Wall clock time and date at job start Mon Mar 30 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.47728 * 2 1 4 4 C 1.46901 * 111.00047 * 287.23558 * 3 2 1 5 5 C 1.53004 * 109.47265 * 159.59977 * 4 3 2 6 6 O 1.42902 * 109.46993 * 66.60468 * 5 4 3 7 7 C 1.42904 * 113.99845 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46860 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00045 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99842 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99987 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00034 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47425 * 89.99836 * 12 10 8 14 14 H 1.48500 * 109.47140 * 209.99994 * 12 10 8 15 15 H 1.48499 * 109.47126 * 329.99848 * 12 10 8 16 16 C 1.46902 * 111.00322 * 163.28147 * 3 2 1 17 17 H 1.08996 * 110.27191 * 179.30799 * 16 3 2 18 18 C 1.54591 * 110.30838 * 57.10852 * 16 3 2 19 19 C 1.54940 * 102.91935 * 219.12543 * 18 16 3 20 20 N 1.48528 * 103.22496 * 37.41766 * 19 18 16 21 21 C 1.46902 * 110.99891 * 200.27412 * 20 19 18 22 22 C 1.53001 * 109.47059 * 307.39976 * 21 20 19 23 23 C 1.47899 * 105.82260 * 320.78786 * 20 19 18 24 24 H 1.09001 * 109.46560 * 306.64131 * 1 2 3 25 25 H 1.08998 * 109.46720 * 66.63392 * 1 2 3 26 26 H 1.08995 * 109.47578 * 186.63831 * 1 2 3 27 27 H 1.08998 * 109.46799 * 239.99837 * 2 1 3 28 28 H 1.09004 * 109.46920 * 120.00528 * 2 1 3 29 29 H 1.08995 * 109.47019 * 279.60090 * 4 3 2 30 30 H 1.09005 * 109.47038 * 39.60116 * 4 3 2 31 31 H 1.08993 * 109.47325 * 186.60831 * 5 4 3 32 32 H 1.09000 * 109.47183 * 306.60714 * 5 4 3 33 33 H 1.08995 * 109.46902 * 300.00758 * 7 6 5 34 34 H 1.09000 * 109.46973 * 60.00482 * 7 6 5 35 35 H 0.97001 * 120.00318 * 180.02562 * 11 10 8 36 36 H 1.09002 * 110.72567 * 337.48732 * 18 16 3 37 37 H 1.08999 * 110.72317 * 100.76862 * 18 16 3 38 38 H 1.08998 * 110.66835 * 278.97889 * 19 18 16 39 39 H 1.09006 * 110.66130 * 155.85166 * 19 18 16 40 40 H 1.09002 * 109.47121 * 67.39486 * 21 20 19 41 41 H 1.09000 * 109.47284 * 187.39282 * 21 20 19 42 42 H 1.09004 * 109.46854 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.46809 * 299.99207 * 22 21 20 44 44 H 1.08997 * 109.47239 * 59.99847 * 22 21 20 45 45 H 1.08999 * 109.92029 * 265.98188 * 23 20 19 46 46 H 1.09002 * 109.91884 * 144.68446 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8122 2.0167 -1.3098 5 6 1.8436 3.5383 -1.1529 6 8 3.1584 3.9511 -0.7745 7 6 3.2970 5.3628 -0.6013 8 6 4.7155 5.6834 -0.2059 9 1 5.4386 4.8886 -0.0973 10 6 5.0897 6.9913 0.0182 11 7 4.2090 7.9591 -0.1136 12 14 6.8477 7.3887 0.5090 13 1 7.6607 7.6260 -0.7109 14 1 6.8613 8.6072 1.3577 15 1 7.4188 6.2488 1.2704 16 6 3.4336 1.4433 0.3945 17 1 3.7878 2.4740 0.3787 18 6 4.2899 0.5648 -0.5462 19 6 5.3135 -0.0822 0.4205 20 7 4.5107 -0.3384 1.6436 21 6 5.3780 -0.4987 2.8184 22 6 6.4438 -1.5565 2.5250 23 6 3.6229 0.8346 1.7963 24 1 -0.3632 0.6133 0.8246 25 1 -0.3633 0.4076 -0.9434 26 1 -0.3634 -1.0207 0.1188 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.6027 1.7055 -1.9927 30 1 0.8452 1.7127 -1.7107 31 1 1.5739 4.0069 -2.0993 32 1 1.1328 3.8389 -0.3831 33 1 3.0576 5.8688 -1.5365 34 1 2.6163 5.7016 0.1797 35 1 4.4724 8.8794 0.0437 36 1 3.6767 -0.1981 -1.0258 37 1 4.7971 1.1781 -1.2910 38 1 6.1303 0.6073 0.6337 39 1 5.6949 -1.0163 0.0079 40 1 5.8618 0.4514 3.0452 41 1 4.7784 -0.8140 3.6724 42 1 7.0876 -1.6751 3.3966 43 1 5.9599 -2.5066 2.2983 44 1 7.0433 -1.2411 1.6711 45 1 4.0848 1.5661 2.4595 46 1 2.6594 0.5213 2.1983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710020759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:36 Heat of formation + Delta-G solvation = -39.240657 kcal Electronic energy + Delta-G solvation = -22262.532892 eV Core-core repulsion = 19187.223315 eV Total energy + Delta-G solvation = -3075.309577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70244 -37.23437 -35.95914 -32.77848 -32.57475 -30.79726 -29.16302 -28.90627 -27.09174 -25.81768 -23.17243 -22.54312 -22.36248 -21.50751 -20.41193 -18.92163 -16.46129 -16.27077 -16.06850 -15.51554 -15.20042 -14.86053 -14.64684 -14.43416 -14.13908 -13.69507 -13.20996 -12.85814 -12.83324 -12.59384 -12.30652 -11.97549 -11.93591 -11.60823 -11.47584 -11.34828 -11.20372 -11.17426 -10.96051 -10.91021 -10.80634 -10.72747 -10.64633 -10.34107 -10.25753 -9.82469 -9.08119 -8.78258 -8.32700 -8.13058 -7.90491 -6.11145 -4.12775 3.28476 3.33868 3.38223 4.03888 4.22236 4.34006 4.82408 4.94337 4.96660 5.10215 5.14782 5.25475 5.27360 5.35075 5.38763 5.44610 5.53126 5.63817 5.65959 5.75438 5.79236 5.81629 5.87591 5.91202 5.97322 6.03952 6.08282 6.13900 6.16033 6.18259 6.21999 6.29033 6.36716 6.47655 6.71924 7.03810 7.12684 7.16187 7.44729 7.48360 7.52176 7.78197 8.16484 8.59840 9.00656 9.52074 11.00355 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.005767 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.473023 B = 4854.007503 C = 6415.716836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 N -0.522 5.522 4 C 0.058 3.942 5 C 0.068 3.932 6 O -0.393 6.393 7 C 0.195 3.805 8 C -0.512 4.512 9 H 0.064 0.936 10 C 0.057 3.943 11 N -0.897 5.897 12 Si 0.905 3.095 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.070 3.930 17 H 0.131 0.869 18 C -0.155 4.155 19 C 0.039 3.961 20 N -0.520 5.520 21 C 0.040 3.960 22 C -0.151 4.151 23 C 0.039 3.961 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -17.531 1.567 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.246 5.246 4 C -0.070 4.070 5 C -0.010 4.010 6 O -0.313 6.313 7 C 0.121 3.879 8 C -0.551 4.551 9 H 0.082 0.918 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.732 3.268 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.039 4.039 17 H 0.149 0.851 18 C -0.194 4.194 19 C -0.089 4.089 20 N -0.245 5.245 21 C -0.088 4.088 22 C -0.208 4.208 23 C -0.089 4.089 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.838 -17.671 1.935 18.002 hybrid contribution 1.592 0.896 -0.304 1.852 sum -1.246 -16.775 1.631 16.900 Atomic orbital electron populations 1.21795 0.95627 1.00924 1.02058 1.22154 0.95149 0.89974 1.01260 1.62204 1.17929 1.16154 1.28264 1.22173 1.00512 0.94326 0.90013 1.22273 0.87667 0.93028 0.98064 1.87754 1.27136 1.27006 1.89393 1.20166 0.97261 0.75374 0.95086 1.21023 0.94992 0.92544 1.46508 0.91805 1.24927 0.98065 0.95897 0.95520 1.69960 1.34158 1.00024 1.49520 0.86390 0.84004 0.77879 0.78522 1.20508 1.21073 1.19741 1.23006 0.86513 1.02279 0.92098 0.85114 1.23133 0.98333 0.99311 0.98658 1.23127 0.95531 0.99333 0.90923 1.64873 1.18082 1.38861 1.02685 1.22251 0.94494 0.98240 0.93826 1.21834 0.98139 0.99319 1.01535 1.22994 0.97812 0.90689 0.97431 0.91908 0.93219 0.92903 0.95242 0.89832 0.93950 0.90495 0.94460 0.93672 0.97943 0.97706 0.92685 0.91263 0.90737 0.93543 0.90669 0.94553 0.90907 0.92476 0.92093 0.92603 0.93249 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.88 37.16 0.37 -1.24 16 2 C 0.04 0.54 4.62 -3.83 -0.02 0.52 16 3 N -0.52 -7.89 4.36 -225.03 -0.98 -8.87 16 4 C 0.06 0.88 5.26 -3.82 -0.02 0.86 16 5 C 0.07 1.26 6.25 37.16 0.23 1.49 16 6 O -0.39 -9.09 7.47 -35.23 -0.26 -9.35 16 7 C 0.20 5.29 5.69 36.01 0.20 5.49 16 8 C -0.51 -14.83 9.43 -34.44 -0.32 -15.16 16 9 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 12 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 16 C 0.07 1.13 2.89 -66.36 -0.19 0.93 16 17 H 0.13 2.66 5.35 -51.93 -0.28 2.38 16 18 C -0.15 -2.24 5.23 -24.87 -0.13 -2.37 16 19 C 0.04 0.52 5.10 -1.90 -0.01 0.51 16 20 N -0.52 -6.87 5.40 -230.45 -1.24 -8.12 16 21 C 0.04 0.47 5.75 -3.82 -0.02 0.45 16 22 C -0.15 -1.49 9.57 37.16 0.36 -1.13 16 23 C 0.04 0.57 5.57 -2.75 -0.02 0.55 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.53 6.79 -51.93 -0.35 0.18 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.03 0.37 6.56 -51.93 -0.34 0.03 16 28 H 0.08 1.09 5.97 -51.93 -0.31 0.78 16 29 H 0.04 0.66 6.97 -51.93 -0.36 0.30 16 30 H 0.08 1.00 6.39 -51.93 -0.33 0.67 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 0.95 5.90 -51.93 -0.31 0.65 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.65 8.00 -51.93 -0.42 0.24 16 39 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 40 H 0.04 0.46 7.81 -51.93 -0.41 0.05 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.56 6.79 -51.93 -0.35 0.21 16 45 H 0.05 0.77 7.57 -51.93 -0.39 0.38 16 46 H 0.08 1.23 6.54 -51.93 -0.34 0.89 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -29.49 347.94 -9.56 -39.05 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -8.36 Total: -1.07 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 0.33 Total: -7.55 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -1.49 Total: -43.06 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.26 Total: -9.35 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.49 -9.56 -39.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710020759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.190 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds