Wall clock time and date at job start Mon Mar 30 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46892 * 109.47486 * 295.00155 * 4 2 1 6 6 C 1.46903 * 111.00235 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47219 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47135 * 64.99661 * 7 6 5 9 9 C 1.42896 * 114.00143 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47510 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99414 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00545 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00199 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99555 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47034 * 90.00001 * 14 12 10 16 16 H 1.48503 * 109.47043 * 209.99586 * 14 12 10 17 17 H 1.48503 * 109.47412 * 329.99528 * 14 12 10 18 18 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 19 19 N 1.46901 * 109.46818 * 65.00620 * 18 2 1 20 20 C 1.48528 * 111.00412 * 52.59954 * 19 18 2 21 21 C 1.54932 * 103.22764 * 159.72006 * 20 19 18 22 22 C 1.54593 * 102.92718 * 322.58899 * 21 20 19 23 23 C 1.47901 * 110.99850 * 170.00033 * 19 18 2 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 29 29 H 1.00902 * 111.00150 * 56.04186 * 5 4 2 30 30 H 1.08991 * 109.46891 * 299.99685 * 6 5 4 31 31 H 1.09001 * 109.47244 * 59.99987 * 6 5 4 32 32 H 1.08997 * 109.47390 * 185.00282 * 7 6 5 33 33 H 1.09004 * 109.47097 * 305.00370 * 7 6 5 34 34 H 1.09000 * 109.47002 * 300.00217 * 9 8 7 35 35 H 1.08997 * 109.47191 * 60.00586 * 9 8 7 36 36 H 0.96995 * 119.99504 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47069 * 184.99942 * 18 2 1 38 38 H 1.08991 * 109.47625 * 305.00262 * 18 2 1 39 39 H 1.09000 * 110.66772 * 278.16041 * 20 19 18 40 40 H 1.08998 * 110.67010 * 41.28861 * 20 19 18 41 41 H 1.09007 * 110.72548 * 204.22509 * 21 20 19 42 42 H 1.09006 * 110.72623 * 80.94805 * 21 20 19 43 43 H 1.09003 * 110.30885 * 263.04757 * 22 21 20 44 44 H 1.08991 * 110.31468 * 140.86889 * 22 21 20 45 45 H 1.09002 * 109.91776 * 333.50131 * 23 19 18 46 46 H 1.08998 * 109.91738 * 94.60624 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1257 -0.6266 3.6672 7 6 1.7033 0.1915 4.8892 8 8 0.2779 0.1956 4.9902 9 6 -0.2238 0.9367 6.1042 10 6 -1.7294 0.8731 6.1130 11 1 -2.2510 0.3214 5.3449 12 6 -2.4411 1.5182 7.1022 13 7 -3.7550 1.4630 7.1095 14 14 -1.5388 2.4718 8.4310 15 1 -1.3536 3.8782 7.9919 16 1 -2.3334 2.4454 9.6853 17 1 -0.2121 1.8498 8.6725 18 6 2.0401 -0.7213 -1.2492 19 7 1.6515 0.0374 -2.4456 20 6 2.0755 1.4567 -2.3368 21 6 2.0778 1.9398 -3.8089 22 6 2.6031 0.7054 -4.5772 23 6 2.3242 -0.4931 -3.6512 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 0.6528 0.1793 2.4752 30 1 1.6920 -1.6245 3.7300 31 1 3.2126 -0.7037 3.6401 32 1 2.1301 -0.2521 5.7887 33 1 2.0628 1.2151 4.7832 34 1 0.1630 0.5089 7.0291 35 1 0.0957 1.9756 6.0230 36 1 -4.2555 1.9172 7.8052 37 1 3.1264 -0.7995 -1.2055 38 1 1.6055 -1.7198 -1.2951 39 1 1.3597 2.0278 -1.7456 40 1 3.0746 1.5280 -1.9071 41 1 2.7507 2.7880 -3.9355 42 1 1.0688 2.1950 -4.1328 43 1 3.6734 0.8009 -4.7601 44 1 2.0664 0.5890 -5.5186 45 1 3.2622 -0.9730 -3.3722 46 1 1.6750 -1.2106 -4.1532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385268748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:27 Heat of formation + Delta-G solvation = -55.607937 kcal Electronic energy + Delta-G solvation = -20779.066649 eV Core-core repulsion = 17703.047334 eV Total energy + Delta-G solvation = -3076.019316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.44335 -37.56235 -36.41297 -33.95623 -32.58142 -31.06264 -29.22012 -28.75206 -27.27700 -26.26491 -24.08896 -21.90521 -21.70783 -21.39738 -21.01208 -19.51768 -16.86511 -16.52154 -16.35883 -15.94830 -15.46029 -15.16696 -14.76588 -14.47332 -14.33218 -13.86826 -13.59366 -13.21963 -13.07585 -12.84165 -12.50329 -12.32281 -12.13462 -11.88818 -11.77650 -11.62233 -11.51573 -11.38541 -11.07308 -10.90829 -10.85757 -10.75073 -10.67957 -10.56400 -10.33684 -9.86059 -9.18250 -8.84775 -8.61888 -8.46634 -8.22241 -6.11288 -4.10303 3.25582 3.32357 3.33950 3.71788 4.26252 4.36048 4.42355 4.50014 4.67500 4.70296 4.87540 4.98964 5.01595 5.08148 5.20332 5.23455 5.29491 5.41509 5.48224 5.50099 5.53385 5.57794 5.59606 5.66402 5.72264 5.77611 5.81531 5.88805 5.91713 5.96399 6.08411 6.13894 6.21324 6.33331 6.44152 6.62210 6.69293 6.82502 7.00897 7.21632 7.59282 7.65965 8.01729 8.66664 8.99455 9.48083 11.01731 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.029226 B = 0.002826 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.806865 B = 9905.130453 C =10309.560224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.080 0.920 4 C 0.064 3.936 5 N -0.689 5.689 6 C 0.066 3.934 7 C 0.058 3.942 8 O -0.384 6.384 9 C 0.171 3.829 10 C -0.519 4.519 11 H 0.082 0.918 12 C 0.072 3.928 13 N -0.895 5.895 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.053 3.947 19 N -0.514 5.514 20 C 0.033 3.967 21 C -0.125 4.125 22 C -0.131 4.131 23 C 0.034 3.966 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.357 0.643 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.002 0.998 35 H -0.001 1.001 36 H 0.266 0.734 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.735 -2.615 -20.077 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.066 4.066 5 N -0.323 5.323 6 C -0.063 4.063 7 C -0.020 4.020 8 O -0.303 6.303 9 C 0.096 3.904 10 C -0.557 4.557 11 H 0.100 0.900 12 C -0.130 4.130 13 N -0.534 5.534 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.075 4.075 19 N -0.238 5.238 20 C -0.095 4.095 21 C -0.163 4.163 22 C -0.169 4.169 23 C -0.094 4.094 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.178 0.822 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.405 -2.287 -20.163 25.477 hybrid contribution 0.885 -0.125 1.169 1.472 sum 16.289 -2.412 -18.993 25.138 Atomic orbital electron populations 1.21774 0.94154 1.01819 1.02349 1.21216 0.97140 1.00234 0.92293 0.90144 1.21923 0.99784 0.94842 0.90068 1.60497 1.21878 1.49110 1.00785 1.21920 0.99248 0.95891 0.89290 1.22386 0.84771 0.99063 0.95808 1.87844 1.17457 1.74458 1.50573 1.20576 0.95814 0.89902 0.84141 1.20889 0.88272 1.33405 1.13096 0.90022 1.24769 0.94782 0.96007 0.97443 1.69876 1.05507 1.43616 1.34391 0.86842 0.80207 0.80890 0.81748 1.19889 1.20812 1.19138 1.22327 0.97585 0.97900 0.89708 1.64776 1.54501 1.02241 1.02269 1.23261 0.99401 0.89895 0.96918 1.22495 1.01832 0.97204 0.94802 1.22394 1.00896 0.94741 0.98904 1.22874 0.97288 0.97389 0.91805 0.93167 0.92204 0.91706 0.95362 0.91752 0.82151 0.94665 0.90720 0.94028 0.93427 0.98066 0.98291 0.92370 0.94855 0.90669 0.89543 0.93741 0.91176 0.90690 0.91716 0.91094 0.93988 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.85 37.16 0.33 -1.42 16 2 C -0.09 -0.99 2.28 -90.62 -0.21 -1.20 16 3 H 0.08 0.95 6.52 -51.93 -0.34 0.61 16 4 C 0.06 0.76 5.14 -3.83 -0.02 0.74 16 5 N -0.69 -10.18 6.50 -113.78 -0.74 -10.92 16 6 C 0.07 0.98 6.11 -3.82 -0.02 0.95 16 7 C 0.06 1.03 6.28 37.16 0.23 1.26 16 8 O -0.38 -8.91 9.85 -35.23 -0.35 -9.26 16 9 C 0.17 4.38 4.76 36.01 0.17 4.55 16 10 C -0.52 -15.50 9.99 -34.44 -0.34 -15.85 16 11 H 0.08 2.66 8.06 -52.48 -0.42 2.24 16 12 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 13 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 14 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 18 C 0.05 0.52 4.42 -3.82 -0.02 0.50 16 19 N -0.51 -4.99 4.85 -230.46 -1.12 -6.11 16 20 C 0.03 0.30 5.09 -1.90 -0.01 0.29 16 21 C -0.13 -0.94 7.06 -24.87 -0.18 -1.12 16 22 C -0.13 -0.91 6.93 -25.37 -0.18 -1.09 16 23 C 0.03 0.28 6.70 -2.75 -0.02 0.26 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.82 6.68 -51.93 -0.35 0.47 16 26 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.36 5.98 6.54 -39.29 -0.26 5.72 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 35 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 16 36 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.03 0.31 7.81 -51.93 -0.41 -0.09 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.84 7.56 -51.93 -0.39 0.45 16 40 H 0.04 0.40 8.01 -51.93 -0.42 -0.01 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.04 0.33 7.57 -51.93 -0.39 -0.07 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -31.06 357.86 -9.87 -40.92 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.80 Total: 0.14 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.35 Total: -10.08 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -1.08 Total: -44.01 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.35 Total: -9.26 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.06 -9.87 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385268748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.685 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds