Wall clock time and date at job start Mon Mar 30 2020 04:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47164 * 2 1 4 4 C 1.46903 * 111.00075 * 298.67216 * 3 2 1 5 5 C 1.50698 * 109.46858 * 288.20802 * 4 3 2 6 6 H 1.08001 * 120.00473 * 4.30733 * 5 4 3 7 7 C 1.37876 * 120.00147 * 184.31691 * 5 4 3 8 8 N 1.31520 * 119.99777 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00447 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46861 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47228 * 119.99688 * 9 7 5 12 12 H 1.48500 * 109.47028 * 239.99737 * 9 7 5 13 13 C 1.46906 * 111.00173 * 62.62408 * 3 2 1 14 14 C 1.52996 * 109.46836 * 76.99968 * 13 3 2 15 15 H 1.08990 * 109.54478 * 53.01742 * 14 13 3 16 16 C 1.53105 * 109.50306 * 173.12341 * 14 13 3 17 17 N 1.47014 * 109.25328 * 176.77966 * 16 14 13 18 18 C 1.46908 * 110.99406 * 177.60699 * 17 16 14 19 19 C 1.53000 * 109.46704 * 175.00190 * 18 17 16 20 20 C 1.53003 * 109.47361 * 294.99850 * 18 17 16 21 21 C 1.47011 * 110.75759 * 301.38438 * 17 16 14 22 22 C 1.53090 * 109.25678 * 58.61776 * 21 17 16 23 23 O 1.43015 * 109.50671 * 292.90566 * 14 13 3 24 24 H 1.08998 * 109.47179 * 303.50109 * 1 2 3 25 25 H 1.08994 * 109.47224 * 63.50629 * 1 2 3 26 26 H 1.09004 * 109.47068 * 183.50509 * 1 2 3 27 27 H 1.08999 * 109.46993 * 239.99541 * 2 1 3 28 28 H 1.09005 * 109.46979 * 119.99764 * 2 1 3 29 29 H 1.08999 * 109.47090 * 48.20582 * 4 3 2 30 30 H 1.08996 * 109.47093 * 168.20313 * 4 3 2 31 31 H 0.97003 * 120.00035 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46641 * 316.99778 * 13 3 2 33 33 H 1.08995 * 109.46951 * 197.00135 * 13 3 2 34 34 H 1.09001 * 109.50287 * 56.84905 * 16 14 13 35 35 H 1.08995 * 109.50878 * 296.71815 * 16 14 13 36 36 H 1.08994 * 109.47389 * 55.00764 * 18 17 16 37 37 H 1.09005 * 109.47074 * 60.00479 * 19 18 17 38 38 H 1.08999 * 109.47378 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47354 * 300.00080 * 19 18 17 40 40 H 1.08999 * 109.46478 * 59.99965 * 20 18 17 41 41 H 1.08995 * 109.46875 * 179.97438 * 20 18 17 42 42 H 1.09003 * 109.47044 * 300.00658 * 20 18 17 43 43 H 1.08997 * 109.50752 * 178.55630 * 21 17 16 44 44 H 1.08997 * 109.50582 * 298.68088 * 21 17 16 45 45 H 1.09006 * 109.51073 * 63.08773 * 22 21 17 46 46 H 1.09000 * 109.50568 * 183.17205 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5748 2.1006 -1.2033 5 6 2.3290 1.5853 -2.4019 6 1 3.0141 0.7574 -2.2938 7 6 2.1446 2.1707 -3.6364 8 7 1.3100 3.1787 -3.7681 9 14 3.0800 1.5325 -5.1220 10 1 3.9494 0.4010 -4.7108 11 1 2.1161 1.0679 -6.1518 12 1 3.9185 2.6215 -5.6844 13 6 1.6006 2.0915 1.2179 14 6 2.4805 1.6530 2.3902 15 1 3.5302 1.7757 2.1241 16 6 2.1607 2.5100 3.6179 17 7 2.9529 2.0339 4.7611 18 6 2.7177 2.8671 5.9480 19 6 3.4591 2.2696 7.1456 20 6 3.2307 4.2845 5.6860 21 6 2.6628 0.6206 5.0436 22 6 2.9775 -0.2174 3.8017 23 8 2.2221 0.2794 2.6935 24 1 -0.3633 0.5672 0.8569 25 1 -0.3633 0.4584 -0.9197 26 1 -0.3633 -1.0258 0.0628 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5068 1.9381 -1.3486 30 1 1.7671 3.1668 -1.0838 31 1 1.1800 3.5904 -4.6368 32 1 0.5595 1.8535 1.4359 33 1 1.7039 3.1662 1.0681 34 1 1.0992 2.4291 3.8517 35 1 2.4101 3.5506 3.4103 36 1 1.6495 2.9010 6.1622 37 1 4.5274 2.2357 6.9314 38 1 3.2850 2.8880 8.0261 39 1 3.0937 1.2598 7.3323 40 1 2.7025 4.7101 4.8328 41 1 3.0557 4.9027 6.5664 42 1 4.2989 4.2505 5.4718 43 1 3.2786 0.2821 5.8768 44 1 1.6093 0.5096 5.3003 45 1 4.0418 -0.1491 3.5765 46 1 2.7108 -1.2578 3.9875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080746392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:22 Heat of formation + Delta-G solvation = -34.565477 kcal Electronic energy + Delta-G solvation = -22201.606474 eV Core-core repulsion = 19126.499628 eV Total energy + Delta-G solvation = -3075.106846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.83807 -37.37215 -36.20858 -32.66997 -32.13941 -31.74275 -29.32785 -28.13229 -27.17473 -26.12038 -24.17734 -23.18834 -22.40256 -20.67645 -20.09244 -19.11346 -16.68668 -16.28959 -16.10951 -15.59525 -15.06857 -14.75926 -14.57276 -14.35231 -14.14517 -13.92703 -13.49317 -13.07514 -12.77832 -12.51032 -12.41848 -12.00556 -11.97844 -11.75597 -11.59293 -11.32311 -11.24330 -11.12879 -11.03660 -10.75512 -10.72656 -10.55491 -10.49311 -10.17549 -9.93662 -9.68991 -9.22358 -9.02637 -8.42154 -8.35445 -7.05007 -5.95379 -3.95120 3.35603 3.42810 3.48491 3.64338 4.01111 4.48522 4.64843 4.75192 4.88763 4.97233 5.09909 5.19632 5.25337 5.36161 5.39439 5.43198 5.46530 5.55033 5.57890 5.61085 5.68423 5.73888 5.81778 5.87896 5.93185 5.98420 6.06265 6.10505 6.14406 6.30197 6.36114 6.41717 6.75638 6.83026 6.92055 6.94215 7.14751 7.39390 7.48626 7.52383 7.91240 8.20626 8.37012 8.66345 9.12995 9.68324 11.15448 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.029169 B = 0.004023 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.699483 B = 6958.907085 C = 7338.887715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.057 3.943 3 N -0.530 5.530 4 C 0.186 3.814 5 C -0.498 4.498 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.902 5.902 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.057 3.943 14 C 0.104 3.896 15 H 0.074 0.926 16 C 0.024 3.976 17 N -0.531 5.531 18 C 0.075 3.925 19 C -0.148 4.148 20 C -0.145 4.145 21 C 0.016 3.984 22 C 0.061 3.939 23 O -0.369 6.369 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.078 0.922 29 H -0.003 1.003 30 H 0.027 0.973 31 H 0.259 0.741 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -2.433 20.576 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.071 4.071 3 N -0.253 5.253 4 C 0.061 3.939 5 C -0.537 4.537 6 H 0.081 0.919 7 C -0.148 4.148 8 N -0.542 5.542 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.073 4.073 14 C 0.045 3.955 15 H 0.092 0.908 16 C -0.105 4.105 17 N -0.257 5.257 18 C -0.033 4.033 19 C -0.206 4.206 20 C -0.203 4.203 21 C -0.112 4.112 22 C -0.016 4.016 23 O -0.288 6.288 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.015 0.985 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.576 -2.388 20.197 20.500 hybrid contribution -1.216 -0.048 -0.454 1.299 sum 1.360 -2.436 19.743 19.939 Atomic orbital electron populations 1.22346 0.99982 1.00458 1.01544 1.22132 0.91689 0.91254 1.02018 1.62259 1.59155 1.02132 1.01738 1.19836 0.94383 0.93695 0.85975 1.21210 1.24095 1.16396 0.91950 0.91937 1.24980 0.95652 0.95174 0.98973 1.69972 1.36536 1.23641 1.24043 0.86474 0.79695 0.78813 0.82637 1.19674 1.21239 1.21121 1.22107 0.96273 0.98436 0.90438 1.22289 1.00592 0.80432 0.92150 0.90839 1.22844 0.95522 1.00547 0.91576 1.62272 1.56219 1.02027 1.05187 1.21630 0.97705 0.93813 0.90144 1.21942 1.01380 1.00614 0.96656 1.21858 1.02319 0.94638 1.01472 1.22859 0.99694 0.89219 0.99461 1.22583 0.96521 0.96981 0.85523 1.88084 1.65656 1.26364 1.48696 0.93601 0.92047 0.93756 0.91156 0.90409 0.98516 0.95455 0.93143 0.94416 0.90364 0.94366 0.89460 0.94412 0.91644 0.92266 0.92527 0.92372 0.92390 0.91632 0.89672 0.94443 0.92514 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 9.30 37.16 0.35 -3.19 16 2 C 0.06 1.17 5.71 -3.83 -0.02 1.15 16 3 N -0.53 -11.70 4.58 -236.07 -1.08 -12.78 16 4 C 0.19 4.89 4.58 -4.98 -0.02 4.87 16 5 C -0.50 -14.22 8.64 -34.44 -0.30 -14.52 16 6 H 0.06 1.79 7.35 -52.49 -0.39 1.41 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 9 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.05 4.71 -3.82 -0.02 1.03 16 14 C 0.10 1.65 3.02 -26.68 -0.08 1.57 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 16 C 0.02 0.31 4.70 -3.71 -0.02 0.29 16 17 N -0.53 -6.28 4.59 -226.33 -1.04 -7.32 16 18 C 0.08 0.74 2.68 -67.71 -0.18 0.56 16 19 C -0.15 -1.20 8.67 37.16 0.32 -0.87 16 20 C -0.15 -1.33 9.10 37.16 0.34 -1.00 16 21 C 0.02 0.17 5.11 -3.72 -0.02 0.15 16 22 C 0.06 0.75 7.01 37.20 0.26 1.01 16 23 O -0.37 -5.81 7.68 -35.23 -0.27 -6.08 16 24 H 0.05 0.84 6.00 -51.93 -0.31 0.53 16 25 H 0.06 1.32 6.37 -51.93 -0.33 0.99 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.56 7.15 -51.93 -0.37 1.19 16 28 H 0.08 1.50 5.43 -51.93 -0.28 1.21 16 29 H 0.00 -0.08 5.88 -51.93 -0.31 -0.38 16 30 H 0.03 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.04 0.70 5.68 -51.93 -0.29 0.40 16 33 H 0.08 1.42 7.62 -51.93 -0.40 1.03 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.10 6.33 -51.93 -0.33 0.77 16 36 H 0.04 0.39 8.13 -51.93 -0.42 -0.03 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.43 6.26 -51.93 -0.33 0.11 16 40 H 0.06 0.56 6.47 -51.93 -0.34 0.23 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.78 6.05 -51.93 -0.31 0.46 16 44 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -30.31 341.84 -9.18 -39.49 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.17 Total: -1.61 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 0.51 Total: -7.52 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -1.38 Total: -46.45 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.27 Total: -6.08 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.31 -9.18 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080746392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.928 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds