Wall clock time and date at job start Mon Mar 30 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46893 * 109.47251 * 2 1 4 4 C 1.46902 * 111.00068 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47402 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.50411 * 55.07478 * 5 4 3 7 7 C 1.53121 * 109.50086 * 295.00392 * 5 4 3 8 8 C 1.53119 * 109.15938 * 182.36482 * 7 5 4 9 9 C 1.53039 * 109.27893 * 57.65020 * 8 7 5 10 10 N 1.46843 * 109.52217 * 300.82098 * 9 8 7 11 11 C 1.46906 * 110.99886 * 185.84207 * 10 9 8 12 12 C 1.52998 * 109.47215 * 66.04437 * 11 10 9 13 13 O 1.42897 * 109.46795 * 65.00306 * 12 11 10 14 14 C 1.42905 * 113.99899 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47179 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.46844 * 111.19890 * 61.74204 * 10 9 8 24 24 H 1.09000 * 109.47305 * 59.99558 * 1 2 3 25 25 H 1.08998 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46704 * 299.99559 * 1 2 3 27 27 H 1.09001 * 109.46704 * 240.00440 * 2 1 3 28 28 H 1.09000 * 109.47305 * 120.00441 * 2 1 3 29 29 H 1.00901 * 110.99887 * 56.05347 * 3 2 1 30 30 H 1.08998 * 109.46977 * 60.00631 * 4 3 2 31 31 H 1.08998 * 109.47204 * 300.00016 * 4 3 2 32 32 H 1.08998 * 109.52540 * 62.45612 * 7 5 4 33 33 H 1.08997 * 109.52155 * 302.26562 * 7 5 4 34 34 H 1.09011 * 109.50305 * 297.71086 * 8 7 5 35 35 H 1.09000 * 109.50314 * 177.59465 * 8 7 5 36 36 H 1.09006 * 109.45788 * 180.80905 * 9 8 7 37 37 H 1.08995 * 109.46470 * 60.83975 * 9 8 7 38 38 H 1.09000 * 109.46758 * 306.04661 * 11 10 9 39 39 H 1.08993 * 109.47047 * 186.05237 * 11 10 9 40 40 H 1.08995 * 109.47274 * 305.00344 * 12 11 10 41 41 H 1.09002 * 109.46559 * 184.99809 * 12 11 10 42 42 H 1.09007 * 109.46810 * 59.99780 * 14 13 12 43 43 H 1.09003 * 109.46936 * 300.00543 * 14 13 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.46027 * 58.27503 * 23 10 9 46 46 H 1.09000 * 109.46500 * 178.23643 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 3.9596 2.8797 0.0000 6 1 3.5125 3.4066 0.8430 7 6 3.5362 3.5547 -1.3075 8 6 4.0625 4.9925 -1.3242 9 6 5.5845 4.9752 -1.1651 10 7 5.9383 4.3201 0.1006 11 6 7.3828 4.4080 0.3531 12 6 7.7731 5.8701 0.5784 13 8 7.1509 6.3507 1.7716 14 6 7.4525 7.7140 2.0758 15 6 6.7483 8.1127 3.3471 16 1 6.1324 7.3965 3.8707 17 6 6.8903 9.3918 3.8419 18 7 7.6407 10.2638 3.2046 19 14 6.0168 9.8862 5.4173 20 1 6.3303 11.3029 5.7335 21 1 4.5507 9.7308 5.2401 22 1 6.4756 9.0177 6.5311 23 6 5.4845 2.9237 0.1207 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6443 1.9012 0.7814 30 1 3.8647 0.9204 -0.8909 31 1 3.8655 0.9200 0.8891 32 1 2.4484 3.5641 -1.3769 33 1 3.9513 3.0050 -2.1522 34 1 3.6171 5.5527 -0.5019 35 1 3.8009 5.4648 -2.2710 36 1 5.9610 5.9982 -1.1622 37 1 6.0302 4.4268 -1.9949 38 1 7.9264 4.0151 -0.5062 39 1 7.6329 3.8244 1.2390 40 1 7.4430 6.4692 -0.2702 41 1 8.8560 5.9459 0.6775 42 1 7.1160 8.3517 1.2583 43 1 8.5287 7.8277 2.2060 44 1 7.7403 11.1638 3.5524 45 1 5.9307 2.3848 -0.7152 46 1 5.7884 2.4565 1.0574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395322629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:25 Heat of formation + Delta-G solvation = -61.603189 kcal Electronic energy + Delta-G solvation = -21149.500791 eV Core-core repulsion = 18073.221501 eV Total energy + Delta-G solvation = -3076.279289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27610 -37.07253 -36.20907 -33.78305 -32.56617 -31.83086 -29.72110 -28.62890 -26.68331 -25.08854 -23.58301 -22.30035 -22.20564 -22.13777 -20.40198 -19.57610 -16.37452 -16.25032 -15.86354 -15.57552 -15.46715 -14.73590 -14.59855 -14.29196 -14.21524 -13.98175 -13.91546 -13.50857 -12.99460 -12.62906 -12.46608 -12.39945 -11.98784 -11.87476 -11.78165 -11.47509 -11.40554 -11.11974 -10.94746 -10.79306 -10.70892 -10.59188 -10.50174 -10.16889 -10.11164 -9.83231 -9.02726 -8.71992 -8.63244 -8.07287 -7.96383 -6.04444 -4.05175 3.36663 3.38721 3.43196 3.81947 4.18749 4.40912 4.72443 4.80100 4.88229 4.94707 4.99481 5.04330 5.20175 5.26589 5.31870 5.35494 5.43448 5.50494 5.52780 5.58400 5.60104 5.68560 5.70548 5.71353 5.85382 5.88663 5.92824 5.97392 6.08945 6.17835 6.20622 6.25454 6.36303 6.43416 6.55752 6.79970 7.15461 7.18179 7.36704 7.38478 7.51460 7.87288 8.24363 8.70146 9.09622 9.59351 11.07270 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.003481 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.917886 B = 8042.508544 C = 8889.513409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.689 5.689 4 C 0.065 3.935 5 C -0.082 4.082 6 H 0.081 0.919 7 C -0.102 4.102 8 C -0.119 4.119 9 C 0.054 3.946 10 N -0.522 5.522 11 C 0.062 3.938 12 C 0.066 3.934 13 O -0.379 6.379 14 C 0.195 3.805 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.287 1.287 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.065 3.935 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.342 0.658 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.024 0.976 38 H 0.036 0.964 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.002 0.998 43 H 0.001 0.999 44 H 0.263 0.737 45 H 0.026 0.974 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 -18.749 -10.023 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.320 5.320 4 C -0.064 4.064 5 C -0.102 4.102 6 H 0.099 0.901 7 C -0.140 4.140 8 C -0.157 4.157 9 C -0.073 4.073 10 N -0.247 5.247 11 C -0.065 4.065 12 C -0.012 4.012 13 O -0.299 6.299 14 C 0.120 3.880 15 C -0.548 4.548 16 H 0.084 0.916 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.735 3.265 20 H -0.212 1.212 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.064 4.064 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.160 0.840 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.019 0.981 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.854 -18.358 -10.199 22.791 hybrid contribution 0.537 -0.114 0.876 1.033 sum -8.317 -18.472 -9.324 22.301 Atomic orbital electron populations 1.21769 0.94998 1.01572 1.02503 1.21903 0.95667 0.89728 1.00279 1.60470 1.08079 1.13237 1.50254 1.21958 0.87452 0.96775 1.00252 1.21168 0.94906 0.94511 0.99574 0.90078 1.21488 1.01230 0.95115 0.96160 1.21609 0.95043 0.97154 1.01878 1.22140 0.96286 0.99750 0.89171 1.61730 1.14840 1.14512 1.33574 1.22113 0.87176 0.97293 0.99955 1.22264 0.95559 0.93262 0.90097 1.87947 1.71491 1.30626 1.39789 1.20160 0.95115 0.76923 0.95790 1.21030 1.29300 0.96851 1.07618 0.91602 1.24950 0.95636 0.96064 0.97948 1.69961 1.39126 1.05175 1.39792 0.86406 0.80030 0.77223 0.82866 1.21245 1.20007 1.20079 1.22017 0.94801 0.89286 1.00282 0.91805 0.92362 0.92772 0.91266 0.95534 0.83977 0.91305 0.95241 0.90973 0.93045 0.90736 0.91941 0.90322 0.95785 0.94586 0.90243 0.94563 0.94434 0.97974 0.98098 0.92716 0.95600 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.17 37.16 0.38 -0.65 16 2 C 0.05 0.42 6.40 -3.83 -0.02 0.39 16 3 N -0.69 -6.30 6.01 -113.78 -0.68 -6.99 16 4 C 0.07 0.63 5.08 -3.82 -0.02 0.61 16 5 C -0.08 -0.94 2.49 -90.54 -0.23 -1.17 16 6 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 7 C -0.10 -1.16 5.14 -26.61 -0.14 -1.30 16 8 C -0.12 -1.53 6.09 -26.65 -0.16 -1.70 16 9 C 0.05 0.77 5.30 -3.84 -0.02 0.75 16 10 N -0.52 -8.13 4.60 -234.68 -1.08 -9.21 16 11 C 0.06 0.98 5.34 -3.82 -0.02 0.96 16 12 C 0.07 1.27 6.00 37.16 0.22 1.50 16 13 O -0.38 -9.47 10.27 -35.23 -0.36 -9.83 16 14 C 0.19 5.50 5.69 36.00 0.20 5.70 16 15 C -0.51 -15.40 9.43 -34.44 -0.32 -15.73 16 16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 19 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 C 0.06 0.82 4.74 -3.84 -0.02 0.80 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.34 3.06 8.73 -39.29 -0.34 2.72 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.81 7.83 -51.93 -0.41 0.41 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.24 6.13 -51.93 -0.32 0.92 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.08 1.24 7.98 -51.93 -0.41 0.83 16 40 H 0.04 0.68 6.23 -51.93 -0.32 0.36 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.00 0.07 8.14 -51.92 -0.42 -0.35 16 43 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -31.67 361.82 -10.15 -41.82 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -8.95 Total: -3.45 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.24 Total: -8.31 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -1.03 Total: -42.95 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.36 Total: -9.83 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.67 -10.15 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395322629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.780 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds