Wall clock time and date at job start Mon Mar 30 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46856 * 2 1 4 4 N 1.46904 * 109.47036 * 240.00296 * 2 1 3 5 5 C 1.46902 * 110.99505 * 176.04225 * 4 2 1 6 6 C 1.46899 * 110.99956 * 299.99668 * 4 2 1 7 7 C 1.52995 * 109.46956 * 163.25247 * 6 4 2 8 8 H 1.09007 * 109.46878 * 306.64549 * 7 6 4 9 9 O 1.42901 * 109.47522 * 66.64521 * 7 6 4 10 10 C 1.52995 * 109.47193 * 186.64725 * 7 6 4 11 11 N 1.46898 * 109.47369 * 180.02562 * 10 7 6 12 12 C 1.47440 * 111.00403 * 69.87145 * 11 10 7 13 13 C 1.54321 * 107.23603 * 123.25958 * 12 11 10 14 14 C 1.55133 * 103.01776 * 22.28376 * 13 12 11 15 15 H 1.09001 * 110.99215 * 82.47661 * 14 13 12 16 16 C 1.50702 * 110.99266 * 206.25807 * 14 13 12 17 17 H 1.07993 * 120.00409 * 118.54526 * 16 14 13 18 18 C 1.37880 * 119.99506 * 298.54789 * 16 14 13 19 19 N 1.31516 * 119.99684 * 179.97438 * 18 16 14 20 20 Si 1.86802 * 120.00245 * 359.97438 * 18 16 14 21 21 H 1.48507 * 109.46850 * 89.99932 * 20 18 16 22 22 H 1.48491 * 109.47193 * 210.00145 * 20 18 16 23 23 H 1.48500 * 109.47292 * 330.00659 * 20 18 16 24 24 C 1.47846 * 111.00134 * 190.71461 * 11 10 7 25 25 H 1.08998 * 109.47235 * 60.00526 * 1 2 3 26 26 H 1.08995 * 109.47099 * 299.99703 * 1 2 3 27 27 H 1.09004 * 109.46748 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47062 * 120.00224 * 2 1 3 29 29 H 1.09004 * 109.46537 * 59.99990 * 3 2 1 30 30 H 1.08995 * 109.47167 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46999 * 300.00226 * 3 2 1 32 32 H 1.09007 * 109.47232 * 67.45541 * 5 4 2 33 33 H 1.09001 * 109.47078 * 187.44858 * 5 4 2 34 34 H 1.09000 * 109.47566 * 307.45017 * 5 4 2 35 35 H 1.09005 * 109.47014 * 283.24687 * 6 4 2 36 36 H 1.08996 * 109.46965 * 43.24789 * 6 4 2 37 37 H 0.96694 * 114.00135 * 59.99386 * 9 7 6 38 38 H 1.09007 * 109.47065 * 299.99710 * 10 7 6 39 39 H 1.08998 * 109.47180 * 59.99678 * 10 7 6 40 40 H 1.09008 * 109.88966 * 242.66770 * 12 11 10 41 41 H 1.09001 * 109.88883 * 3.68627 * 12 11 10 42 42 H 1.08996 * 110.70192 * 140.66799 * 13 12 11 43 43 H 1.08994 * 110.70333 * 263.72706 * 13 12 11 44 44 H 0.97001 * 119.99772 * 180.02562 * 19 18 16 45 45 H 1.09003 * 110.37150 * 332.46307 * 24 11 10 46 46 H 1.09006 * 110.37619 * 94.80456 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 3.4851 -0.6306 -1.2816 6 6 1.5487 -2.0835 -1.2335 7 6 1.7090 -2.6417 -2.6489 8 1 1.2195 -1.9758 -3.3597 9 8 3.0985 -2.7403 -2.9677 10 6 1.0685 -4.0290 -2.7255 11 7 1.2229 -4.5653 -4.0844 12 6 2.6311 -4.9019 -4.3629 13 6 2.6747 -6.3917 -4.7629 14 6 1.2243 -6.6683 -5.2389 15 1 1.0854 -6.3514 -6.2725 16 6 0.8692 -8.1232 -5.0709 17 1 0.0567 -8.4090 -4.4194 18 6 1.5817 -9.0894 -5.7490 19 7 1.2721 -10.3591 -5.6020 20 14 2.9867 -8.5950 -6.8764 21 1 4.2532 -8.5578 -6.1018 22 1 3.1088 -9.5835 -7.9778 23 1 2.7150 -7.2506 -7.4456 24 6 0.4027 -5.7812 -4.2705 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 3.9195 -1.2191 -0.4735 33 1 3.8126 -1.0326 -2.2404 34 1 3.8107 0.4058 -1.1920 35 1 2.1360 -2.6830 -0.5378 36 1 0.4980 -2.1184 -0.9459 37 1 3.5980 -3.3182 -2.3748 38 1 1.5580 -4.6950 -2.0148 39 1 0.0086 -3.9538 -2.4824 40 1 3.0044 -4.2869 -5.1818 41 1 3.2352 -4.7371 -3.4706 42 1 3.3840 -6.5520 -5.5748 43 1 2.9267 -7.0140 -3.9043 44 1 1.7736 -11.0389 -6.0788 45 1 0.2589 -6.2914 -3.3181 46 1 -0.5597 -5.5256 -4.7142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397698063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:07 Heat of formation + Delta-G solvation = -59.081082 kcal Electronic energy + Delta-G solvation = -21881.454460 eV Core-core repulsion = 18805.284537 eV Total energy + Delta-G solvation = -3076.169923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54476 -39.32628 -37.42218 -34.98044 -33.27896 -32.79337 -30.81659 -29.98593 -28.60446 -26.77884 -25.82659 -24.55372 -22.57192 -21.78892 -21.33411 -20.80394 -18.86423 -17.47133 -17.32364 -16.96661 -16.69562 -16.36751 -16.03877 -15.63100 -15.05085 -14.90326 -14.71144 -14.33825 -14.15759 -13.84858 -13.64581 -13.46273 -13.15980 -13.05112 -12.89420 -12.73467 -12.60524 -12.53883 -12.33843 -12.23919 -11.94503 -11.81376 -11.72543 -11.55256 -11.40487 -11.30607 -11.11478 -10.74847 -10.42958 -9.21068 -9.14417 -8.32331 -6.36235 1.30883 1.35626 1.46354 2.32326 2.78449 3.03095 3.23939 3.52318 3.94151 3.98819 4.03630 4.07687 4.14921 4.16780 4.33282 4.38502 4.43262 4.46039 4.53681 4.61810 4.69000 4.72619 4.76902 4.83975 4.87738 4.88702 4.95262 4.96749 5.07023 5.08440 5.17871 5.25528 5.26949 5.35370 5.37251 5.46231 5.57120 5.66387 6.05332 6.15515 6.23634 6.27259 6.34331 6.69521 6.84393 7.29899 8.84332 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.044384 B = 0.003593 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.711984 B = 7790.288947 C = 8197.264680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.144 4.144 4 N -0.541 5.541 5 C 0.012 3.988 6 C 0.026 3.974 7 C 0.134 3.866 8 H 0.096 0.904 9 O -0.558 6.558 10 C 0.021 3.979 11 N -0.531 5.531 12 C 0.066 3.934 13 C -0.152 4.152 14 C 0.004 3.996 15 H 0.030 0.970 16 C -0.515 4.515 17 H 0.034 0.966 18 C 0.015 3.985 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.264 1.264 22 H -0.295 1.295 23 H -0.250 1.250 24 C 0.066 3.934 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.019 0.981 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.375 0.625 38 H 0.037 0.963 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.266 0.734 45 H 0.033 0.967 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 22.758 12.323 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 C -0.201 4.201 4 N -0.266 5.266 5 C -0.136 4.136 6 C -0.102 4.102 7 C 0.074 3.926 8 H 0.114 0.886 9 O -0.365 6.365 10 C -0.108 4.108 11 N -0.255 5.255 12 C -0.062 4.062 13 C -0.190 4.190 14 C -0.016 4.016 15 H 0.048 0.952 16 C -0.553 4.553 17 H 0.053 0.947 18 C -0.182 4.182 19 N -0.590 5.590 20 Si 0.772 3.228 21 H -0.189 1.189 22 H -0.222 1.222 23 H -0.174 1.174 24 C -0.061 4.061 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.224 0.776 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.201 23.652 11.075 26.312 hybrid contribution 1.049 -2.115 1.152 2.627 sum 4.250 21.537 12.227 25.127 Atomic orbital electron populations 1.21918 0.93858 1.02078 1.02526 1.21722 0.96190 0.95446 0.90450 1.21891 1.01115 0.94652 1.02452 1.61995 1.11279 1.14057 1.39263 1.22751 0.86595 1.01853 1.02386 1.22819 1.02085 0.88919 0.96409 1.21729 0.81576 0.93700 0.95545 0.88597 1.86656 1.20284 1.70486 1.59034 1.22927 1.02121 0.96574 0.89175 1.63506 1.07543 1.28800 1.25613 1.22777 0.89243 0.92836 1.01327 1.23158 0.98522 0.97292 1.00064 1.20174 0.92564 0.93312 0.95529 0.95151 1.21193 1.16482 0.90878 1.26756 0.94731 1.25835 1.00011 0.94540 0.97836 1.70046 1.42974 1.01280 1.44704 0.85861 0.79894 0.78436 0.78654 1.18935 1.22207 1.17384 1.22796 0.96824 0.88595 0.97879 0.92288 0.91044 0.92550 0.94760 0.91096 0.92362 0.92356 0.96206 0.89353 0.91133 0.94262 0.88890 0.77587 0.94518 0.89620 0.91298 0.90730 0.93140 0.92892 0.92497 0.94903 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.02 71.98 0.65 -1.38 16 2 C 0.07 1.07 2.68 44.92 0.12 1.19 16 3 C -0.14 -1.88 8.85 71.98 0.64 -1.25 16 4 N -0.54 -9.85 4.58 -897.02 -4.11 -13.96 16 5 C 0.01 0.20 8.81 127.69 1.13 1.33 16 6 C 0.03 0.47 4.64 86.30 0.40 0.87 16 7 C 0.13 2.93 3.42 30.59 0.10 3.03 16 8 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 9 O -0.56 -12.27 7.99 -148.98 -1.19 -13.46 16 10 C 0.02 0.54 4.46 86.30 0.38 0.93 16 11 N -0.53 -17.74 5.16 -885.52 -4.57 -22.31 16 12 C 0.07 2.19 5.52 86.65 0.48 2.67 16 13 C -0.15 -6.30 5.09 31.77 0.16 -6.14 16 14 C 0.00 0.17 2.41 -10.16 -0.02 0.15 16 15 H 0.03 1.49 7.41 -2.39 -0.02 1.47 16 16 C -0.51 -29.60 9.13 25.60 0.23 -29.36 16 17 H 0.03 2.18 8.03 -2.91 -0.02 2.16 16 18 C 0.01 0.88 5.46 84.66 0.46 1.34 16 19 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 20 Si 0.95 45.35 24.53 68.60 1.68 47.03 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.25 -11.33 6.48 99.48 0.64 -10.69 16 24 C 0.07 2.66 6.12 86.77 0.53 3.19 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.79 6.08 -2.38 -0.01 0.77 16 28 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.75 6.19 -2.39 -0.01 0.73 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.02 0.32 8.04 -2.38 -0.02 0.30 16 33 H 0.09 1.74 5.58 -2.39 -0.01 1.73 16 34 H 0.07 1.11 5.83 -2.39 -0.01 1.10 16 35 H 0.04 0.68 7.97 -2.38 -0.02 0.66 16 36 H 0.09 1.56 5.60 -2.39 -0.01 1.55 16 37 H 0.37 6.41 7.92 -74.06 -0.59 5.82 16 38 H 0.04 0.93 7.96 -2.38 -0.02 0.91 16 39 H 0.09 2.06 8.07 -2.39 -0.02 2.04 16 40 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.07 2.08 5.19 -2.39 -0.01 2.07 16 42 H 0.05 2.09 5.12 -2.39 -0.01 2.08 16 43 H 0.05 2.29 8.04 -2.39 -0.02 2.27 16 44 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.03 1.35 7.70 -2.39 -0.02 1.33 16 46 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 Total: -1.00 -65.52 336.70 -2.33 -67.85 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.30 Total: 17.72 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 5.26 Total: -23.43 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -8.38 Total: -95.70 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.19 Total: -13.46 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.68 Total: 47.03 kcal Total: -65.52 -2.33 -67.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397698063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.768 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds