Wall clock time and date at job start Mon Mar 30 2020 05:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 N 1.46903 * 109.47259 * 119.99764 * 2 1 3 5 5 C 1.46902 * 110.99527 * 79.12267 * 4 2 1 6 6 C 1.50693 * 109.47757 * 71.97568 * 5 4 2 7 7 H 1.08005 * 119.99695 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00443 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00208 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00092 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47354 * 90.00100 * 10 8 6 12 12 H 1.48499 * 109.46949 * 210.00175 * 10 8 6 13 13 H 1.48501 * 109.47091 * 329.99705 * 10 8 6 14 14 C 1.46895 * 111.00045 * 315.16831 * 4 2 1 15 15 H 1.09001 * 109.47471 * 86.35050 * 14 4 2 16 16 C 1.52991 * 109.47342 * 326.34640 * 14 4 2 17 17 C 1.53004 * 109.46640 * 206.35001 * 14 4 2 18 18 C 1.52995 * 109.47147 * 292.87221 * 17 14 4 19 19 H 1.08996 * 109.54455 * 324.62526 * 18 17 14 20 20 C 1.53103 * 109.50937 * 204.51314 * 18 17 14 21 21 O 1.43009 * 109.25841 * 183.21950 * 20 18 17 22 22 C 1.43016 * 113.73900 * 58.67214 * 21 20 18 23 23 C 1.53091 * 109.25966 * 301.32490 * 22 21 20 24 24 N 1.47015 * 109.25724 * 56.85151 * 23 22 21 25 25 H 1.09005 * 109.46751 * 275.79403 * 1 2 3 26 26 H 1.09003 * 109.47068 * 35.79121 * 1 2 3 27 27 H 1.08996 * 109.47334 * 155.79308 * 1 2 3 28 28 H 1.08996 * 109.47486 * 240.00391 * 2 1 3 29 29 H 1.09004 * 109.47565 * 171.55922 * 3 2 1 30 30 H 1.08993 * 109.47582 * 291.56041 * 3 2 1 31 31 H 1.09005 * 109.47054 * 51.56124 * 3 2 1 32 32 H 1.09002 * 109.46833 * 191.98056 * 5 4 2 33 33 H 1.09006 * 109.47015 * 311.97559 * 5 4 2 34 34 H 0.97000 * 120.00614 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47752 * 171.96079 * 16 14 4 36 36 H 1.09003 * 109.47416 * 291.96749 * 16 14 4 37 37 H 1.09004 * 109.46968 * 51.96484 * 16 14 4 38 38 H 1.09005 * 109.46546 * 172.87694 * 17 14 4 39 39 H 1.08995 * 109.47182 * 52.88012 * 17 14 4 40 40 H 1.09000 * 109.50626 * 63.28117 * 20 18 17 41 41 H 1.09000 * 109.54054 * 303.18040 * 20 18 17 42 42 H 1.09007 * 109.50933 * 181.39148 * 22 21 20 43 43 H 1.08998 * 109.50853 * 61.26827 * 22 21 20 44 44 H 1.08996 * 109.50957 * 296.91459 * 23 22 21 45 45 H 1.09007 * 109.54556 * 176.80428 * 23 22 21 46 46 H 1.00899 * 111.00570 * 65.15505 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.9511 -2.1501 1.0306 6 6 3.0137 -2.5938 0.0585 7 1 3.6742 -1.8658 -0.3889 8 6 3.1433 -3.9292 -0.2591 9 7 2.3393 -4.8158 0.2860 10 14 4.4610 -4.4792 -1.4636 11 1 5.7102 -4.7896 -0.7231 12 1 3.9979 -5.6926 -2.1837 13 1 4.7222 -3.3927 -2.4416 14 6 1.2783 -0.2653 2.3935 15 1 0.3771 -0.8697 2.4972 16 6 0.8908 1.2080 2.2533 17 6 2.1586 -0.4456 3.6319 18 6 2.3994 -1.9370 3.8737 19 1 1.5065 -2.4994 3.6012 20 6 2.7189 -2.1700 5.3528 21 8 3.0166 -3.5536 5.5587 22 6 4.1167 -4.0282 4.7777 23 6 3.8115 -3.8141 3.2929 24 7 3.5338 -2.3900 3.0555 25 1 -0.3633 0.1038 1.0225 26 1 -0.3633 0.8336 -0.6010 27 1 -0.3634 -0.9373 -0.4214 28 1 1.8934 -0.5137 -0.8900 29 1 3.1195 1.4463 0.1508 30 1 1.8051 1.9110 -0.9557 31 1 1.5587 1.9980 0.8050 32 1 2.1136 -2.6354 1.9930 33 1 0.9691 -2.4255 0.6460 34 1 2.4307 -5.7554 0.0629 35 1 0.2218 1.4869 3.0673 36 1 1.7884 1.8252 2.2931 37 1 0.3861 1.3618 1.2995 38 1 1.6590 -0.0130 4.4988 39 1 3.1134 0.0560 3.4750 40 1 1.8583 -1.8886 5.9597 41 1 3.5796 -1.5658 5.6395 42 1 4.2671 -5.0908 4.9688 43 1 5.0184 -3.4782 5.0471 44 1 2.9411 -4.4065 3.0111 45 1 4.6701 -4.1219 2.6960 46 1 4.3531 -1.8277 3.2304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157086067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:13 Heat of formation + Delta-G solvation = 28.271847 kcal Electronic energy + Delta-G solvation = -23686.503713 eV Core-core repulsion = 20614.121697 eV Total energy + Delta-G solvation = -3072.382015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.69767 -38.44931 -34.70935 -32.96396 -32.27797 -30.49425 -30.23594 -26.65938 -26.45692 -25.76279 -25.12736 -22.33901 -21.83898 -20.60274 -20.24046 -18.58042 -15.94552 -15.81191 -15.73092 -15.30331 -15.04370 -14.71111 -14.44209 -14.11697 -14.06446 -13.55637 -13.05907 -12.68687 -12.24324 -12.03779 -11.83773 -11.73197 -11.47369 -11.17467 -11.11392 -11.00018 -10.73835 -10.66152 -10.58765 -10.56130 -10.36371 -10.33030 -10.22880 -10.00890 -9.63508 -9.24683 -9.09587 -8.70827 -8.10475 -7.10248 -6.80912 -5.73355 -3.65354 3.41917 3.49241 3.52999 4.17257 4.62550 4.79674 5.05555 5.09235 5.33662 5.40342 5.53291 5.57416 5.62857 5.70620 5.75481 5.77382 5.84391 5.89093 5.92548 6.00326 6.04077 6.14304 6.15051 6.19458 6.27871 6.34467 6.37760 6.49654 6.59275 6.63347 6.73379 6.79316 6.96281 6.99775 7.09240 7.44329 7.73765 7.74750 7.83123 8.11986 8.19474 8.57473 8.76042 8.97867 9.39816 9.92076 11.37816 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.011221 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.522391 B = 2494.685160 C = 4463.549963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.080 3.920 3 C -0.179 4.179 4 N -0.508 5.508 5 C 0.171 3.829 6 C -0.455 4.455 7 H 0.050 0.950 8 C 0.054 3.946 9 N -0.904 5.904 10 Si 0.878 3.122 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.086 3.914 15 H 0.030 0.970 16 C -0.184 4.184 17 C -0.094 4.094 18 C 0.056 3.944 19 H 0.089 0.911 20 C 0.025 3.975 21 O -0.387 6.387 22 C 0.017 3.983 23 C 0.034 3.966 24 N -0.618 5.618 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.098 0.902 33 H -0.035 1.035 34 H 0.252 0.748 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.089 0.911 43 H 0.039 0.961 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 8.499 7.781 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.029 4.029 3 C -0.236 4.236 4 N -0.232 5.232 5 C 0.046 3.954 6 C -0.494 4.494 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.547 5.547 10 Si 0.708 3.292 11 H -0.213 1.213 12 H -0.220 1.220 13 H -0.205 1.205 14 C -0.023 4.023 15 H 0.048 0.952 16 C -0.240 4.240 17 C -0.132 4.132 18 C -0.055 4.055 19 H 0.107 0.893 20 C -0.054 4.054 21 O -0.306 6.306 22 C -0.061 4.061 23 C -0.096 4.096 24 N -0.246 5.246 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.115 0.885 33 H -0.017 1.017 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.115 0.885 45 H 0.098 0.902 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.404 8.204 7.384 11.045 hybrid contribution 0.555 -0.603 -0.249 0.856 sum 0.151 7.601 7.136 10.426 Atomic orbital electron populations 1.22853 0.99545 1.00955 1.01903 1.21563 0.90972 0.94278 0.96128 1.22945 1.02217 0.97203 1.01231 1.62390 1.51611 1.10309 0.98939 1.20574 0.93411 0.80458 1.00933 1.21002 1.14762 0.91381 1.22304 0.93183 1.24761 0.96023 0.96907 0.96741 1.69938 1.38593 1.01153 1.45011 0.86833 0.82674 0.77817 0.81876 1.21344 1.22032 1.20539 1.21433 0.94126 0.94017 0.92753 0.95190 1.23184 1.01155 0.97151 1.02482 1.21560 1.00740 0.94281 0.96657 1.22266 0.97066 0.96856 0.89293 0.89308 1.23410 1.00197 0.82886 0.98862 1.87992 1.51953 1.25421 1.65219 1.23451 0.88219 0.99778 0.94677 1.22565 1.04190 0.91316 0.91509 1.61308 1.07017 1.02045 1.54247 0.91347 0.93642 0.93124 0.89889 0.92613 0.94590 0.89744 0.88515 1.01715 0.93854 0.94306 0.91820 0.88735 0.92617 0.91082 0.89438 0.93941 0.89284 0.94245 0.88473 0.90187 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 7.65 37.16 0.28 -3.05 16 2 C 0.08 1.51 2.73 -67.71 -0.18 1.33 16 3 C -0.18 -2.82 8.44 37.16 0.31 -2.50 16 4 N -0.51 -10.11 4.10 -220.15 -0.90 -11.01 16 5 C 0.17 4.12 3.41 -4.98 -0.02 4.11 16 6 C -0.46 -12.11 8.02 -34.45 -0.28 -12.39 16 7 H 0.05 1.39 7.69 -52.48 -0.40 0.98 16 8 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 9 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 10 Si 0.88 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 14 C 0.09 1.44 1.61 -67.72 -0.11 1.33 16 15 H 0.03 0.56 7.04 -51.93 -0.37 0.19 16 16 C -0.18 -2.54 6.44 37.15 0.24 -2.30 16 17 C -0.09 -1.40 4.69 -26.73 -0.13 -1.53 16 18 C 0.06 0.92 1.79 -67.60 -0.12 0.80 16 19 H 0.09 1.74 6.76 -51.93 -0.35 1.39 16 20 C 0.03 0.37 6.15 37.21 0.23 0.60 16 21 O -0.39 -6.58 10.83 -35.23 -0.38 -6.96 16 22 C 0.02 0.27 7.00 37.20 0.26 0.53 16 23 C 0.03 0.64 6.37 -3.71 -0.02 0.61 16 24 N -0.62 -11.30 3.32 -106.45 -0.35 -11.65 16 25 H 0.07 1.11 4.17 -51.93 -0.22 0.90 16 26 H 0.04 0.67 7.92 -51.93 -0.41 0.26 16 27 H 0.05 0.97 7.81 -51.93 -0.41 0.56 16 28 H 0.08 1.84 7.05 -51.93 -0.37 1.47 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.18 3.33 -54.16 -0.18 1.00 16 32 H 0.10 2.32 2.22 -52.81 -0.12 2.21 16 33 H -0.03 -0.97 7.32 -51.93 -0.38 -1.35 16 34 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.86 6.71 -51.93 -0.35 0.51 16 37 H 0.09 1.33 2.90 -51.93 -0.15 1.18 16 38 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 39 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 2.16 7.91 -51.93 -0.41 1.75 16 45 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 46 H 0.32 5.53 8.61 -39.29 -0.34 5.19 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -28.20 328.84 -8.37 -36.58 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.78 Total: 7.45 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 0.37 Total: -11.09 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.52 Total: -47.52 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.38 Total: -6.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.20 -8.37 -36.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157086067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.851 kcal (2) G-P(sol) polarization free energy of solvation -28.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds