Wall clock time and date at job start Mon Mar 30 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46892 * 109.47486 * 295.00155 * 4 2 1 6 6 C 1.46903 * 111.00235 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47219 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47135 * 64.99661 * 7 6 5 9 9 C 1.42896 * 114.00143 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47510 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99414 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00545 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00199 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99555 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47034 * 90.00001 * 14 12 10 16 16 H 1.48503 * 109.47043 * 209.99586 * 14 12 10 17 17 H 1.48503 * 109.47412 * 329.99528 * 14 12 10 18 18 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 19 19 N 1.46901 * 109.46818 * 65.00620 * 18 2 1 20 20 C 1.48528 * 111.00412 * 52.59954 * 19 18 2 21 21 C 1.54932 * 103.22764 * 159.72006 * 20 19 18 22 22 C 1.54593 * 102.92718 * 322.58899 * 21 20 19 23 23 C 1.47901 * 110.99850 * 170.00033 * 19 18 2 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 28 28 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 29 29 H 1.00902 * 111.00150 * 56.04186 * 5 4 2 30 30 H 1.08991 * 109.46891 * 299.99685 * 6 5 4 31 31 H 1.09001 * 109.47244 * 59.99987 * 6 5 4 32 32 H 1.08997 * 109.47390 * 185.00282 * 7 6 5 33 33 H 1.09004 * 109.47097 * 305.00370 * 7 6 5 34 34 H 1.09000 * 109.47002 * 300.00217 * 9 8 7 35 35 H 1.08997 * 109.47191 * 60.00586 * 9 8 7 36 36 H 0.96995 * 119.99504 * 180.02562 * 13 12 10 37 37 H 1.09002 * 109.47069 * 184.99942 * 18 2 1 38 38 H 1.08991 * 109.47625 * 305.00262 * 18 2 1 39 39 H 1.09000 * 110.66772 * 278.16041 * 20 19 18 40 40 H 1.08998 * 110.67010 * 41.28861 * 20 19 18 41 41 H 1.09007 * 110.72548 * 204.22509 * 21 20 19 42 42 H 1.09006 * 110.72623 * 80.94805 * 21 20 19 43 43 H 1.09003 * 110.30885 * 263.04757 * 22 21 20 44 44 H 1.08991 * 110.31468 * 140.86889 * 22 21 20 45 45 H 1.09002 * 109.91776 * 333.50131 * 23 19 18 46 46 H 1.08998 * 109.91738 * 94.60624 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1257 -0.6266 3.6672 7 6 1.7033 0.1915 4.8892 8 8 0.2779 0.1956 4.9902 9 6 -0.2238 0.9367 6.1042 10 6 -1.7294 0.8731 6.1130 11 1 -2.2510 0.3214 5.3449 12 6 -2.4411 1.5182 7.1022 13 7 -3.7550 1.4630 7.1095 14 14 -1.5388 2.4718 8.4310 15 1 -1.3536 3.8782 7.9919 16 1 -2.3334 2.4454 9.6853 17 1 -0.2121 1.8498 8.6725 18 6 2.0401 -0.7213 -1.2492 19 7 1.6515 0.0374 -2.4456 20 6 2.0755 1.4567 -2.3368 21 6 2.0778 1.9398 -3.8089 22 6 2.6031 0.7054 -4.5772 23 6 2.3242 -0.4931 -3.6512 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 0.6528 0.1793 2.4752 30 1 1.6920 -1.6245 3.7300 31 1 3.2126 -0.7037 3.6401 32 1 2.1301 -0.2521 5.7887 33 1 2.0628 1.2151 4.7832 34 1 0.1630 0.5089 7.0291 35 1 0.0957 1.9756 6.0230 36 1 -4.2555 1.9172 7.8052 37 1 3.1264 -0.7995 -1.2055 38 1 1.6055 -1.7198 -1.2951 39 1 1.3597 2.0278 -1.7456 40 1 3.0746 1.5280 -1.9071 41 1 2.7507 2.7880 -3.9355 42 1 1.0688 2.1950 -4.1328 43 1 3.6734 0.8009 -4.7601 44 1 2.0664 0.5890 -5.5186 45 1 3.2622 -0.9730 -3.3722 46 1 1.6750 -1.2106 -4.1532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385268748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:26 Heat of formation + Delta-G solvation = -77.756082 kcal Electronic energy + Delta-G solvation = -20780.027065 eV Core-core repulsion = 17703.047334 eV Total energy + Delta-G solvation = -3076.979731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18578 -39.00377 -37.65282 -35.19317 -34.60978 -31.96802 -30.55810 -29.73520 -28.89988 -27.21803 -25.04771 -24.00282 -22.76274 -22.39547 -21.65109 -20.39315 -19.05611 -17.68609 -17.17482 -17.08401 -16.91057 -16.41462 -16.31020 -15.69239 -15.32009 -15.11201 -14.82603 -14.46195 -14.19163 -14.04387 -13.88020 -13.43060 -13.18275 -13.12722 -13.06168 -12.72363 -12.54214 -12.50665 -12.24505 -12.20613 -12.03042 -11.83532 -11.71921 -11.55389 -11.47761 -11.38481 -11.33378 -10.92969 -10.35983 -9.38537 -9.31894 -8.37873 -6.45791 1.33161 1.36164 1.46946 2.28993 2.94607 2.94940 3.09530 3.31719 3.75613 3.80202 3.93460 4.06317 4.12595 4.14629 4.24507 4.37102 4.37772 4.47435 4.53815 4.59733 4.63406 4.67784 4.69617 4.75739 4.77089 4.83597 4.91081 4.93212 4.98401 4.99768 5.01834 5.08168 5.11611 5.21911 5.31507 5.37352 5.43186 5.43297 5.92467 5.98830 6.06250 6.16685 6.37099 6.58057 6.73747 7.18691 8.79219 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.029226 B = 0.002826 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.806865 B = 9905.130453 C =10309.560224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 H 0.074 0.926 4 C 0.067 3.933 5 N -0.698 5.698 6 C 0.071 3.929 7 C 0.050 3.950 8 O -0.407 6.407 9 C 0.182 3.818 10 C -0.545 4.545 11 H 0.030 0.970 12 C 0.012 3.988 13 N -0.942 5.942 14 Si 0.956 3.044 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.245 1.245 18 C 0.060 3.940 19 N -0.529 5.529 20 C 0.032 3.968 21 C -0.124 4.124 22 C -0.128 4.128 23 C 0.032 3.968 24 H 0.047 0.953 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.082 0.918 29 H 0.342 0.658 30 H 0.029 0.971 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.273 0.727 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.494 -2.106 -19.933 27.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 H 0.093 0.907 4 C -0.063 4.063 5 N -0.330 5.330 6 C -0.058 4.058 7 C -0.027 4.027 8 O -0.327 6.327 9 C 0.106 3.894 10 C -0.583 4.583 11 H 0.048 0.952 12 C -0.186 4.186 13 N -0.581 5.581 14 Si 0.777 3.223 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.169 1.169 18 C -0.068 4.068 19 N -0.254 5.254 20 C -0.096 4.096 21 C -0.162 4.162 22 C -0.166 4.166 23 C -0.096 4.096 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.161 0.839 30 H 0.047 0.953 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.065 0.935 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.191 -1.796 -20.047 27.130 hybrid contribution -0.022 -0.347 1.021 1.079 sum 18.170 -2.143 -19.025 26.395 Atomic orbital electron populations 1.21697 0.95363 1.01251 1.01183 1.21112 0.95931 1.00061 0.92862 0.90738 1.21975 1.00727 0.94428 0.89157 1.60568 1.20735 1.49897 1.01819 1.21957 1.00964 0.94800 0.88115 1.22721 0.81729 1.00224 0.98054 1.87811 1.21044 1.74152 1.49704 1.20286 0.92972 0.90793 0.85368 1.21163 0.91012 1.33628 1.12478 0.95173 1.25850 0.95664 0.96857 1.00225 1.70033 1.07650 1.44694 1.35757 0.85598 0.79488 0.79399 0.77788 1.18446 1.19803 1.16891 1.22224 0.97989 0.97564 0.89067 1.64756 1.55263 1.02619 1.02730 1.23246 0.98954 0.89567 0.97840 1.22496 1.01966 0.97952 0.93758 1.22395 1.01677 0.93706 0.98781 1.22931 0.97387 0.97924 0.91345 0.93404 0.94321 0.91804 0.95455 0.90005 0.83903 0.95288 0.87434 0.92302 0.92917 0.97050 0.97257 0.91794 0.93907 0.90711 0.90830 0.93658 0.89965 0.91200 0.90623 0.90351 0.93451 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.85 71.98 0.64 -2.82 16 2 C -0.08 -1.75 2.28 -10.79 -0.02 -1.77 16 3 H 0.07 1.72 6.52 -2.39 -0.02 1.71 16 4 C 0.07 1.51 5.14 86.30 0.44 1.96 16 5 N -0.70 -20.15 6.50 -513.89 -3.34 -23.49 16 6 C 0.07 1.98 6.11 86.30 0.53 2.50 16 7 C 0.05 1.69 6.28 71.98 0.45 2.14 16 8 O -0.41 -18.94 9.85 -148.98 -1.47 -20.40 16 9 C 0.18 9.21 4.76 71.24 0.34 9.55 16 10 C -0.55 -33.54 9.99 25.60 0.26 -33.29 16 11 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 12 C 0.01 0.72 5.47 84.65 0.46 1.18 16 13 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 14 Si 0.96 43.75 27.47 68.60 1.88 45.64 16 15 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 18 C 0.06 1.10 4.42 86.30 0.38 1.49 16 19 N -0.53 -9.80 4.85 -883.04 -4.28 -14.08 16 20 C 0.03 0.55 5.09 86.65 0.44 0.99 16 21 C -0.12 -1.71 7.06 31.80 0.22 -1.48 16 22 C -0.13 -1.54 6.93 31.47 0.22 -1.32 16 23 C 0.03 0.47 6.70 86.45 0.58 1.05 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 1.12 6.68 -2.39 -0.02 1.11 16 26 H 0.06 1.59 7.75 -2.39 -0.02 1.57 16 27 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.34 11.71 6.54 -89.69 -0.59 11.12 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 35 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.04 0.71 7.81 -2.39 -0.02 0.69 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.44 7.56 -2.39 -0.02 1.42 16 40 H 0.05 0.77 8.01 -2.39 -0.02 0.75 16 41 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.05 0.65 7.57 -2.39 -0.02 0.63 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.43 357.86 -1.70 -70.12 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.27 Total: 21.53 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 4.94 Total: -19.83 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -7.32 Total: -97.05 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.47 Total: -20.40 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -68.43 -1.70 -70.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385268748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.633 kcal (2) G-P(sol) polarization free energy of solvation -68.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds