Wall clock time and date at job start Mon Mar 30 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47494 * 2 1 4 4 C 1.53002 * 109.47021 * 119.99849 * 2 1 3 5 5 N 1.46902 * 109.47021 * 296.70845 * 4 2 1 6 6 C 1.46896 * 111.00125 * 164.22448 * 5 4 2 7 7 C 1.46902 * 110.99723 * 288.17452 * 5 4 2 8 8 H 1.08997 * 109.47172 * 55.00208 * 7 5 4 9 9 C 1.52998 * 109.47360 * 295.00089 * 7 5 4 10 10 C 1.50705 * 109.46834 * 175.00006 * 7 5 4 11 11 H 1.08001 * 119.99894 * 0.02562 * 10 7 5 12 12 C 1.37873 * 119.99527 * 180.02562 * 10 7 5 13 13 N 1.31511 * 120.00563 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99734 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.47249 * 89.99798 * 14 12 10 16 16 H 1.48505 * 109.47474 * 210.00227 * 14 12 10 17 17 H 1.48504 * 109.47012 * 329.99793 * 14 12 10 18 18 C 1.52998 * 109.47204 * 239.99563 * 2 1 3 19 19 N 1.46907 * 109.46988 * 65.00506 * 18 2 1 20 20 C 1.47018 * 110.99766 * 46.32051 * 19 18 2 21 21 C 1.53098 * 109.25244 * 182.35477 * 20 19 18 22 22 O 1.43020 * 109.29225 * 303.21317 * 21 20 19 23 23 C 1.43012 * 113.73545 * 58.65133 * 22 21 20 24 24 C 1.47020 * 110.99799 * 169.99879 * 19 18 2 25 25 H 1.09003 * 109.46984 * 64.85776 * 1 2 3 26 26 H 1.08997 * 109.47545 * 184.85687 * 1 2 3 27 27 H 1.08998 * 109.47345 * 304.85595 * 1 2 3 28 28 H 1.09003 * 109.47227 * 56.70773 * 4 2 1 29 29 H 1.09007 * 109.47245 * 176.70981 * 4 2 1 30 30 H 1.09004 * 109.47495 * 54.39753 * 6 5 4 31 31 H 1.08996 * 109.47442 * 174.39974 * 6 5 4 32 32 H 1.09004 * 109.46984 * 294.40354 * 6 5 4 33 33 H 1.08999 * 109.47199 * 60.00093 * 9 7 5 34 34 H 1.09004 * 109.47211 * 180.02562 * 9 7 5 35 35 H 1.08997 * 109.47075 * 300.00178 * 9 7 5 36 36 H 0.97002 * 120.00029 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.47815 * 305.00122 * 18 2 1 38 38 H 1.09006 * 109.47160 * 185.00374 * 18 2 1 39 39 H 1.08993 * 109.47403 * 62.43766 * 20 19 18 40 40 H 1.09005 * 109.54079 * 302.30379 * 20 19 18 41 41 H 1.08994 * 109.50843 * 183.25792 * 21 20 19 42 42 H 1.08995 * 109.50800 * 63.17122 * 21 20 19 43 43 H 1.09002 * 109.51176 * 61.26786 * 23 22 21 44 44 H 1.09003 * 109.50411 * 181.35340 * 23 22 21 45 45 H 1.08999 * 109.50605 * 57.67374 * 24 19 18 46 46 H 1.09000 * 109.54077 * 297.56140 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6162 0.0157 2.4474 6 6 1.7515 -0.8147 3.6515 7 6 2.3670 1.2707 2.5863 8 1 2.2649 1.8581 1.6739 9 6 3.8448 0.9569 2.8282 10 6 1.8226 2.0552 3.7523 11 1 1.0014 1.6607 4.3323 12 6 2.3731 3.2765 4.0785 13 7 3.3727 3.7571 3.3720 14 14 1.6988 4.2486 5.5242 15 1 2.4293 3.8687 6.7600 16 1 1.8771 5.7009 5.2705 17 1 0.2540 3.9490 5.6913 18 6 2.0399 -0.7213 -1.2492 19 7 1.6514 0.0374 -2.4456 20 6 1.9365 1.4697 -2.2768 21 6 1.4636 2.2285 -3.5196 22 8 2.1001 1.6818 -4.6777 23 6 1.8423 0.2886 -4.8726 24 6 2.3201 -0.4900 -3.6441 25 1 -0.3633 0.4366 -0.9303 26 1 -0.3634 -1.0239 0.0870 27 1 -0.3634 0.5873 0.8433 28 1 1.6292 -1.7305 1.2793 29 1 3.1284 -0.7726 1.2203 30 1 2.7717 -1.1926 3.7196 31 1 1.5266 -0.2152 4.5335 32 1 1.0567 -1.6527 3.5949 33 1 4.2385 0.3895 1.9849 34 1 4.4018 1.8882 2.9318 35 1 3.9469 0.3695 3.7407 36 1 3.7602 4.6162 3.6017 37 1 1.6054 -1.7199 -1.2951 38 1 3.1263 -0.7996 -1.2055 39 1 3.0092 1.6140 -2.1485 40 1 1.4105 1.8452 -1.3990 41 1 1.7249 3.2823 -3.4240 42 1 0.3826 2.1291 -3.6173 43 1 0.7723 0.1320 -5.0094 44 1 2.3771 -0.0604 -5.7560 45 1 2.0739 -1.5451 -3.7635 46 1 3.3991 -0.3776 -3.5388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720623851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:36 Heat of formation + Delta-G solvation = -52.761742 kcal Electronic energy + Delta-G solvation = -22396.670173 eV Core-core repulsion = 19320.774278 eV Total energy + Delta-G solvation = -3075.895895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74345 -39.35080 -37.34502 -35.00640 -33.76257 -32.09552 -30.58135 -28.95105 -28.00667 -27.07516 -25.87984 -25.06158 -24.46453 -22.04899 -21.06984 -20.03994 -18.26628 -17.62392 -17.05378 -17.01413 -16.36692 -16.24403 -16.00931 -15.88259 -15.60092 -15.04734 -14.83671 -14.49372 -14.40497 -13.73563 -13.39327 -13.26805 -13.13099 -13.03195 -12.70943 -12.65535 -12.59262 -12.49447 -12.45478 -12.30894 -12.03474 -11.85182 -11.72231 -11.61764 -11.42620 -11.14416 -10.82410 -10.62416 -10.45250 -9.38053 -8.77663 -8.09559 -6.19460 1.41827 1.43339 1.53492 2.43629 2.73689 2.96898 3.20036 3.45225 3.88268 3.93115 4.04597 4.13919 4.18220 4.22896 4.33924 4.38903 4.55510 4.57335 4.64058 4.67267 4.71283 4.74912 4.75839 4.83090 4.85022 4.89236 4.92518 4.96773 5.01153 5.09741 5.19908 5.22802 5.34117 5.49444 5.55887 5.62292 5.72981 5.81615 5.92607 6.02419 6.18367 6.24235 6.52768 6.80786 6.95410 7.49809 8.96621 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.004754 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.655571 B = 5887.954154 C = 6578.350494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 H 0.048 0.952 4 C 0.060 3.940 5 N -0.539 5.539 6 C 0.038 3.962 7 C 0.219 3.781 8 H 0.009 0.991 9 C -0.158 4.158 10 C -0.513 4.513 11 H 0.057 0.943 12 C 0.012 3.988 13 N -0.921 5.921 14 Si 0.955 3.045 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.269 1.269 18 C 0.070 3.930 19 N -0.532 5.532 20 C 0.014 3.986 21 C 0.068 3.932 22 O -0.406 6.406 23 C 0.062 3.938 24 C 0.016 3.984 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.018 0.982 30 H 0.013 0.987 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.021 0.979 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.094 0.906 38 H 0.023 0.977 39 H 0.021 0.979 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.118 0.882 45 H 0.106 0.894 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -9.586 -12.981 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 H 0.067 0.933 4 C -0.069 4.069 5 N -0.262 5.262 6 C -0.110 4.110 7 C 0.112 3.888 8 H 0.027 0.973 9 C -0.218 4.218 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.186 4.186 13 N -0.562 5.562 14 Si 0.781 3.219 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.058 4.058 19 N -0.257 5.257 20 C -0.115 4.115 21 C -0.009 4.009 22 O -0.325 6.325 23 C -0.015 4.015 24 C -0.112 4.112 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.135 0.865 45 H 0.124 0.876 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.208 -9.267 -13.235 16.696 hybrid contribution 1.772 0.627 1.442 2.369 sum -2.436 -8.640 -11.794 14.821 Atomic orbital electron populations 1.21425 0.93499 1.01443 1.00556 1.21158 0.97787 0.98694 0.92705 0.93339 1.22113 0.96802 0.97345 0.90607 1.62211 1.56438 1.05274 1.02292 1.22204 0.98426 0.96648 0.93735 1.18991 0.87856 0.86678 0.95274 0.97270 1.22205 1.01776 1.00523 0.97279 1.21418 1.16489 1.03349 1.13849 0.92500 1.25653 0.95358 0.98450 0.99174 1.70015 1.25487 1.19557 1.41118 0.85601 0.78933 0.77672 0.79693 1.20314 1.21127 1.19349 1.22098 0.97234 0.98004 0.88441 1.62307 1.57840 1.02172 1.03379 1.22834 0.98759 0.89786 1.00096 1.22690 0.97448 0.97622 0.83125 1.87945 1.73888 1.25054 1.45624 1.22835 1.01520 0.79953 0.97145 1.22886 0.96339 1.01215 0.90764 0.92509 0.92432 0.94303 0.90103 0.96403 0.96883 0.92520 0.91004 0.95972 0.92298 0.95246 0.93132 0.88749 0.95860 0.96029 0.89804 0.87879 0.91451 0.91567 0.86453 0.87600 0.95139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.42 8.71 71.98 0.63 -2.79 16 2 C -0.08 -2.71 1.87 -10.80 -0.02 -2.73 16 3 H 0.05 1.89 4.36 -2.39 -0.01 1.88 16 4 C 0.06 2.07 4.25 86.30 0.37 2.43 16 5 N -0.54 -22.39 4.17 -901.44 -3.76 -26.15 16 6 C 0.04 1.44 8.66 127.69 1.11 2.55 16 7 C 0.22 10.98 2.23 44.17 0.10 11.08 16 8 H 0.01 0.53 6.47 -2.39 -0.02 0.51 16 9 C -0.16 -7.78 8.31 71.98 0.60 -7.18 16 10 C -0.51 -28.02 7.80 25.60 0.20 -27.82 16 11 H 0.06 3.11 6.81 -2.91 -0.02 3.09 16 12 C 0.01 0.66 5.30 84.65 0.45 1.10 16 13 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 14 Si 0.95 43.80 29.54 68.60 2.03 45.82 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 C 0.07 1.84 4.67 86.30 0.40 2.24 16 19 N -0.53 -13.37 4.26 -895.17 -3.81 -17.19 16 20 C 0.01 0.38 4.80 86.31 0.41 0.80 16 21 C 0.07 1.66 7.01 72.01 0.50 2.16 16 22 O -0.41 -10.18 10.83 -148.98 -1.61 -11.79 16 23 C 0.06 1.17 7.01 72.01 0.50 1.67 16 24 C 0.02 0.32 5.63 86.31 0.49 0.81 16 25 H 0.06 1.64 7.29 -2.39 -0.02 1.62 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.04 1.40 7.84 -2.39 -0.02 1.38 16 28 H 0.08 2.38 8.00 -2.39 -0.02 2.36 16 29 H 0.02 0.65 5.98 -2.38 -0.01 0.64 16 30 H 0.01 0.47 6.83 -2.39 -0.02 0.46 16 31 H 0.06 2.36 6.29 -2.39 -0.02 2.34 16 32 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.02 0.98 6.30 -2.39 -0.02 0.96 16 34 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 35 H 0.03 1.39 6.61 -2.39 -0.02 1.37 16 36 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.02 0.64 8.08 -2.38 -0.02 0.62 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 2.65 5.56 -2.38 -0.01 2.64 16 41 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -60.83 339.89 -0.25 -61.07 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.93 Total: 16.79 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 5.74 Total: -15.67 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -7.33 Total: -96.22 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.61 Total: -11.79 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -60.83 -0.25 -61.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.313 kcal (2) G-P(sol) polarization free energy of solvation -60.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds