Wall clock time and date at job start Mon Mar 30 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47494 * 2 1 4 4 C 1.53002 * 109.47021 * 119.99849 * 2 1 3 5 5 N 1.46902 * 109.47021 * 296.70845 * 4 2 1 6 6 C 1.46896 * 111.00125 * 164.22448 * 5 4 2 7 7 C 1.46902 * 110.99723 * 288.17452 * 5 4 2 8 8 H 1.08997 * 109.47172 * 55.00208 * 7 5 4 9 9 C 1.52998 * 109.47360 * 295.00089 * 7 5 4 10 10 C 1.50705 * 109.46834 * 175.00006 * 7 5 4 11 11 H 1.08001 * 119.99894 * 0.02562 * 10 7 5 12 12 C 1.37873 * 119.99527 * 180.02562 * 10 7 5 13 13 N 1.31511 * 120.00563 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99734 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.47249 * 89.99798 * 14 12 10 16 16 H 1.48505 * 109.47474 * 210.00227 * 14 12 10 17 17 H 1.48504 * 109.47012 * 329.99793 * 14 12 10 18 18 C 1.52998 * 109.47204 * 239.99563 * 2 1 3 19 19 N 1.46907 * 109.46988 * 65.00506 * 18 2 1 20 20 C 1.47018 * 110.99766 * 46.32051 * 19 18 2 21 21 C 1.53098 * 109.25244 * 182.35477 * 20 19 18 22 22 O 1.43020 * 109.29225 * 303.21317 * 21 20 19 23 23 C 1.43012 * 113.73545 * 58.65133 * 22 21 20 24 24 C 1.47020 * 110.99799 * 169.99879 * 19 18 2 25 25 H 1.09003 * 109.46984 * 64.85776 * 1 2 3 26 26 H 1.08997 * 109.47545 * 184.85687 * 1 2 3 27 27 H 1.08998 * 109.47345 * 304.85595 * 1 2 3 28 28 H 1.09003 * 109.47227 * 56.70773 * 4 2 1 29 29 H 1.09007 * 109.47245 * 176.70981 * 4 2 1 30 30 H 1.09004 * 109.47495 * 54.39753 * 6 5 4 31 31 H 1.08996 * 109.47442 * 174.39974 * 6 5 4 32 32 H 1.09004 * 109.46984 * 294.40354 * 6 5 4 33 33 H 1.08999 * 109.47199 * 60.00093 * 9 7 5 34 34 H 1.09004 * 109.47211 * 180.02562 * 9 7 5 35 35 H 1.08997 * 109.47075 * 300.00178 * 9 7 5 36 36 H 0.97002 * 120.00029 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.47815 * 305.00122 * 18 2 1 38 38 H 1.09006 * 109.47160 * 185.00374 * 18 2 1 39 39 H 1.08993 * 109.47403 * 62.43766 * 20 19 18 40 40 H 1.09005 * 109.54079 * 302.30379 * 20 19 18 41 41 H 1.08994 * 109.50843 * 183.25792 * 21 20 19 42 42 H 1.08995 * 109.50800 * 63.17122 * 21 20 19 43 43 H 1.09002 * 109.51176 * 61.26786 * 23 22 21 44 44 H 1.09003 * 109.50411 * 181.35340 * 23 22 21 45 45 H 1.08999 * 109.50605 * 57.67374 * 24 19 18 46 46 H 1.09000 * 109.54077 * 297.56140 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6162 0.0157 2.4474 6 6 1.7515 -0.8147 3.6515 7 6 2.3670 1.2707 2.5863 8 1 2.2649 1.8581 1.6739 9 6 3.8448 0.9569 2.8282 10 6 1.8226 2.0552 3.7523 11 1 1.0014 1.6607 4.3323 12 6 2.3731 3.2765 4.0785 13 7 3.3727 3.7571 3.3720 14 14 1.6988 4.2486 5.5242 15 1 2.4293 3.8687 6.7600 16 1 1.8771 5.7009 5.2705 17 1 0.2540 3.9490 5.6913 18 6 2.0399 -0.7213 -1.2492 19 7 1.6514 0.0374 -2.4456 20 6 1.9365 1.4697 -2.2768 21 6 1.4636 2.2285 -3.5196 22 8 2.1001 1.6818 -4.6777 23 6 1.8423 0.2886 -4.8726 24 6 2.3201 -0.4900 -3.6441 25 1 -0.3633 0.4366 -0.9303 26 1 -0.3634 -1.0239 0.0870 27 1 -0.3634 0.5873 0.8433 28 1 1.6292 -1.7305 1.2793 29 1 3.1284 -0.7726 1.2203 30 1 2.7717 -1.1926 3.7196 31 1 1.5266 -0.2152 4.5335 32 1 1.0567 -1.6527 3.5949 33 1 4.2385 0.3895 1.9849 34 1 4.4018 1.8882 2.9318 35 1 3.9469 0.3695 3.7407 36 1 3.7602 4.6162 3.6017 37 1 1.6054 -1.7199 -1.2951 38 1 3.1263 -0.7996 -1.2055 39 1 3.0092 1.6140 -2.1485 40 1 1.4105 1.8452 -1.3990 41 1 1.7249 3.2823 -3.4240 42 1 0.3826 2.1291 -3.6173 43 1 0.7723 0.1320 -5.0094 44 1 2.3771 -0.0604 -5.7560 45 1 2.0739 -1.5451 -3.7635 46 1 3.3991 -0.3776 -3.5388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720623851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:36 Heat of formation + Delta-G solvation = -34.148016 kcal Electronic energy + Delta-G solvation = -22395.863021 eV Core-core repulsion = 19320.774278 eV Total energy + Delta-G solvation = -3075.088744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69031 -37.83626 -36.07815 -33.34620 -32.15786 -31.09814 -28.69726 -27.84821 -26.46297 -25.11255 -24.54392 -24.06524 -22.93017 -20.82270 -19.73753 -18.47901 -16.64565 -16.19863 -16.06137 -15.24927 -15.10316 -15.04224 -15.03988 -14.32370 -14.15881 -13.69145 -13.46255 -12.98517 -12.74190 -12.33152 -12.09723 -11.97626 -11.61423 -11.40995 -11.36786 -11.32011 -11.06967 -10.91306 -10.80616 -10.63332 -10.59222 -10.26301 -10.22171 -10.12108 -9.99258 -9.69691 -9.51299 -8.83221 -8.37312 -8.30018 -7.08325 -6.00752 -4.04010 3.30521 3.37506 3.41467 3.74793 3.90866 4.41958 4.79647 4.93286 5.02452 5.10291 5.18472 5.23699 5.31195 5.36020 5.51930 5.53875 5.58483 5.64266 5.74899 5.84667 5.87948 6.00182 6.03189 6.11493 6.18681 6.24425 6.36481 6.50061 6.61045 6.70461 6.80932 6.84960 6.89533 6.91317 7.04413 7.05156 7.13666 7.16032 7.51607 7.72737 7.85283 8.15842 8.40813 8.63232 9.02343 9.61069 11.06378 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.004754 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.655571 B = 5887.954154 C = 6578.350494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.090 4.090 3 H 0.080 0.920 4 C 0.058 3.942 5 N -0.532 5.532 6 C 0.036 3.964 7 C 0.211 3.789 8 H 0.040 0.960 9 C -0.173 4.173 10 C -0.499 4.499 11 H 0.062 0.938 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.062 3.938 19 N -0.531 5.531 20 C 0.009 3.991 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.017 3.983 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.027 0.973 30 H 0.011 0.989 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.007 0.993 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.259 0.741 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.042 0.958 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -8.005 -12.287 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.071 4.071 5 N -0.255 5.255 6 C -0.113 4.113 7 C 0.104 3.896 8 H 0.058 0.942 9 C -0.232 4.232 10 C -0.538 4.538 11 H 0.080 0.920 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.209 1.209 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.066 4.066 19 N -0.257 5.257 20 C -0.118 4.118 21 C -0.013 4.013 22 O -0.308 6.308 23 C -0.012 4.012 24 C -0.112 4.112 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.029 0.971 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.026 0.974 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.285 -7.665 -12.536 15.056 hybrid contribution 1.488 0.192 1.266 1.963 sum -1.797 -7.473 -11.270 13.641 Atomic orbital electron populations 1.21564 0.94115 1.01020 1.01475 1.21266 0.97446 1.00252 0.91938 0.90178 1.22034 0.97223 0.96382 0.91460 1.62293 1.56933 1.05705 1.00577 1.22204 0.97488 0.96431 0.95164 1.19293 0.87467 0.85309 0.97506 0.94246 1.22399 1.02187 1.01862 0.96730 1.21139 1.16620 1.02767 1.13229 0.91975 1.24915 0.95084 0.97458 0.96779 1.69883 1.24497 1.19295 1.39759 0.86561 0.79434 0.79155 0.82637 1.20892 1.21323 1.19837 1.22198 0.97650 0.97468 0.89308 1.62257 1.57671 1.02813 1.02919 1.22935 1.00329 0.88720 0.99855 1.22707 0.97089 0.97504 0.83962 1.87964 1.73571 1.23493 1.45754 1.22617 1.00561 0.81353 0.96666 1.22771 0.97044 0.99829 0.91532 0.93183 0.94075 0.91458 0.92722 0.95463 0.97058 0.90526 0.94100 0.97437 0.89470 0.95299 0.93068 0.90868 0.95175 0.93944 0.88044 0.88428 0.92327 0.92428 0.88871 0.89948 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.71 37.15 0.32 -1.64 16 2 C -0.09 -1.46 1.87 -90.62 -0.17 -1.63 16 3 H 0.08 1.50 4.36 -51.93 -0.23 1.27 16 4 C 0.06 1.04 4.25 -3.82 -0.02 1.02 16 5 N -0.53 -11.13 4.17 -236.28 -0.98 -12.11 16 6 C 0.04 0.70 8.66 60.06 0.52 1.22 16 7 C 0.21 5.15 2.23 -68.86 -0.15 5.00 16 8 H 0.04 1.06 6.47 -51.93 -0.34 0.72 16 9 C -0.17 -4.16 8.31 37.16 0.31 -3.85 16 10 C -0.50 -13.41 7.80 -34.44 -0.27 -13.68 16 11 H 0.06 1.68 6.81 -52.49 -0.36 1.32 16 12 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 13 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 14 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.06 0.86 4.67 -3.82 -0.02 0.84 16 19 N -0.53 -7.03 4.26 -234.29 -1.00 -8.03 16 20 C 0.01 0.13 4.80 -3.71 -0.02 0.11 16 21 C 0.06 0.80 7.01 37.21 0.26 1.06 16 22 O -0.39 -5.12 10.83 -35.23 -0.38 -5.51 16 23 C 0.07 0.69 7.01 37.21 0.26 0.95 16 24 C 0.02 0.19 5.63 -3.71 -0.02 0.17 16 25 H 0.05 0.75 7.29 -51.93 -0.38 0.37 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 28 H 0.05 0.89 8.00 -51.93 -0.42 0.47 16 29 H 0.03 0.51 5.98 -51.93 -0.31 0.20 16 30 H 0.01 0.21 6.83 -51.93 -0.35 -0.14 16 31 H 0.08 1.61 6.29 -51.93 -0.33 1.29 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.01 0.15 6.30 -51.93 -0.33 -0.18 16 34 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 35 H 0.03 0.68 6.61 -51.93 -0.34 0.33 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.53 5.56 -51.93 -0.29 1.24 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -28.16 339.89 -8.89 -37.05 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.17 Total: 0.83 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 0.91 Total: -8.94 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -1.35 Total: -44.71 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.38 Total: -5.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.16 -8.89 -37.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.903 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds