Wall clock time and date at job start Mon Mar 30 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47388 * 2 1 4 4 H 1.09005 * 109.46577 * 55.43399 * 3 2 1 5 5 C 1.50693 * 109.47253 * 175.43383 * 3 2 1 6 6 H 1.08006 * 120.00167 * 120.00239 * 5 3 2 7 7 C 1.37877 * 120.00274 * 300.00401 * 5 3 2 8 8 N 1.31521 * 119.99839 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00198 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47103 * 60.00245 * 9 7 5 11 11 H 1.48501 * 109.47237 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47021 * 299.99658 * 9 7 5 13 13 N 1.46893 * 109.47060 * 295.43828 * 3 2 1 14 14 C 1.46903 * 111.00068 * 144.92235 * 13 3 2 15 15 C 1.53009 * 109.46719 * 55.41211 * 14 13 3 16 16 C 1.52994 * 109.47200 * 295.41359 * 14 13 3 17 17 C 1.52999 * 109.47154 * 175.41066 * 14 13 3 18 18 N 1.46894 * 109.46988 * 56.51846 * 17 14 13 19 19 C 1.47016 * 111.00018 * 210.72106 * 18 17 14 20 20 C 1.53096 * 109.25733 * 177.61136 * 19 18 17 21 21 O 1.43017 * 109.26289 * 56.84831 * 20 19 18 22 22 C 1.43014 * 113.73699 * 301.33107 * 21 20 19 23 23 C 1.47019 * 111.00055 * 87.08963 * 18 17 14 24 24 H 1.08998 * 109.47620 * 305.98846 * 1 2 3 25 25 H 1.09007 * 109.47481 * 65.98390 * 1 2 3 26 26 H 1.09003 * 109.47573 * 185.98051 * 1 2 3 27 27 H 1.09010 * 109.47056 * 240.00374 * 2 1 3 28 28 H 1.08996 * 109.47187 * 120.00562 * 2 1 3 29 29 H 0.97003 * 119.99574 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00683 * 20.96780 * 13 3 2 31 31 H 1.08992 * 109.46780 * 293.53693 * 15 14 13 32 32 H 1.08993 * 109.46930 * 53.54157 * 15 14 13 33 33 H 1.09007 * 109.46583 * 173.53740 * 15 14 13 34 34 H 1.08996 * 109.47267 * 194.26046 * 16 14 13 35 35 H 1.09001 * 109.47137 * 314.26015 * 16 14 13 36 36 H 1.08998 * 109.47424 * 74.25960 * 16 14 13 37 37 H 1.09001 * 109.46825 * 176.52045 * 17 14 13 38 38 H 1.08997 * 109.47174 * 296.51706 * 17 14 13 39 39 H 1.09000 * 109.50720 * 297.54163 * 19 18 17 40 40 H 1.08994 * 109.50374 * 57.67098 * 19 18 17 41 41 H 1.09007 * 109.50467 * 296.91205 * 20 19 18 42 42 H 1.09006 * 109.54019 * 176.80409 * 20 19 18 43 43 H 1.09000 * 109.50584 * 298.73355 * 22 21 20 44 44 H 1.08997 * 109.54287 * 178.62729 * 22 21 20 45 45 H 1.09004 * 109.50212 * 302.32305 * 23 18 17 46 46 H 1.08998 * 109.50708 * 62.41265 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6113 1.9794 0.8463 5 6 3.5427 1.4440 0.1131 6 1 4.1425 1.8906 -0.6662 7 6 4.1519 0.8752 1.2114 8 7 3.4216 0.3318 2.1607 9 14 6.0147 0.8764 1.3513 10 1 6.5102 2.2763 1.3510 11 1 6.4166 0.2099 2.6159 12 1 6.5981 0.1446 0.1984 13 7 1.6424 2.1025 -1.2507 14 6 1.3331 3.5203 -1.0225 15 6 2.5312 4.2033 -0.3597 16 6 0.1110 3.6352 -0.1093 17 6 1.0353 4.1991 -2.3609 18 7 -0.0609 3.4914 -3.0356 19 6 0.0785 3.5747 -4.4968 20 6 -1.0478 2.7760 -5.1579 21 8 -2.3091 3.2755 -4.7051 22 6 -2.4791 3.2088 -3.2867 23 6 -1.3672 4.0120 -2.6066 24 1 -0.3634 0.6038 0.8315 25 1 -0.3634 0.4183 -0.9387 26 1 -0.3634 -1.0221 0.1071 27 1 1.8932 -0.5138 -0.8901 28 1 1.8932 -0.5139 0.8899 29 1 3.8503 -0.0686 2.9332 30 1 0.8623 1.6266 -1.6786 31 1 2.6723 3.7975 0.6420 32 1 3.4267 4.0233 -0.9543 33 1 2.3477 5.2759 -0.2947 34 1 -0.2719 4.6552 -0.1413 35 1 -0.6623 2.9461 -0.4487 36 1 0.3965 3.3862 0.9128 37 1 0.7457 5.2354 -2.1862 38 1 1.9261 4.1717 -2.9884 39 1 0.0174 4.6172 -4.8094 40 1 1.0418 3.1607 -4.7946 41 1 -0.9549 1.7240 -4.8881 42 1 -0.9823 2.8812 -6.2409 43 1 -2.4277 2.1694 -2.9625 44 1 -3.4483 3.6272 -3.0155 45 1 -1.4592 3.9169 -1.5246 46 1 -1.4511 5.0616 -2.8883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308648392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:17 Heat of formation + Delta-G solvation = -55.521559 kcal Electronic energy + Delta-G solvation = -23052.279253 eV Core-core repulsion = 19976.263683 eV Total energy + Delta-G solvation = -3076.015570 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77012 -39.19759 -36.72911 -34.88468 -33.50991 -32.14480 -30.43642 -29.09191 -28.57382 -27.64458 -25.16220 -24.74058 -24.46984 -21.40960 -21.30084 -19.89157 -18.21198 -17.43572 -17.12163 -16.66005 -16.50562 -16.12368 -15.81983 -15.73599 -15.32860 -14.83722 -14.67885 -14.32971 -14.17630 -13.81827 -13.32297 -13.26285 -13.02323 -12.83328 -12.81008 -12.70328 -12.53550 -12.40867 -12.25778 -12.21784 -11.85815 -11.77504 -11.65572 -11.44145 -11.29464 -11.14661 -10.85655 -10.46045 -10.30800 -9.25078 -8.65529 -7.94729 -6.03305 1.43903 1.44698 1.51684 2.49999 2.83303 3.04277 3.29512 3.73894 3.98955 4.05889 4.13747 4.21524 4.27097 4.34743 4.40797 4.52074 4.56910 4.63034 4.65535 4.67658 4.77719 4.78565 4.78934 4.87694 4.90536 4.93503 5.05466 5.08512 5.11151 5.17305 5.20204 5.33040 5.46997 5.57759 5.65705 5.75577 5.90005 6.02318 6.11653 6.12327 6.24800 6.52167 6.82810 7.12259 7.29532 7.64689 9.06978 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.005304 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.502303 B = 5278.097888 C = 5560.058683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.228 3.772 4 H -0.014 1.014 5 C -0.486 4.486 6 H 0.047 0.953 7 C 0.007 3.993 8 N -0.924 5.924 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.670 5.670 14 C 0.124 3.876 15 C -0.122 4.122 16 C -0.166 4.166 17 C 0.082 3.918 18 N -0.538 5.538 19 C 0.023 3.977 20 C 0.064 3.936 21 O -0.403 6.403 22 C 0.063 3.937 23 C 0.005 3.995 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.063 0.937 29 H 0.255 0.745 30 H 0.335 0.665 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.422 7.479 -10.680 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.119 3.881 4 H 0.003 0.997 5 C -0.525 4.525 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.565 5.565 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.302 5.302 14 C 0.031 3.969 15 C -0.180 4.180 16 C -0.225 4.225 17 C -0.047 4.047 18 N -0.263 5.263 19 C -0.105 4.105 20 C -0.012 4.012 21 O -0.322 6.322 22 C -0.013 4.013 23 C -0.123 4.123 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.155 0.845 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.073 0.927 44 H 0.131 0.869 45 H 0.117 0.883 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.862 7.088 -10.720 16.199 hybrid contribution 0.662 0.392 1.039 1.293 sum -9.200 7.480 -9.681 15.307 Atomic orbital electron populations 1.21703 0.96525 1.00547 1.00297 1.21684 0.94011 1.00207 1.00637 1.18884 0.93328 0.89621 0.86225 0.99654 1.21491 0.93072 1.34354 1.03602 0.93435 1.25581 1.01258 0.96110 0.96066 1.70000 1.35801 1.40551 1.10169 0.85837 0.82249 0.77993 0.76818 1.20149 1.21531 1.20279 1.60630 1.41774 1.01158 1.26683 1.20775 0.92779 0.90174 0.93146 1.21713 0.97649 0.98424 1.00180 1.22639 0.98881 1.01511 0.99449 1.22081 0.93571 0.94430 0.94585 1.61974 1.02016 1.56404 1.05900 1.22787 1.00593 0.99442 0.87660 1.22752 0.81768 0.97088 0.99618 1.87927 1.36579 1.84864 1.22812 1.22745 0.98541 0.99937 0.80105 1.23213 0.89577 0.97113 1.02412 0.94559 0.92619 0.93106 0.95266 0.91808 0.93574 0.84543 0.94430 0.93618 0.92230 0.91598 0.91880 0.95119 0.93289 0.91262 0.94252 0.89449 0.92629 0.86793 0.92708 0.86949 0.88311 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 9.66 71.98 0.70 -4.35 16 2 C -0.13 -5.99 5.28 30.59 0.16 -5.82 16 3 C 0.23 11.03 1.30 44.17 0.06 11.08 16 4 H -0.01 -0.75 5.39 -2.38 -0.01 -0.76 16 5 C -0.49 -26.42 7.02 25.60 0.18 -26.24 16 6 H 0.05 2.64 7.39 -2.91 -0.02 2.62 16 7 C 0.01 0.37 5.29 84.65 0.45 0.82 16 8 N -0.92 -53.35 11.30 21.45 0.24 -53.10 16 9 Si 0.94 44.58 29.54 68.60 2.03 46.61 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.67 -27.01 5.92 -452.10 -2.68 -29.68 16 14 C 0.12 4.22 0.75 3.53 0.00 4.23 16 15 C -0.12 -4.56 7.31 71.99 0.53 -4.04 16 16 C -0.17 -5.26 6.51 71.98 0.47 -4.79 16 17 C 0.08 2.26 4.42 86.30 0.38 2.64 16 18 N -0.54 -13.54 3.76 -895.22 -3.37 -16.91 16 19 C 0.02 0.51 5.52 86.31 0.48 0.99 16 20 C 0.06 1.31 7.01 72.01 0.50 1.81 16 21 O -0.40 -9.32 10.83 -148.98 -1.61 -10.93 16 22 C 0.06 1.31 7.01 72.01 0.50 1.81 16 23 C 0.00 0.10 5.10 86.31 0.44 0.54 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.89 6.67 -2.38 -0.02 1.87 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.06 3.46 5.96 -2.39 -0.01 3.45 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.33 12.82 5.76 -89.70 -0.52 12.31 16 31 H 0.04 1.67 6.35 -2.39 -0.02 1.65 16 32 H 0.04 1.82 7.67 -2.39 -0.02 1.80 16 33 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.07 1.74 7.57 -2.39 -0.02 1.72 16 35 H 0.06 1.91 6.43 -2.39 -0.02 1.89 16 36 H 0.03 1.14 6.60 -2.39 -0.02 1.12 16 37 H 0.05 1.22 7.76 -2.39 -0.02 1.20 16 38 H 0.07 2.01 7.68 -2.39 -0.02 1.99 16 39 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 1.93 8.00 -2.39 -0.02 1.91 16 41 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.10 2.21 4.21 -2.39 -0.01 2.20 16 46 H 0.04 0.85 8.11 -2.39 -0.02 0.83 16 Total: -1.00 -59.97 337.99 -0.12 -60.09 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.43 Total: 25.24 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 4.85 Total: -21.31 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -5.80 Total: -99.69 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.61 Total: -10.93 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -59.97 -0.12 -60.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308648392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.565 kcal (2) G-P(sol) polarization free energy of solvation -59.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds