Wall clock time and date at job start Mon Mar 30 2020 05:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00292 * 2 1 4 4 C 1.53004 * 109.47231 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.46874 * 64.01420 * 4 3 2 6 6 C 1.46897 * 111.00388 * 71.68567 * 5 4 3 7 7 C 1.50704 * 109.46843 * 65.12717 * 6 5 4 8 8 H 1.08004 * 120.00160 * 3.75049 * 7 6 5 9 9 C 1.37881 * 119.99988 * 183.75772 * 7 6 5 10 10 N 1.31514 * 119.99633 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99846 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47090 * 90.00183 * 11 9 7 13 13 H 1.48497 * 109.46809 * 209.99210 * 11 9 7 14 14 H 1.48492 * 109.47463 * 329.99614 * 11 9 7 15 15 C 1.46901 * 110.99788 * 195.64090 * 5 4 3 16 16 H 1.08995 * 109.47543 * 303.32196 * 15 5 4 17 17 C 1.53003 * 109.47067 * 63.32455 * 15 5 4 18 18 C 1.53000 * 109.47136 * 183.32023 * 15 5 4 19 19 C 1.53006 * 109.47170 * 175.71181 * 18 15 5 20 20 H 1.09000 * 110.59179 * 59.36602 * 19 18 15 21 21 C 1.55096 * 110.68445 * 182.47065 * 19 18 15 22 22 C 1.54593 * 102.84319 * 155.78457 * 21 19 18 23 23 C 1.53990 * 105.22989 * 338.14981 * 22 21 19 24 24 N 1.47908 * 107.05227 * 358.72881 * 23 22 21 25 25 H 1.08994 * 109.47037 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46726 * 299.99483 * 1 2 3 27 27 H 1.08999 * 109.46720 * 59.99700 * 1 2 3 28 28 H 1.09004 * 109.46875 * 60.00445 * 3 2 1 29 29 H 1.08995 * 109.47268 * 300.00429 * 3 2 1 30 30 H 1.09004 * 109.47270 * 304.00997 * 4 3 2 31 31 H 1.08999 * 109.46807 * 184.01008 * 4 3 2 32 32 H 1.08997 * 109.47052 * 185.12332 * 6 5 4 33 33 H 1.09001 * 109.47219 * 305.12786 * 6 5 4 34 34 H 0.97004 * 119.99434 * 180.02562 * 10 9 7 35 35 H 1.08995 * 109.47522 * 59.99894 * 17 15 5 36 36 H 1.09007 * 109.47216 * 180.02562 * 17 15 5 37 37 H 1.09004 * 109.46787 * 299.99646 * 17 15 5 38 38 H 1.08998 * 109.46935 * 55.71916 * 18 15 5 39 39 H 1.08995 * 109.47363 * 295.71730 * 18 15 5 40 40 H 1.09000 * 110.70890 * 37.47558 * 21 19 18 41 41 H 1.09003 * 110.81185 * 274.13753 * 21 19 18 42 42 H 1.09001 * 110.30958 * 219.18166 * 22 21 19 43 43 H 1.09002 * 110.31080 * 97.12052 * 22 21 19 44 44 H 1.08997 * 109.91637 * 118.07752 * 23 22 21 45 45 H 1.08991 * 109.92270 * 239.37362 * 23 22 21 46 46 H 1.00902 * 110.99772 * 145.84375 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9762 0.5407 -1.2440 6 6 3.8169 1.4458 -2.3900 7 6 4.7385 2.6272 -2.2289 8 1 5.4218 2.6691 -1.3935 9 6 4.7092 3.6548 -3.1478 10 7 3.8773 3.6036 -4.1651 11 14 5.8511 5.1195 -2.9476 12 1 7.1276 4.8528 -3.6580 13 1 5.2091 6.3295 -3.5211 14 1 6.1243 5.3407 -1.5049 15 6 5.3641 0.0727 -1.1318 16 1 6.0099 0.9102 -0.8681 17 6 5.4538 -1.0019 -0.0463 18 6 5.8136 -0.5161 -2.4705 19 6 7.2908 -0.9056 -2.3861 20 1 7.4492 -1.6396 -1.5960 21 6 7.7928 -1.4492 -3.7492 22 6 9.3153 -1.1893 -3.6832 23 6 9.4902 -0.0739 -2.6360 24 7 8.1375 0.2943 -2.1644 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8901 29 1 1.6887 1.8464 -0.8899 30 1 3.8520 0.5830 0.8528 31 1 3.9786 2.1778 0.0725 32 1 4.0640 0.9150 -3.3093 33 1 2.7850 1.7938 -2.4375 34 1 3.8570 4.3263 -4.8118 35 1 4.8081 -1.8395 -0.3100 36 1 6.4837 -1.3489 0.0373 37 1 5.1336 -0.5824 0.9075 38 1 5.6779 0.2257 -3.2575 39 1 5.2172 -1.3997 -2.6974 40 1 7.3426 -0.8966 -4.5739 41 1 7.5872 -2.5158 -3.8403 42 1 9.6851 -0.8583 -4.6537 43 1 9.8397 -2.0910 -3.3668 44 1 10.0879 -0.4391 -1.8009 45 1 9.9729 0.7907 -3.0914 46 1 8.1523 0.5512 -1.1888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395541711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:07 Heat of formation + Delta-G solvation = -63.600724 kcal Electronic energy + Delta-G solvation = -22504.321116 eV Core-core repulsion = 19427.955207 eV Total energy + Delta-G solvation = -3076.365909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16928 -39.03527 -37.90221 -34.76305 -33.56271 -31.10378 -30.62694 -30.28307 -27.71349 -27.02581 -26.22338 -24.57368 -22.93858 -21.73806 -21.20911 -20.18430 -18.15560 -17.81941 -17.35296 -17.11365 -16.65950 -16.38284 -15.94110 -15.52454 -15.40470 -15.04574 -14.57314 -14.36183 -13.84905 -13.60845 -13.39911 -13.05339 -12.97780 -12.90906 -12.83962 -12.69745 -12.59649 -12.40207 -12.30162 -12.15237 -11.94517 -11.91357 -11.71876 -11.47161 -11.38757 -11.21203 -10.95177 -10.49160 -10.39757 -9.24777 -8.81450 -8.03491 -6.20803 1.37191 1.40438 1.47580 2.43335 3.05656 3.20781 3.35060 3.40453 3.81702 3.94029 4.18701 4.19654 4.30630 4.31266 4.39476 4.48377 4.59307 4.61704 4.65002 4.66583 4.69097 4.76572 4.85687 4.87848 4.94096 4.97913 5.02774 5.04553 5.09003 5.20218 5.23953 5.28687 5.33931 5.38710 5.51635 5.58310 5.65768 5.87993 6.09106 6.19831 6.35582 6.49127 6.54339 6.75078 7.00403 7.49079 8.96987 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.007654 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.719992 B = 3657.520423 C = 5360.122027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.077 3.923 4 C 0.059 3.941 5 N -0.531 5.531 6 C 0.205 3.795 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.014 3.986 10 N -0.930 5.930 11 Si 0.948 3.052 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.093 3.907 16 H 0.029 0.971 17 C -0.134 4.134 18 C -0.087 4.087 19 C 0.080 3.920 20 H 0.066 0.934 21 C -0.121 4.121 22 C -0.124 4.124 23 C 0.039 3.961 24 N -0.687 5.687 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.005 0.995 33 H -0.001 1.001 34 H 0.260 0.740 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -10.139 7.819 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.000 4.000 4 C -0.069 4.069 5 N -0.255 5.255 6 C 0.078 3.922 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.185 4.185 10 N -0.571 5.571 11 Si 0.775 3.225 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.192 1.192 15 C -0.015 4.015 16 H 0.047 0.953 17 C -0.191 4.191 18 C -0.126 4.126 19 C -0.029 4.029 20 H 0.083 0.917 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.090 4.090 24 N -0.317 5.317 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.023 0.977 33 H 0.017 0.983 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.692 -10.245 7.009 13.270 hybrid contribution 0.814 1.698 0.290 1.905 sum 5.505 -8.547 7.298 12.515 Atomic orbital electron populations 1.22858 0.80714 1.03427 0.99989 1.87912 1.20312 1.27991 1.95329 1.22460 0.93942 0.84433 0.99184 1.22034 0.93386 0.97962 0.93547 1.62469 1.21178 1.38510 1.03310 1.19380 0.94454 0.89147 0.89192 1.21852 1.20412 1.04944 1.09439 0.92721 1.25660 0.96783 1.00894 0.95118 1.70076 1.38676 1.33933 1.14383 0.85704 0.79173 0.79256 0.78380 1.20721 1.21251 1.19193 1.21371 0.88704 0.95919 0.95501 0.95285 1.21872 1.01451 0.98285 0.97498 1.21432 0.94308 0.99466 0.97359 1.22587 0.92507 0.90683 0.97159 0.91666 1.22544 0.95842 1.01082 0.96494 1.22374 0.95804 0.98612 0.99440 1.22660 0.90440 0.97976 0.97937 1.62943 1.08905 1.35055 1.24826 0.88336 0.92943 0.95144 0.91820 0.95621 0.89713 0.94254 0.97717 0.98296 0.93149 0.92534 0.91349 0.92723 0.93858 0.92376 0.93208 0.89452 0.91189 0.89479 0.92695 0.91757 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -14.26 10.64 -148.98 -1.58 -15.85 16 3 C 0.08 2.85 6.07 71.98 0.44 3.28 16 4 C 0.06 2.32 5.10 86.31 0.44 2.76 16 5 N -0.53 -23.17 4.47 -875.52 -3.91 -27.08 16 6 C 0.20 10.91 4.46 85.56 0.38 11.30 16 7 C -0.53 -29.25 7.31 25.60 0.19 -29.07 16 8 H 0.05 3.01 5.95 -2.91 -0.02 2.99 16 9 C 0.01 0.79 5.46 84.66 0.46 1.25 16 10 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 11 Si 0.95 45.62 29.54 68.60 2.03 47.65 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 15 C 0.09 3.55 1.59 44.92 0.07 3.62 16 16 H 0.03 1.22 5.68 -2.39 -0.01 1.21 16 17 C -0.13 -3.97 8.85 71.98 0.64 -3.33 16 18 C -0.09 -3.31 4.12 30.60 0.13 -3.19 16 19 C 0.08 2.41 2.94 45.32 0.13 2.55 16 20 H 0.07 1.69 6.59 -2.39 -0.02 1.67 16 21 C -0.12 -3.30 6.52 31.85 0.21 -3.09 16 22 C -0.12 -2.81 6.92 31.47 0.22 -2.59 16 23 C 0.04 0.98 7.52 86.44 0.65 1.63 16 24 N -0.69 -21.91 6.79 -480.09 -3.26 -25.17 16 25 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.03 1.10 6.52 -2.39 -0.02 1.09 16 30 H 0.08 2.92 5.80 -2.38 -0.01 2.91 16 31 H 0.04 1.69 6.63 -2.39 -0.02 1.67 16 32 H 0.00 0.28 6.18 -2.39 -0.01 0.27 16 33 H 0.00 -0.06 6.45 -2.39 -0.02 -0.08 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.69 6.55 -2.38 -0.02 1.67 16 37 H 0.05 1.55 6.19 -2.38 -0.01 1.54 16 38 H 0.04 2.07 5.95 -2.39 -0.01 2.05 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.05 1.61 8.05 -2.39 -0.02 1.59 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 46 H 0.34 10.13 8.29 -89.69 -0.74 9.39 16 Total: -1.00 -65.94 346.61 -1.04 -66.98 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.21 Total: 22.72 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 5.20 Total: -12.91 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -6.89 Total: -108.59 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -1.58 Total: -15.85 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -65.94 -1.04 -66.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395541711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.381 kcal (2) G-P(sol) polarization free energy of solvation -65.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds