51.93 -0.42 0.02 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -27.66 337.99 -8.59 -36.25 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.14 Total: 6.34 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 0.67 Total: -11.70 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.81 Total: -46.95 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.38 Total: -5.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.66 -8.59 -36.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308648392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.882 kcal (2) G-P(sol) polarization free energy of solvation -27.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds