Wall clock time and date at job start Mon Mar 30 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.47728 * 2 1 4 4 C 1.46901 * 111.00047 * 287.23558 * 3 2 1 5 5 C 1.53004 * 109.47265 * 159.59977 * 4 3 2 6 6 O 1.42902 * 109.46993 * 66.60468 * 5 4 3 7 7 C 1.42904 * 113.99845 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46860 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00045 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99842 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99987 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00034 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47425 * 89.99836 * 12 10 8 14 14 H 1.48500 * 109.47140 * 209.99994 * 12 10 8 15 15 H 1.48499 * 109.47126 * 329.99848 * 12 10 8 16 16 C 1.46902 * 111.00322 * 163.28147 * 3 2 1 17 17 H 1.08996 * 110.27191 * 179.30799 * 16 3 2 18 18 C 1.54591 * 110.30838 * 57.10852 * 16 3 2 19 19 C 1.54940 * 102.91935 * 219.12543 * 18 16 3 20 20 N 1.48528 * 103.22496 * 37.41766 * 19 18 16 21 21 C 1.46902 * 110.99891 * 200.27412 * 20 19 18 22 22 C 1.53001 * 109.47059 * 307.39976 * 21 20 19 23 23 C 1.47899 * 105.82260 * 320.78786 * 20 19 18 24 24 H 1.09001 * 109.46560 * 306.64131 * 1 2 3 25 25 H 1.08998 * 109.46720 * 66.63392 * 1 2 3 26 26 H 1.08995 * 109.47578 * 186.63831 * 1 2 3 27 27 H 1.08998 * 109.46799 * 239.99837 * 2 1 3 28 28 H 1.09004 * 109.46920 * 120.00528 * 2 1 3 29 29 H 1.08995 * 109.47019 * 279.60090 * 4 3 2 30 30 H 1.09005 * 109.47038 * 39.60116 * 4 3 2 31 31 H 1.08993 * 109.47325 * 186.60831 * 5 4 3 32 32 H 1.09000 * 109.47183 * 306.60714 * 5 4 3 33 33 H 1.08995 * 109.46902 * 300.00758 * 7 6 5 34 34 H 1.09000 * 109.46973 * 60.00482 * 7 6 5 35 35 H 0.97001 * 120.00318 * 180.02562 * 11 10 8 36 36 H 1.09002 * 110.72567 * 337.48732 * 18 16 3 37 37 H 1.08999 * 110.72317 * 100.76862 * 18 16 3 38 38 H 1.08998 * 110.66835 * 278.97889 * 19 18 16 39 39 H 1.09006 * 110.66130 * 155.85166 * 19 18 16 40 40 H 1.09002 * 109.47121 * 67.39486 * 21 20 19 41 41 H 1.09000 * 109.47284 * 187.39282 * 21 20 19 42 42 H 1.09004 * 109.46854 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.46809 * 299.99207 * 22 21 20 44 44 H 1.08997 * 109.47239 * 59.99847 * 22 21 20 45 45 H 1.08999 * 109.92029 * 265.98188 * 23 20 19 46 46 H 1.09002 * 109.91884 * 144.68446 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8122 2.0167 -1.3098 5 6 1.8436 3.5383 -1.1529 6 8 3.1584 3.9511 -0.7745 7 6 3.2970 5.3628 -0.6013 8 6 4.7155 5.6834 -0.2059 9 1 5.4386 4.8886 -0.0973 10 6 5.0897 6.9913 0.0182 11 7 4.2090 7.9591 -0.1136 12 14 6.8477 7.3887 0.5090 13 1 7.6607 7.6260 -0.7109 14 1 6.8613 8.6072 1.3577 15 1 7.4188 6.2488 1.2704 16 6 3.4336 1.4433 0.3945 17 1 3.7878 2.4740 0.3787 18 6 4.2899 0.5648 -0.5462 19 6 5.3135 -0.0822 0.4205 20 7 4.5107 -0.3384 1.6436 21 6 5.3780 -0.4987 2.8184 22 6 6.4438 -1.5565 2.5250 23 6 3.6229 0.8346 1.7963 24 1 -0.3632 0.6133 0.8246 25 1 -0.3633 0.4076 -0.9434 26 1 -0.3634 -1.0207 0.1188 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.6027 1.7055 -1.9927 30 1 0.8452 1.7127 -1.7107 31 1 1.5739 4.0069 -2.0993 32 1 1.1328 3.8389 -0.3831 33 1 3.0576 5.8688 -1.5365 34 1 2.6163 5.7016 0.1797 35 1 4.4724 8.8794 0.0437 36 1 3.6767 -0.1981 -1.0258 37 1 4.7971 1.1781 -1.2910 38 1 6.1303 0.6073 0.6337 39 1 5.6949 -1.0163 0.0079 40 1 5.8618 0.4514 3.0452 41 1 4.7784 -0.8140 3.6724 42 1 7.0876 -1.6751 3.3966 43 1 5.9599 -2.5066 2.2983 44 1 7.0433 -1.2411 1.6711 45 1 4.0848 1.5661 2.4595 46 1 2.6594 0.5213 2.1983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710020759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:36 Heat of formation + Delta-G solvation = -59.331120 kcal Electronic energy + Delta-G solvation = -22263.404080 eV Core-core repulsion = 19187.223315 eV Total energy + Delta-G solvation = -3076.180765 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89007 -38.73747 -37.41149 -34.92453 -33.62322 -32.05692 -30.30580 -30.16930 -29.02297 -27.11353 -24.51674 -24.20740 -23.66307 -22.83613 -21.47938 -20.15019 -18.60246 -17.60939 -17.45304 -17.02892 -16.58668 -16.42243 -15.83811 -15.79283 -15.48068 -15.19256 -14.74639 -14.07277 -14.01078 -13.73749 -13.63870 -13.33220 -13.25841 -12.99369 -12.81992 -12.76345 -12.52466 -12.42065 -12.38469 -12.33945 -12.20928 -11.96499 -11.91691 -11.82896 -11.46602 -11.42649 -11.15297 -10.82613 -10.14140 -9.43320 -9.10816 -8.32508 -6.44235 1.37134 1.39657 1.51193 2.32517 2.90380 3.01456 3.09142 3.24406 3.68898 3.84120 4.01407 4.20820 4.22417 4.28420 4.31524 4.35891 4.44541 4.51889 4.56197 4.60747 4.65190 4.69245 4.72979 4.80271 4.85604 4.90849 4.94438 4.95980 4.97120 5.11363 5.13131 5.13407 5.19845 5.22350 5.27286 5.43025 5.45771 5.53887 5.88181 5.96997 6.07293 6.24087 6.34476 6.55295 6.84033 7.27632 8.79907 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.005767 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.473023 B = 4854.007503 C = 6415.716836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 N -0.533 5.533 4 C 0.068 3.932 5 C 0.059 3.941 6 O -0.396 6.396 7 C 0.211 3.789 8 C -0.541 4.541 9 H 0.059 0.941 10 C 0.007 3.993 11 N -0.930 5.930 12 Si 0.978 3.022 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.266 1.266 16 C 0.070 3.930 17 H 0.085 0.915 18 C -0.147 4.147 19 C 0.043 3.957 20 N -0.514 5.514 21 C 0.036 3.964 22 C -0.144 4.144 23 C 0.046 3.954 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.039 0.961 33 H -0.017 1.017 34 H -0.019 1.019 35 H 0.270 0.730 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.034 0.966 39 H 0.096 0.904 40 H 0.023 0.977 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.031 0.969 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -19.449 1.692 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 N -0.257 5.257 4 C -0.060 4.060 5 C -0.018 4.018 6 O -0.316 6.316 7 C 0.136 3.864 8 C -0.578 4.578 9 H 0.078 0.922 10 C -0.191 4.191 11 N -0.570 5.570 12 Si 0.801 3.199 13 H -0.193 1.193 14 H -0.200 1.200 15 H -0.191 1.191 16 C -0.040 4.040 17 H 0.103 0.897 18 C -0.187 4.187 19 C -0.085 4.085 20 N -0.239 5.239 21 C -0.092 4.092 22 C -0.202 4.202 23 C -0.082 4.082 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.000 1.000 34 H -0.002 1.002 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.114 0.886 40 H 0.041 0.959 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.289 -19.614 2.055 19.853 hybrid contribution 1.327 1.466 -0.344 2.007 sum -0.962 -18.147 1.711 18.253 Atomic orbital electron populations 1.21764 0.94082 1.02119 1.01941 1.22177 0.96275 0.88121 1.01430 1.62166 1.17287 1.18106 1.28103 1.22113 1.02070 0.91568 0.90270 1.22584 0.85460 0.95741 0.98043 1.87791 1.29863 1.24382 1.89564 1.19756 0.96203 0.77420 0.93058 1.21320 0.95742 0.93120 1.47642 0.92245 1.25909 1.02943 0.95412 0.94838 1.70072 1.36515 1.00612 1.49783 0.85255 0.78037 0.77942 0.78627 1.19255 1.19975 1.19053 1.22757 0.87536 1.00089 0.93590 0.89715 1.23038 0.98364 0.99033 0.98222 1.23125 0.94772 0.99866 0.90731 1.64926 1.18249 1.37449 1.03283 1.22357 0.94925 0.98386 0.93502 1.21790 0.97602 0.98657 1.02129 1.22864 0.98298 0.90836 0.96183 0.92855 0.92707 0.90850 0.94551 0.90026 0.94168 0.87426 0.93682 0.94276 0.99961 1.00165 0.92126 0.89961 0.92371 0.94802 0.88571 0.95855 0.89964 0.90972 0.91497 0.92912 0.95070 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.88 71.98 0.71 -2.03 16 2 C 0.05 1.09 4.62 86.30 0.40 1.49 16 3 N -0.53 -15.80 4.36 -865.86 -3.77 -19.58 16 4 C 0.07 2.01 5.26 86.30 0.45 2.47 16 5 C 0.06 2.24 6.25 71.98 0.45 2.69 16 6 O -0.40 -19.14 7.47 -148.98 -1.11 -20.25 16 7 C 0.21 11.96 5.69 71.24 0.41 12.37 16 8 C -0.54 -32.27 9.43 25.60 0.24 -32.03 16 9 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 10 C 0.01 0.43 5.46 84.65 0.46 0.89 16 11 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 12 Si 0.98 44.74 29.54 68.60 2.03 46.77 16 13 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 C 0.07 2.28 2.89 45.79 0.13 2.41 16 17 H 0.08 3.62 5.35 -2.39 -0.01 3.61 16 18 C -0.15 -4.19 5.23 31.80 0.17 -4.02 16 19 C 0.04 1.10 5.10 86.65 0.44 1.54 16 20 N -0.51 -13.03 5.40 -883.01 -4.76 -17.80 16 21 C 0.04 0.81 5.75 86.30 0.50 1.30 16 22 C -0.14 -2.54 9.57 71.98 0.69 -1.85 16 23 C 0.05 1.37 5.57 86.45 0.48 1.85 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 1.01 6.79 -2.39 -0.02 0.99 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 0.81 6.56 -2.39 -0.02 0.80 16 28 H 0.08 1.95 5.97 -2.38 -0.01 1.94 16 29 H 0.04 1.23 6.97 -2.39 -0.02 1.21 16 30 H 0.11 2.56 6.39 -2.38 -0.02 2.55 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.08 2.12 5.90 -2.39 -0.01 2.11 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.03 0.95 8.00 -2.39 -0.02 0.93 16 39 H 0.10 2.08 7.66 -2.38 -0.02 2.06 16 40 H 0.02 0.58 7.81 -2.39 -0.02 0.56 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.05 0.96 6.79 -2.39 -0.02 0.94 16 45 H 0.03 1.02 7.57 -2.39 -0.02 1.00 16 46 H 0.09 2.55 6.54 -2.39 -0.02 2.54 16 Total: -1.00 -64.66 347.94 -0.89 -65.54 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.92 Total: 14.44 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.53 Total: -12.91 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -8.25 Total: -93.59 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.11 Total: -20.25 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.66 -0.89 -65.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710020759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.213 kcal (2) G-P(sol) polarization free energy of solvation -64.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds