Wall clock time and date at job start Mon Mar 30 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 N 1.46898 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.46893 * 111.00127 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47437 * 179.97438 * 5 4 3 7 7 H 1.09004 * 110.62895 * 303.34769 * 6 5 4 8 8 C 1.55138 * 110.70598 * 66.45088 * 6 5 4 9 9 C 1.54908 * 101.68619 * 154.02265 * 8 6 5 10 10 N 1.47887 * 104.77420 * 322.97931 * 9 8 6 11 11 C 1.46907 * 111.01481 * 146.33028 * 10 9 8 12 12 C 1.52999 * 109.46947 * 49.12722 * 11 10 9 13 13 O 1.42901 * 109.47507 * 64.99664 * 12 11 10 14 14 C 1.42896 * 113.99986 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46871 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00495 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99974 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99690 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99989 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47052 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47177 * 119.99982 * 19 17 15 22 22 H 1.48501 * 109.46895 * 239.99783 * 19 17 15 23 23 C 1.47444 * 108.58784 * 24.04325 * 10 9 8 24 24 H 1.09005 * 109.46818 * 60.00240 * 1 2 3 25 25 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46616 * 300.00018 * 1 2 3 27 27 H 1.09003 * 109.46932 * 240.00158 * 2 1 3 28 28 H 1.08994 * 109.47139 * 120.00182 * 2 1 3 29 29 H 1.08998 * 109.47040 * 59.99790 * 3 2 1 30 30 H 1.09005 * 109.47094 * 299.99591 * 3 2 1 31 31 H 1.00903 * 111.00330 * 56.04140 * 4 3 2 32 32 H 1.09003 * 109.47151 * 59.99826 * 5 4 3 33 33 H 1.09000 * 109.47354 * 300.00097 * 5 4 3 34 34 H 1.09002 * 110.99302 * 272.13266 * 8 6 5 35 35 H 1.08995 * 110.99003 * 35.91153 * 8 6 5 36 36 H 1.08993 * 110.37866 * 81.77867 * 9 8 6 37 37 H 1.09005 * 110.37455 * 204.12444 * 9 8 6 38 38 H 1.09001 * 109.46696 * 169.12028 * 11 10 9 39 39 H 1.09004 * 109.47057 * 289.12370 * 11 10 9 40 40 H 1.09000 * 109.46749 * 184.99883 * 12 11 10 41 41 H 1.09000 * 109.46782 * 305.00005 * 12 11 10 42 42 H 1.09000 * 109.47474 * 300.00043 * 14 13 12 43 43 H 1.09001 * 109.46876 * 60.00694 * 14 13 12 44 44 H 0.97008 * 119.99336 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.89066 * 239.63908 * 23 10 9 46 46 H 1.09001 * 109.89084 * 118.44467 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 2.8139 -0.0013 6 6 5.5649 2.7731 -0.0012 7 1 5.9339 2.2027 0.8512 8 6 6.0978 2.1783 -1.3313 9 6 7.5021 2.8256 -1.4241 10 7 7.3225 4.1941 -0.8931 11 6 8.5266 4.6461 -0.1832 12 6 9.7581 4.3913 -1.0546 13 8 9.6858 5.2009 -2.2299 14 6 10.7946 5.0385 -3.1166 15 6 10.6151 5.9349 -4.3147 16 1 9.7416 6.5653 -4.3915 17 6 11.5657 5.9496 -5.3133 18 7 12.6293 5.1816 -5.2200 19 14 11.3436 7.0613 -6.7980 20 1 10.0738 7.8193 -6.6632 21 1 12.4817 8.0116 -6.8794 22 1 11.2985 6.2362 -8.0318 23 6 6.1489 4.2016 -0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 3.8704 0.9165 -0.7822 32 1 3.6863 3.3375 0.8887 33 1 3.6856 3.3370 -0.8912 34 1 6.1716 1.0924 -1.2716 35 1 5.4727 2.4795 -2.1718 36 1 8.2160 2.2727 -0.8136 37 1 7.8358 2.8611 -2.4612 38 1 8.4452 5.7124 0.0278 39 1 8.6240 4.0967 0.7532 40 1 10.6582 4.6438 -0.4942 41 1 9.7904 3.3396 -1.3394 42 1 11.7160 5.3048 -2.5989 43 1 10.8488 4.0003 -3.4442 44 1 13.2982 5.1922 -5.9224 45 1 5.4050 4.9064 -0.3719 46 1 6.4528 4.4775 1.0093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719068931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:32 Heat of formation + Delta-G solvation = -59.663034 kcal Electronic energy + Delta-G solvation = -20652.907356 eV Core-core repulsion = 17576.712198 eV Total energy + Delta-G solvation = -3076.195158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.36623 -37.18832 -36.30856 -33.92134 -32.69318 -31.65484 -29.35398 -28.49394 -26.74667 -25.64883 -23.39785 -22.65219 -22.21627 -21.68294 -20.14328 -20.07942 -16.69592 -16.37427 -16.02778 -15.75900 -15.39757 -15.18150 -14.63384 -14.39237 -14.21424 -13.81776 -13.63092 -13.38088 -13.15704 -12.87877 -12.55504 -12.36659 -12.18386 -11.90992 -11.65810 -11.51377 -11.38100 -11.10375 -11.03792 -10.92791 -10.82079 -10.74707 -10.62971 -10.56006 -10.36063 -9.91359 -9.03096 -8.75917 -8.71818 -8.09739 -7.99101 -6.06675 -4.07356 3.32077 3.38338 3.45729 3.81302 4.16866 4.39541 4.53203 4.60823 4.68874 4.70470 4.89585 4.94998 5.03634 5.19328 5.25519 5.29851 5.34463 5.36254 5.38384 5.41787 5.44713 5.58150 5.63078 5.66609 5.71634 5.80884 5.81891 5.88706 5.91226 6.00958 6.04468 6.12642 6.25712 6.28565 6.41030 6.73916 7.09212 7.14854 7.22733 7.33344 7.48118 7.85816 8.21621 8.66402 9.07928 9.57398 11.05051 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.027625 B = 0.002733 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.313897 B =10243.908522 C =10787.630220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.057 3.943 4 N -0.693 5.693 5 C 0.071 3.929 6 C -0.107 4.107 7 H 0.081 0.919 8 C -0.127 4.127 9 C 0.045 3.955 10 N -0.514 5.514 11 C 0.056 3.944 12 C 0.061 3.939 13 O -0.380 6.380 14 C 0.193 3.807 15 C -0.509 4.509 16 H 0.067 0.933 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.047 3.953 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.341 0.659 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.262 0.738 45 H 0.075 0.925 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.385 -9.428 12.692 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.324 5.324 5 C -0.059 4.059 6 C -0.127 4.127 7 H 0.100 0.900 8 C -0.165 4.165 9 C -0.082 4.082 10 N -0.238 5.238 11 C -0.071 4.071 12 C -0.017 4.017 13 O -0.299 6.299 14 C 0.119 3.881 15 C -0.547 4.547 16 H 0.086 0.914 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.081 4.081 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.159 0.841 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.392 -9.044 12.831 24.949 hybrid contribution 0.339 0.048 -0.969 1.028 sum -19.053 -8.996 11.861 24.180 Atomic orbital electron populations 1.21733 0.95575 1.01792 1.01828 1.21510 0.95593 0.96428 1.02602 1.22005 0.87742 0.96971 1.00513 1.60490 1.07214 1.14452 1.50204 1.21912 0.93967 0.89321 1.00656 1.22423 0.94575 0.97007 0.98714 0.90031 1.22793 0.96952 0.99748 0.96983 1.23049 0.95765 0.87903 1.01520 1.63593 1.02994 1.23583 1.33679 1.22343 0.89676 1.01316 0.93815 1.22360 0.95380 0.95001 0.89009 1.87960 1.47383 1.63575 1.31001 1.20185 0.83768 0.96243 0.87919 1.21110 1.06984 1.23553 1.03064 0.91450 1.24961 0.94938 0.96166 0.98618 1.69983 1.10428 1.39337 1.34254 0.86291 0.78237 0.80202 0.81840 1.19452 1.20911 1.20900 1.22868 0.93797 0.95866 0.95608 0.92811 0.92530 0.92648 0.92140 0.91146 0.91132 0.95332 0.84066 0.91072 0.94722 0.90954 0.90944 0.93841 0.89516 0.90080 0.94376 0.94314 0.94428 0.97996 0.97959 0.92815 0.90664 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.83 6.19 -26.73 -0.17 -0.99 16 3 C 0.06 0.44 5.69 -3.82 -0.02 0.42 16 4 N -0.69 -6.07 6.50 -113.78 -0.74 -6.81 16 5 C 0.07 0.66 5.04 -3.83 -0.02 0.64 16 6 C -0.11 -1.12 3.20 -88.80 -0.28 -1.40 16 7 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 8 C -0.13 -1.43 5.71 -24.59 -0.14 -1.57 16 9 C 0.05 0.66 5.22 -2.27 -0.01 0.64 16 10 N -0.51 -8.06 5.26 -231.20 -1.22 -9.28 16 11 C 0.06 0.89 5.21 -3.82 -0.02 0.87 16 12 C 0.06 1.16 5.74 37.16 0.21 1.37 16 13 O -0.38 -9.47 10.27 -35.23 -0.36 -9.83 16 14 C 0.19 5.44 5.69 36.00 0.20 5.64 16 15 C -0.51 -15.34 9.43 -34.44 -0.32 -15.67 16 16 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 19 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 C 0.05 0.58 6.47 -2.83 -0.02 0.56 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.34 2.87 7.92 -39.29 -0.31 2.56 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.34 8.10 -51.93 -0.42 -0.08 16 34 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 36 H 0.04 0.60 7.05 -51.93 -0.37 0.24 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.04 0.51 7.96 -51.93 -0.41 0.10 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.70 6.29 -51.93 -0.33 0.37 16 42 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.08 0.92 7.82 -51.93 -0.41 0.51 16 46 H 0.05 0.59 7.49 -51.93 -0.39 0.20 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -31.76 364.02 -10.37 -42.13 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -8.93 Total: -3.78 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.32 Total: -8.51 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -1.22 Total: -42.73 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.36 Total: -9.83 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.76 -10.37 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719068931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.538 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds