Wall clock time and date at job start Mon Mar 30 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 N 1.46898 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.46893 * 111.00127 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47437 * 179.97438 * 5 4 3 7 7 H 1.09004 * 110.62895 * 303.34769 * 6 5 4 8 8 C 1.55138 * 110.70598 * 66.45088 * 6 5 4 9 9 C 1.54908 * 101.68619 * 154.02265 * 8 6 5 10 10 N 1.47887 * 104.77420 * 322.97931 * 9 8 6 11 11 C 1.46907 * 111.01481 * 146.33028 * 10 9 8 12 12 C 1.52999 * 109.46947 * 49.12722 * 11 10 9 13 13 O 1.42901 * 109.47507 * 64.99664 * 12 11 10 14 14 C 1.42896 * 113.99986 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46871 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00495 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99974 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99690 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99989 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47052 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47177 * 119.99982 * 19 17 15 22 22 H 1.48501 * 109.46895 * 239.99783 * 19 17 15 23 23 C 1.47444 * 108.58784 * 24.04325 * 10 9 8 24 24 H 1.09005 * 109.46818 * 60.00240 * 1 2 3 25 25 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46616 * 300.00018 * 1 2 3 27 27 H 1.09003 * 109.46932 * 240.00158 * 2 1 3 28 28 H 1.08994 * 109.47139 * 120.00182 * 2 1 3 29 29 H 1.08998 * 109.47040 * 59.99790 * 3 2 1 30 30 H 1.09005 * 109.47094 * 299.99591 * 3 2 1 31 31 H 1.00903 * 111.00330 * 56.04140 * 4 3 2 32 32 H 1.09003 * 109.47151 * 59.99826 * 5 4 3 33 33 H 1.09000 * 109.47354 * 300.00097 * 5 4 3 34 34 H 1.09002 * 110.99302 * 272.13266 * 8 6 5 35 35 H 1.08995 * 110.99003 * 35.91153 * 8 6 5 36 36 H 1.08993 * 110.37866 * 81.77867 * 9 8 6 37 37 H 1.09005 * 110.37455 * 204.12444 * 9 8 6 38 38 H 1.09001 * 109.46696 * 169.12028 * 11 10 9 39 39 H 1.09004 * 109.47057 * 289.12370 * 11 10 9 40 40 H 1.09000 * 109.46749 * 184.99883 * 12 11 10 41 41 H 1.09000 * 109.46782 * 305.00005 * 12 11 10 42 42 H 1.09000 * 109.47474 * 300.00043 * 14 13 12 43 43 H 1.09001 * 109.46876 * 60.00694 * 14 13 12 44 44 H 0.97008 * 119.99336 * 180.02562 * 18 17 15 45 45 H 1.08998 * 109.89066 * 239.63908 * 23 10 9 46 46 H 1.09001 * 109.89084 * 118.44467 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 2.8139 -0.0013 6 6 5.5649 2.7731 -0.0012 7 1 5.9339 2.2027 0.8512 8 6 6.0978 2.1783 -1.3313 9 6 7.5021 2.8256 -1.4241 10 7 7.3225 4.1941 -0.8931 11 6 8.5266 4.6461 -0.1832 12 6 9.7581 4.3913 -1.0546 13 8 9.6858 5.2009 -2.2299 14 6 10.7946 5.0385 -3.1166 15 6 10.6151 5.9349 -4.3147 16 1 9.7416 6.5653 -4.3915 17 6 11.5657 5.9496 -5.3133 18 7 12.6293 5.1816 -5.2200 19 14 11.3436 7.0613 -6.7980 20 1 10.0738 7.8193 -6.6632 21 1 12.4817 8.0116 -6.8794 22 1 11.2985 6.2362 -8.0318 23 6 6.1489 4.2016 -0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 3.8704 0.9165 -0.7822 32 1 3.6863 3.3375 0.8887 33 1 3.6856 3.3370 -0.8912 34 1 6.1716 1.0924 -1.2716 35 1 5.4727 2.4795 -2.1718 36 1 8.2160 2.2727 -0.8136 37 1 7.8358 2.8611 -2.4612 38 1 8.4452 5.7124 0.0278 39 1 8.6240 4.0967 0.7532 40 1 10.6582 4.6438 -0.4942 41 1 9.7904 3.3396 -1.3394 42 1 11.7160 5.3048 -2.5989 43 1 10.8488 4.0003 -3.4442 44 1 13.2982 5.1922 -5.9224 45 1 5.4050 4.9064 -0.3719 46 1 6.4528 4.4775 1.0093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719068931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:32 Heat of formation + Delta-G solvation = -82.139271 kcal Electronic energy + Delta-G solvation = -20653.881999 eV Core-core repulsion = 17576.712198 eV Total energy + Delta-G solvation = -3077.169801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43987 -38.53282 -37.52084 -35.10951 -34.54973 -32.67713 -30.34072 -30.04116 -28.58373 -26.47255 -24.51857 -24.20176 -23.81298 -22.27802 -21.33080 -20.99479 -18.63948 -17.52340 -17.40812 -17.24981 -16.47539 -16.43358 -16.00524 -15.59693 -15.36433 -15.14205 -14.75447 -14.64441 -14.16438 -13.98658 -13.70186 -13.41097 -13.27302 -13.14536 -12.86912 -12.84173 -12.68729 -12.58371 -12.27541 -12.17873 -12.10733 -11.82536 -11.70689 -11.63666 -11.50600 -11.43922 -11.25625 -10.86603 -10.19792 -9.39949 -9.14158 -8.32755 -6.44630 1.38940 1.40629 1.55705 2.34619 2.99126 3.00672 3.12952 3.26906 3.67703 3.71563 3.99356 4.06422 4.17809 4.22059 4.23974 4.31209 4.40767 4.46100 4.50945 4.56068 4.60015 4.64205 4.69304 4.80720 4.81186 4.82019 4.86478 4.93186 4.95792 4.99665 5.10526 5.14413 5.17972 5.20169 5.30736 5.36696 5.42094 5.55115 5.96489 6.04928 6.10541 6.19033 6.43254 6.55840 6.84880 7.27508 8.79848 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.027625 B = 0.002733 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.313897 B =10243.908522 C =10787.630220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.058 3.942 4 N -0.696 5.696 5 C 0.077 3.923 6 C -0.093 4.093 7 H 0.087 0.913 8 C -0.117 4.117 9 C 0.044 3.956 10 N -0.545 5.545 11 C 0.065 3.935 12 C 0.051 3.949 13 O -0.396 6.396 14 C 0.209 3.791 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.984 3.016 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.270 1.270 23 C 0.048 3.952 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.343 0.657 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.040 0.960 42 H -0.016 1.016 43 H -0.018 1.018 44 H 0.271 0.729 45 H 0.073 0.927 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.630 -9.443 13.026 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.072 4.072 4 N -0.327 5.327 5 C -0.052 4.052 6 C -0.113 4.113 7 H 0.105 0.895 8 C -0.155 4.155 9 C -0.084 4.084 10 N -0.270 5.270 11 C -0.063 4.063 12 C -0.026 4.026 13 O -0.315 6.315 14 C 0.134 3.866 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.194 4.194 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.080 4.080 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.161 0.839 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.002 0.998 43 H 0.000 1.000 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.649 -9.072 13.191 26.128 hybrid contribution 0.733 0.005 -1.007 1.245 sum -19.916 -9.067 12.183 25.046 Atomic orbital electron populations 1.21723 0.94819 1.02248 1.01991 1.21476 0.96224 0.95696 1.02380 1.22029 0.87077 0.97599 1.00446 1.60506 1.07897 1.14016 1.50324 1.21819 0.93006 0.89711 1.00687 1.22303 0.95253 0.95661 0.98091 0.89485 1.22728 0.94727 1.00585 0.97450 1.22963 0.97885 0.88090 0.99453 1.63489 1.03872 1.24343 1.35253 1.22265 0.88241 1.01701 0.94060 1.22709 0.97901 0.94443 0.87540 1.87913 1.46072 1.64961 1.32571 1.19796 0.84049 0.94638 0.88129 1.21397 1.07476 1.24657 1.04697 0.92297 1.25983 0.94151 0.97497 1.01749 1.70082 1.11086 1.40299 1.35566 0.85124 0.78612 0.78132 0.77456 1.18978 1.19500 1.19553 1.22893 0.92468 0.97036 0.95613 0.92768 0.91954 0.92373 0.92142 0.91553 0.91050 0.95505 0.83882 0.90412 0.95364 0.89193 0.91522 0.93251 0.93140 0.90419 0.91049 0.93478 0.94153 0.99820 0.99999 0.92049 0.90851 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.44 6.19 30.60 0.19 -1.25 16 3 C 0.06 0.80 5.69 86.30 0.49 1.29 16 4 N -0.70 -10.94 6.50 -513.89 -3.34 -14.28 16 5 C 0.08 1.29 5.04 86.31 0.43 1.72 16 6 C -0.09 -1.76 3.20 -9.61 -0.03 -1.79 16 7 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 8 C -0.12 -2.52 5.71 31.98 0.18 -2.33 16 9 C 0.04 1.27 5.22 86.77 0.45 1.72 16 10 N -0.54 -16.80 5.26 -885.40 -4.66 -21.46 16 11 C 0.07 2.00 5.21 86.30 0.45 2.45 16 12 C 0.05 1.99 5.74 71.98 0.41 2.40 16 13 O -0.40 -20.34 10.27 -148.98 -1.53 -21.87 16 14 C 0.21 12.22 5.69 71.24 0.41 12.63 16 15 C -0.54 -33.63 9.43 25.60 0.24 -33.39 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.00 0.26 5.46 84.66 0.46 0.72 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 19 Si 0.98 45.53 29.54 68.60 2.03 47.55 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.05 1.09 6.47 86.65 0.56 1.65 16 24 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.34 5.18 7.92 -89.69 -0.71 4.47 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 0.51 8.10 -2.39 -0.02 0.49 16 34 H 0.09 1.62 8.11 -2.39 -0.02 1.60 16 35 H 0.07 1.52 8.02 -2.39 -0.02 1.50 16 36 H 0.05 1.35 7.05 -2.39 -0.02 1.33 16 37 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.07 1.73 7.96 -2.39 -0.02 1.71 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 41 H 0.04 1.54 6.29 -2.39 -0.02 1.52 16 42 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 44 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 45 H 0.07 1.70 7.82 -2.39 -0.02 1.68 16 46 H 0.07 1.34 7.49 -2.39 -0.02 1.32 16 Total: -1.00 -68.62 364.02 -2.05 -70.68 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.20 Total: 11.14 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.97 Total: -14.97 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -7.72 Total: -92.53 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.53 Total: -21.87 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.62 -2.05 -70.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719068931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.463 kcal (2) G-P(sol) polarization free energy of solvation -68.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds