Wall clock time and date at job start Mon Mar 30 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46893 * 109.47251 * 2 1 4 4 C 1.46902 * 111.00068 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47402 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.50411 * 55.07478 * 5 4 3 7 7 C 1.53121 * 109.50086 * 295.00392 * 5 4 3 8 8 C 1.53119 * 109.15938 * 182.36482 * 7 5 4 9 9 C 1.53039 * 109.27893 * 57.65020 * 8 7 5 10 10 N 1.46843 * 109.52217 * 300.82098 * 9 8 7 11 11 C 1.46906 * 110.99886 * 185.84207 * 10 9 8 12 12 C 1.52998 * 109.47215 * 66.04437 * 11 10 9 13 13 O 1.42897 * 109.46795 * 65.00306 * 12 11 10 14 14 C 1.42905 * 113.99899 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47179 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.46844 * 111.19890 * 61.74204 * 10 9 8 24 24 H 1.09000 * 109.47305 * 59.99558 * 1 2 3 25 25 H 1.08998 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46704 * 299.99559 * 1 2 3 27 27 H 1.09001 * 109.46704 * 240.00440 * 2 1 3 28 28 H 1.09000 * 109.47305 * 120.00441 * 2 1 3 29 29 H 1.00901 * 110.99887 * 56.05347 * 3 2 1 30 30 H 1.08998 * 109.46977 * 60.00631 * 4 3 2 31 31 H 1.08998 * 109.47204 * 300.00016 * 4 3 2 32 32 H 1.08998 * 109.52540 * 62.45612 * 7 5 4 33 33 H 1.08997 * 109.52155 * 302.26562 * 7 5 4 34 34 H 1.09011 * 109.50305 * 297.71086 * 8 7 5 35 35 H 1.09000 * 109.50314 * 177.59465 * 8 7 5 36 36 H 1.09006 * 109.45788 * 180.80905 * 9 8 7 37 37 H 1.08995 * 109.46470 * 60.83975 * 9 8 7 38 38 H 1.09000 * 109.46758 * 306.04661 * 11 10 9 39 39 H 1.08993 * 109.47047 * 186.05237 * 11 10 9 40 40 H 1.08995 * 109.47274 * 305.00344 * 12 11 10 41 41 H 1.09002 * 109.46559 * 184.99809 * 12 11 10 42 42 H 1.09007 * 109.46810 * 59.99780 * 14 13 12 43 43 H 1.09003 * 109.46936 * 300.00543 * 14 13 12 44 44 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.46027 * 58.27503 * 23 10 9 46 46 H 1.09000 * 109.46500 * 178.23643 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 3.9596 2.8797 0.0000 6 1 3.5125 3.4066 0.8430 7 6 3.5362 3.5547 -1.3075 8 6 4.0625 4.9925 -1.3242 9 6 5.5845 4.9752 -1.1651 10 7 5.9383 4.3201 0.1006 11 6 7.3828 4.4080 0.3531 12 6 7.7731 5.8701 0.5784 13 8 7.1509 6.3507 1.7716 14 6 7.4525 7.7140 2.0758 15 6 6.7483 8.1127 3.3471 16 1 6.1324 7.3965 3.8707 17 6 6.8903 9.3918 3.8419 18 7 7.6407 10.2638 3.2046 19 14 6.0168 9.8862 5.4173 20 1 6.3303 11.3029 5.7335 21 1 4.5507 9.7308 5.2401 22 1 6.4756 9.0177 6.5311 23 6 5.4845 2.9237 0.1207 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6443 1.9012 0.7814 30 1 3.8647 0.9204 -0.8909 31 1 3.8655 0.9200 0.8891 32 1 2.4484 3.5641 -1.3769 33 1 3.9513 3.0050 -2.1522 34 1 3.6171 5.5527 -0.5019 35 1 3.8009 5.4648 -2.2710 36 1 5.9610 5.9982 -1.1622 37 1 6.0302 4.4268 -1.9949 38 1 7.9264 4.0151 -0.5062 39 1 7.6329 3.8244 1.2390 40 1 7.4430 6.4692 -0.2702 41 1 8.8560 5.9459 0.6775 42 1 7.1160 8.3517 1.2583 43 1 8.5287 7.8277 2.2060 44 1 7.7403 11.1638 3.5524 45 1 5.9307 2.3848 -0.7152 46 1 5.7884 2.4565 1.0574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395322629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:25 Heat of formation + Delta-G solvation = -83.529509 kcal Electronic energy + Delta-G solvation = -21150.451587 eV Core-core repulsion = 18073.221501 eV Total energy + Delta-G solvation = -3077.230086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35256 -38.53623 -37.38729 -35.14732 -34.52555 -32.77632 -30.82089 -29.93751 -28.65840 -26.02364 -24.77096 -24.38011 -23.28811 -22.87722 -21.59557 -20.57418 -18.60266 -17.48203 -17.35390 -16.75712 -16.51473 -16.25687 -15.84352 -15.58377 -15.48415 -15.14686 -14.95477 -14.66306 -14.49634 -13.82446 -13.57617 -13.57076 -13.22592 -13.14183 -12.96344 -12.74470 -12.58972 -12.48042 -12.30193 -12.24327 -12.02915 -11.96409 -11.86764 -11.50850 -11.28478 -11.16673 -11.04296 -10.82917 -10.16150 -9.33746 -9.10604 -8.31036 -6.43077 1.39555 1.44901 1.53201 2.35694 2.85704 3.02367 3.22640 3.35730 3.84319 3.92837 3.99264 4.15756 4.20195 4.29767 4.34107 4.36726 4.43331 4.48727 4.58235 4.62059 4.63071 4.63593 4.69576 4.75225 4.82741 4.85813 4.94712 4.98979 5.01136 5.06138 5.13685 5.17939 5.19905 5.24956 5.34928 5.46056 5.55019 5.56410 5.98452 6.09454 6.20090 6.29984 6.45221 6.58129 6.87352 7.29081 8.81248 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.003481 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.917886 B = 8042.508544 C = 8889.513409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.696 5.696 4 C 0.075 3.925 5 C -0.077 4.077 6 H 0.058 0.942 7 C -0.092 4.092 8 C -0.117 4.117 9 C 0.055 3.945 10 N -0.552 5.552 11 C 0.071 3.929 12 C 0.056 3.944 13 O -0.394 6.394 14 C 0.210 3.790 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.983 3.017 20 H -0.274 1.274 21 H -0.266 1.266 22 H -0.265 1.265 23 C 0.067 3.933 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.028 0.972 29 H 0.342 0.658 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.046 0.954 42 H -0.020 1.020 43 H -0.017 1.017 44 H 0.271 0.729 45 H 0.043 0.957 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 -20.100 -10.023 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 N -0.327 5.327 4 C -0.055 4.055 5 C -0.096 4.096 6 H 0.077 0.923 7 C -0.130 4.130 8 C -0.155 4.155 9 C -0.072 4.072 10 N -0.277 5.277 11 C -0.057 4.057 12 C -0.021 4.021 13 O -0.314 6.314 14 C 0.135 3.865 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.806 3.194 20 H -0.199 1.199 21 H -0.191 1.191 22 H -0.189 1.189 23 C -0.061 4.061 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.160 0.840 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.064 0.936 42 H -0.002 1.002 43 H 0.001 0.999 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.639 -19.734 -10.220 24.223 hybrid contribution 0.814 0.286 0.795 1.173 sum -8.825 -19.447 -9.425 23.343 Atomic orbital electron populations 1.21741 0.94292 1.02294 1.02150 1.21944 0.96246 0.88908 1.00465 1.60488 1.07750 1.14155 1.50341 1.21833 0.87821 0.95224 1.00637 1.21091 0.94128 0.95632 0.98777 0.92319 1.21403 1.01237 0.93929 0.96425 1.21592 0.94139 0.98193 1.01556 1.22112 0.97077 0.98628 0.89395 1.61675 1.14762 1.16602 1.34644 1.22019 0.88030 0.94354 1.01266 1.22622 0.95891 0.95653 0.87933 1.87901 1.72350 1.28633 1.42494 1.19769 0.93604 0.78431 0.94683 1.21348 1.30451 0.97741 1.08815 0.92224 1.25978 0.95999 0.95576 1.01748 1.70069 1.39814 1.05714 1.41518 0.85235 0.78871 0.77399 0.77910 1.19867 1.19084 1.18947 1.22042 0.95439 0.87687 1.00925 0.92380 0.91125 0.92870 0.91001 0.95342 0.84038 0.90571 0.95123 0.90826 0.91861 0.93408 0.90456 0.92665 0.93827 0.91352 0.90279 0.94478 0.93561 1.00209 0.99909 0.92062 0.93847 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.17 71.98 0.73 -1.05 16 2 C 0.05 0.74 6.40 86.31 0.55 1.30 16 3 N -0.70 -11.75 6.01 -513.89 -3.09 -14.83 16 4 C 0.07 1.30 5.08 86.30 0.44 1.74 16 5 C -0.08 -1.68 2.49 -10.74 -0.03 -1.71 16 6 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 7 C -0.09 -1.96 5.14 30.67 0.16 -1.80 16 8 C -0.12 -2.96 6.09 30.65 0.19 -2.78 16 9 C 0.06 1.55 5.30 86.33 0.46 2.00 16 10 N -0.55 -16.84 4.60 -896.39 -4.13 -20.96 16 11 C 0.07 2.15 5.34 86.30 0.46 2.61 16 12 C 0.06 2.19 6.00 71.98 0.43 2.62 16 13 O -0.39 -20.27 10.27 -148.98 -1.53 -21.80 16 14 C 0.21 12.34 5.69 71.23 0.41 12.75 16 15 C -0.55 -33.75 9.43 25.60 0.24 -33.51 16 16 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 17 C 0.01 0.31 5.46 84.66 0.46 0.77 16 18 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 19 Si 0.98 45.53 29.54 68.60 2.03 47.55 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 C 0.07 1.59 4.74 86.32 0.41 2.00 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.34 5.82 8.73 -89.69 -0.78 5.03 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 1.56 7.83 -2.39 -0.02 1.54 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.77 6.13 -2.38 -0.01 1.76 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 39 H 0.08 2.40 7.98 -2.39 -0.02 2.38 16 40 H 0.04 1.43 6.23 -2.39 -0.01 1.42 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 43 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 1.67 8.01 -2.39 -0.02 1.65 16 Total: -1.00 -68.42 361.82 -1.39 -69.81 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.13 Total: 12.39 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 4.91 Total: -15.04 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -6.93 Total: -92.92 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.53 Total: -21.80 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.42 -1.39 -69.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395322629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.716 kcal (2) G-P(sol) polarization free energy of solvation -68.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds