Wall clock time and date at job start Mon Mar 30 2020 04:41:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46893 * 109.47164 * 2 1
4 4 C 1.46903 * 111.00075 * 298.67216 * 3 2 1
5 5 C 1.50698 * 109.46858 * 288.20802 * 4 3 2
6 6 H 1.08001 * 120.00473 * 4.30733 * 5 4 3
7 7 C 1.37876 * 120.00147 * 184.31691 * 5 4 3
8 8 N 1.31520 * 119.99777 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 120.00447 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.46861 * 359.97438 * 9 7 5
11 11 H 1.48503 * 109.47228 * 119.99688 * 9 7 5
12 12 H 1.48500 * 109.47028 * 239.99737 * 9 7 5
13 13 C 1.46906 * 111.00173 * 62.62408 * 3 2 1
14 14 C 1.52996 * 109.46836 * 76.99968 * 13 3 2
15 15 H 1.08990 * 109.54478 * 53.01742 * 14 13 3
16 16 C 1.53105 * 109.50306 * 173.12341 * 14 13 3
17 17 N 1.47014 * 109.25328 * 176.77966 * 16 14 13
18 18 C 1.46908 * 110.99406 * 177.60699 * 17 16 14
19 19 C 1.53000 * 109.46704 * 175.00190 * 18 17 16
20 20 C 1.53003 * 109.47361 * 294.99850 * 18 17 16
21 21 C 1.47011 * 110.75759 * 301.38438 * 17 16 14
22 22 C 1.53090 * 109.25678 * 58.61776 * 21 17 16
23 23 O 1.43015 * 109.50671 * 292.90566 * 14 13 3
24 24 H 1.08998 * 109.47179 * 303.50109 * 1 2 3
25 25 H 1.08994 * 109.47224 * 63.50629 * 1 2 3
26 26 H 1.09004 * 109.47068 * 183.50509 * 1 2 3
27 27 H 1.08999 * 109.46993 * 239.99541 * 2 1 3
28 28 H 1.09005 * 109.46979 * 119.99764 * 2 1 3
29 29 H 1.08999 * 109.47090 * 48.20582 * 4 3 2
30 30 H 1.08996 * 109.47093 * 168.20313 * 4 3 2
31 31 H 0.97003 * 120.00035 * 180.02562 * 8 7 5
32 32 H 1.09004 * 109.46641 * 316.99778 * 13 3 2
33 33 H 1.08995 * 109.46951 * 197.00135 * 13 3 2
34 34 H 1.09001 * 109.50287 * 56.84905 * 16 14 13
35 35 H 1.08995 * 109.50878 * 296.71815 * 16 14 13
36 36 H 1.08994 * 109.47389 * 55.00764 * 18 17 16
37 37 H 1.09005 * 109.47074 * 60.00479 * 19 18 17
38 38 H 1.08999 * 109.47378 * 179.97438 * 19 18 17
39 39 H 1.08998 * 109.47354 * 300.00080 * 19 18 17
40 40 H 1.08999 * 109.46478 * 59.99965 * 20 18 17
41 41 H 1.08995 * 109.46875 * 179.97438 * 20 18 17
42 42 H 1.09003 * 109.47044 * 300.00658 * 20 18 17
43 43 H 1.08997 * 109.50752 * 178.55630 * 21 17 16
44 44 H 1.08997 * 109.50582 * 298.68088 * 21 17 16
45 45 H 1.09006 * 109.51073 * 63.08773 * 22 21 17
46 46 H 1.09000 * 109.50568 * 183.17205 * 22 21 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.5748 2.1006 -1.2033
5 6 2.3290 1.5853 -2.4019
6 1 3.0141 0.7574 -2.2938
7 6 2.1446 2.1707 -3.6364
8 7 1.3100 3.1787 -3.7681
9 14 3.0800 1.5325 -5.1220
10 1 3.9494 0.4010 -4.7108
11 1 2.1161 1.0679 -6.1518
12 1 3.9185 2.6215 -5.6844
13 6 1.6006 2.0915 1.2179
14 6 2.4805 1.6530 2.3902
15 1 3.5302 1.7757 2.1241
16 6 2.1607 2.5100 3.6179
17 7 2.9529 2.0339 4.7611
18 6 2.7177 2.8671 5.9480
19 6 3.4591 2.2696 7.1456
20 6 3.2307 4.2845 5.6860
21 6 2.6628 0.6206 5.0436
22 6 2.9775 -0.2174 3.8017
23 8 2.2221 0.2794 2.6935
24 1 -0.3633 0.5672 0.8569
25 1 -0.3633 0.4584 -0.9197
26 1 -0.3633 -1.0258 0.0628
27 1 1.8933 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 0.5068 1.9381 -1.3486
30 1 1.7671 3.1668 -1.0838
31 1 1.1800 3.5904 -4.6368
32 1 0.5595 1.8535 1.4359
33 1 1.7039 3.1662 1.0681
34 1 1.0992 2.4291 3.8517
35 1 2.4101 3.5506 3.4103
36 1 1.6495 2.9010 6.1622
37 1 4.5274 2.2357 6.9314
38 1 3.2850 2.8880 8.0261
39 1 3.0937 1.2598 7.3323
40 1 2.7025 4.7101 4.8328
41 1 3.0557 4.9027 6.5664
42 1 4.2989 4.2505 5.4718
43 1 3.2786 0.2821 5.8768
44 1 1.6093 0.5096 5.3003
45 1 4.0418 -0.1491 3.5765
46 1 2.7108 -1.2578 3.9875
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000080746392.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:22
Heat of formation + Delta-G solvation = -34.565477 kcal
Electronic energy + Delta-G solvation = -22201.606474 eV
Core-core repulsion = 19126.499628 eV
Total energy + Delta-G solvation = -3075.106846 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-39.83807 -37.37215 -36.20858 -32.66997 -32.13941 -31.74275 -29.32785 -28.13229
-27.17473 -26.12038 -24.17734 -23.18834 -22.40256 -20.67645 -20.09244 -19.11346
-16.68668 -16.28959 -16.10951 -15.59525 -15.06857 -14.75926 -14.57276 -14.35231
-14.14517 -13.92703 -13.49317 -13.07514 -12.77832 -12.51032 -12.41848 -12.00556
-11.97844 -11.75597 -11.59293 -11.32311 -11.24330 -11.12879 -11.03660 -10.75512
-10.72656 -10.55491 -10.49311 -10.17549 -9.93662 -9.68991 -9.22358 -9.02637
-8.42154 -8.35445 -7.05007 -5.95379 -3.95120 3.35603 3.42810 3.48491
3.64338 4.01111 4.48522 4.64843 4.75192 4.88763 4.97233 5.09909
5.19632 5.25337 5.36161 5.39439 5.43198 5.46530 5.55033 5.57890
5.61085 5.68423 5.73888 5.81778 5.87896 5.93185 5.98420 6.06265
6.10505 6.14406 6.30197 6.36114 6.41717 6.75638 6.83026 6.92055
6.94215 7.14751 7.39390 7.48626 7.52383 7.91240 8.20626 8.37012
8.66345 9.12995 9.68324 11.15448
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.029169 B = 0.004023 C = 0.003814
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 959.699483 B = 6958.907085 C = 7338.887715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.057 3.943
3 N -0.530 5.530
4 C 0.186 3.814
5 C -0.498 4.498
6 H 0.062 0.938
7 C 0.053 3.947
8 N -0.902 5.902
9 Si 0.896 3.104
10 H -0.272 1.272
11 H -0.286 1.286
12 H -0.285 1.285
13 C 0.057 3.943
14 C 0.104 3.896
15 H 0.074 0.926
16 C 0.024 3.976
17 N -0.531 5.531
18 C 0.075 3.925
19 C -0.148 4.148
20 C -0.145 4.145
21 C 0.016 3.984
22 C 0.061 3.939
23 O -0.369 6.369
24 H 0.045 0.955
25 H 0.061 0.939
26 H 0.043 0.957
27 H 0.070 0.930
28 H 0.078 0.922
29 H -0.003 1.003
30 H 0.027 0.973
31 H 0.259 0.741
32 H 0.038 0.962
33 H 0.078 0.922
34 H 0.038 0.962
35 H 0.087 0.913
36 H 0.038 0.962
37 H 0.064 0.936
38 H 0.058 0.942
39 H 0.056 0.944
40 H 0.057 0.943
41 H 0.057 0.943
42 H 0.065 0.935
43 H 0.085 0.915
44 H 0.037 0.963
45 H 0.057 0.943
46 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.755 -2.433 20.576 20.793
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C -0.071 4.071
3 N -0.253 5.253
4 C 0.061 3.939
5 C -0.537 4.537
6 H 0.081 0.919
7 C -0.148 4.148
8 N -0.542 5.542
9 Si 0.724 3.276
10 H -0.197 1.197
11 H -0.212 1.212
12 H -0.211 1.211
13 C -0.073 4.073
14 C 0.045 3.955
15 H 0.092 0.908
16 C -0.105 4.105
17 N -0.257 5.257
18 C -0.033 4.033
19 C -0.206 4.206
20 C -0.203 4.203
21 C -0.112 4.112
22 C -0.016 4.016
23 O -0.288 6.288
24 H 0.064 0.936
25 H 0.080 0.920
26 H 0.062 0.938
27 H 0.088 0.912
28 H 0.096 0.904
29 H 0.015 0.985
30 H 0.045 0.955
31 H 0.069 0.931
32 H 0.056 0.944
33 H 0.096 0.904
34 H 0.056 0.944
35 H 0.105 0.895
36 H 0.056 0.944
37 H 0.084 0.916
38 H 0.077 0.923
39 H 0.075 0.925
40 H 0.076 0.924
41 H 0.076 0.924
42 H 0.084 0.916
43 H 0.103 0.897
44 H 0.056 0.944
45 H 0.075 0.925
46 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 2.576 -2.388 20.197 20.500
hybrid contribution -1.216 -0.048 -0.454 1.299
sum 1.360 -2.436 19.743 19.939
Atomic orbital electron populations
1.22346 0.99982 1.00458 1.01544 1.22132 0.91689 0.91254 1.02018
1.62259 1.59155 1.02132 1.01738 1.19836 0.94383 0.93695 0.85975
1.21210 1.24095 1.16396 0.91950 0.91937 1.24980 0.95652 0.95174
0.98973 1.69972 1.36536 1.23641 1.24043 0.86474 0.79695 0.78813
0.82637 1.19674 1.21239 1.21121 1.22107 0.96273 0.98436 0.90438
1.22289 1.00592 0.80432 0.92150 0.90839 1.22844 0.95522 1.00547
0.91576 1.62272 1.56219 1.02027 1.05187 1.21630 0.97705 0.93813
0.90144 1.21942 1.01380 1.00614 0.96656 1.21858 1.02319 0.94638
1.01472 1.22859 0.99694 0.89219 0.99461 1.22583 0.96521 0.96981
0.85523 1.88084 1.65656 1.26364 1.48696 0.93601 0.92047 0.93756
0.91156 0.90409 0.98516 0.95455 0.93143 0.94416 0.90364 0.94366
0.89460 0.94412 0.91644 0.92266 0.92527 0.92372 0.92390 0.91632
0.89672 0.94443 0.92514 0.89066
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.53 9.30 37.16 0.35 -3.19 16
2 C 0.06 1.17 5.71 -3.83 -0.02 1.15 16
3 N -0.53 -11.70 4.58 -236.07 -1.08 -12.78 16
4 C 0.19 4.89 4.58 -4.98 -0.02 4.87 16
5 C -0.50 -14.22 8.64 -34.44 -0.30 -14.52 16
6 H 0.06 1.79 7.35 -52.49 -0.39 1.41 16
7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16
8 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16
9 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16
10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
13 C 0.06 1.05 4.71 -3.82 -0.02 1.03 16
14 C 0.10 1.65 3.02 -26.68 -0.08 1.57 16
15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
16 C 0.02 0.31 4.70 -3.71 -0.02 0.29 16
17 N -0.53 -6.28 4.59 -226.33 -1.04 -7.32 16
18 C 0.08 0.74 2.68 -67.71 -0.18 0.56 16
19 C -0.15 -1.20 8.67 37.16 0.32 -0.87 16
20 C -0.15 -1.33 9.10 37.16 0.34 -1.00 16
21 C 0.02 0.17 5.11 -3.72 -0.02 0.15 16
22 C 0.06 0.75 7.01 37.20 0.26 1.01 16
23 O -0.37 -5.81 7.68 -35.23 -0.27 -6.08 16
24 H 0.05 0.84 6.00 -51.93 -0.31 0.53 16
25 H 0.06 1.32 6.37 -51.93 -0.33 0.99 16
26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16
27 H 0.07 1.56 7.15 -51.93 -0.37 1.19 16
28 H 0.08 1.50 5.43 -51.93 -0.28 1.21 16
29 H 0.00 -0.08 5.88 -51.93 -0.31 -0.38 16
30 H 0.03 0.77 7.68 -51.93 -0.40 0.37 16
31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
32 H 0.04 0.70 5.68 -51.93 -0.29 0.40 16
33 H 0.08 1.42 7.62 -51.93 -0.40 1.03 16
34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16
35 H 0.09 1.10 6.33 -51.93 -0.33 0.77 16
36 H 0.04 0.39 8.13 -51.93 -0.42 -0.03 16
37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
39 H 0.06 0.43 6.26 -51.93 -0.33 0.11 16
40 H 0.06 0.56 6.47 -51.93 -0.34 0.23 16
41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
43 H 0.09 0.78 6.05 -51.93 -0.31 0.46 16
44 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16
45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
46 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16
LS Contribution 341.84 15.07 5.15 5.15
Total: -1.00 -30.31 341.84 -9.18 -39.49
By element:
Atomic # 1 Polarization: 6.56 SS G_CDS: -8.17 Total: -1.61 kcal
Atomic # 6 Polarization: -8.03 SS G_CDS: 0.51 Total: -7.52 kcal
Atomic # 7 Polarization: -45.06 SS G_CDS: -1.38 Total: -46.45 kcal
Atomic # 8 Polarization: -5.81 SS G_CDS: -0.27 Total: -6.08 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -30.31 -9.18 -39.49 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000080746392.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.928 kcal
(2) G-P(sol) polarization free energy of solvation -30.314 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.385 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.565 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds