Wall clock time and date at job start Mon Mar 30 2020 04:41:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46893 * 109.47164 * 2 1
4 4 C 1.46903 * 111.00075 * 298.67216 * 3 2 1
5 5 C 1.50698 * 109.46858 * 288.20802 * 4 3 2
6 6 H 1.08001 * 120.00473 * 4.30733 * 5 4 3
7 7 C 1.37876 * 120.00147 * 184.31691 * 5 4 3
8 8 N 1.31520 * 119.99777 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 120.00447 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.46861 * 359.97438 * 9 7 5
11 11 H 1.48503 * 109.47228 * 119.99688 * 9 7 5
12 12 H 1.48500 * 109.47028 * 239.99737 * 9 7 5
13 13 C 1.46906 * 111.00173 * 62.62408 * 3 2 1
14 14 C 1.52996 * 109.46836 * 76.99968 * 13 3 2
15 15 H 1.08990 * 109.54478 * 53.01742 * 14 13 3
16 16 C 1.53105 * 109.50306 * 173.12341 * 14 13 3
17 17 N 1.47014 * 109.25328 * 176.77966 * 16 14 13
18 18 C 1.46908 * 110.99406 * 177.60699 * 17 16 14
19 19 C 1.53000 * 109.46704 * 175.00190 * 18 17 16
20 20 C 1.53003 * 109.47361 * 294.99850 * 18 17 16
21 21 C 1.47011 * 110.75759 * 301.38438 * 17 16 14
22 22 C 1.53090 * 109.25678 * 58.61776 * 21 17 16
23 23 O 1.43015 * 109.50671 * 292.90566 * 14 13 3
24 24 H 1.08998 * 109.47179 * 303.50109 * 1 2 3
25 25 H 1.08994 * 109.47224 * 63.50629 * 1 2 3
26 26 H 1.09004 * 109.47068 * 183.50509 * 1 2 3
27 27 H 1.08999 * 109.46993 * 239.99541 * 2 1 3
28 28 H 1.09005 * 109.46979 * 119.99764 * 2 1 3
29 29 H 1.08999 * 109.47090 * 48.20582 * 4 3 2
30 30 H 1.08996 * 109.47093 * 168.20313 * 4 3 2
31 31 H 0.97003 * 120.00035 * 180.02562 * 8 7 5
32 32 H 1.09004 * 109.46641 * 316.99778 * 13 3 2
33 33 H 1.08995 * 109.46951 * 197.00135 * 13 3 2
34 34 H 1.09001 * 109.50287 * 56.84905 * 16 14 13
35 35 H 1.08995 * 109.50878 * 296.71815 * 16 14 13
36 36 H 1.08994 * 109.47389 * 55.00764 * 18 17 16
37 37 H 1.09005 * 109.47074 * 60.00479 * 19 18 17
38 38 H 1.08999 * 109.47378 * 179.97438 * 19 18 17
39 39 H 1.08998 * 109.47354 * 300.00080 * 19 18 17
40 40 H 1.08999 * 109.46478 * 59.99965 * 20 18 17
41 41 H 1.08995 * 109.46875 * 179.97438 * 20 18 17
42 42 H 1.09003 * 109.47044 * 300.00658 * 20 18 17
43 43 H 1.08997 * 109.50752 * 178.55630 * 21 17 16
44 44 H 1.08997 * 109.50582 * 298.68088 * 21 17 16
45 45 H 1.09006 * 109.51073 * 63.08773 * 22 21 17
46 46 H 1.09000 * 109.50568 * 183.17205 * 22 21 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.5748 2.1006 -1.2033
5 6 2.3290 1.5853 -2.4019
6 1 3.0141 0.7574 -2.2938
7 6 2.1446 2.1707 -3.6364
8 7 1.3100 3.1787 -3.7681
9 14 3.0800 1.5325 -5.1220
10 1 3.9494 0.4010 -4.7108
11 1 2.1161 1.0679 -6.1518
12 1 3.9185 2.6215 -5.6844
13 6 1.6006 2.0915 1.2179
14 6 2.4805 1.6530 2.3902
15 1 3.5302 1.7757 2.1241
16 6 2.1607 2.5100 3.6179
17 7 2.9529 2.0339 4.7611
18 6 2.7177 2.8671 5.9480
19 6 3.4591 2.2696 7.1456
20 6 3.2307 4.2845 5.6860
21 6 2.6628 0.6206 5.0436
22 6 2.9775 -0.2174 3.8017
23 8 2.2221 0.2794 2.6935
24 1 -0.3633 0.5672 0.8569
25 1 -0.3633 0.4584 -0.9197
26 1 -0.3633 -1.0258 0.0628
27 1 1.8933 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 0.5068 1.9381 -1.3486
30 1 1.7671 3.1668 -1.0838
31 1 1.1800 3.5904 -4.6368
32 1 0.5595 1.8535 1.4359
33 1 1.7039 3.1662 1.0681
34 1 1.0992 2.4291 3.8517
35 1 2.4101 3.5506 3.4103
36 1 1.6495 2.9010 6.1622
37 1 4.5274 2.2357 6.9314
38 1 3.2850 2.8880 8.0261
39 1 3.0937 1.2598 7.3323
40 1 2.7025 4.7101 4.8328
41 1 3.0557 4.9027 6.5664
42 1 4.2989 4.2505 5.4718
43 1 3.2786 0.2821 5.8768
44 1 1.6093 0.5096 5.3003
45 1 4.0418 -0.1491 3.5765
46 1 2.7108 -1.2578 3.9875
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000080746392.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:22
Heat of formation + Delta-G solvation = -55.343623 kcal
Electronic energy + Delta-G solvation = -22202.507482 eV
Core-core repulsion = 19126.499628 eV
Total energy + Delta-G solvation = -3076.007854 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.92562 -38.83951 -37.41446 -34.75956 -33.25682 -32.80627 -30.98008 -29.57479
-28.09225 -27.61677 -25.49208 -24.98214 -23.70679 -21.84666 -21.11764 -20.64516
-18.33808 -17.65052 -17.53507 -16.91643 -16.59586 -16.00190 -15.88762 -15.55286
-15.53109 -15.17480 -14.66211 -14.52278 -14.40260 -13.78162 -13.42238 -13.19136
-13.13138 -12.88783 -12.84874 -12.79948 -12.73244 -12.54818 -12.46000 -12.34694
-12.13896 -12.00459 -11.81083 -11.56425 -11.48681 -11.36718 -11.09884 -10.57508
-10.37172 -9.34882 -8.86275 -8.16451 -6.25150 1.41244 1.41862 1.55715
2.42421 2.72167 2.86158 3.15079 3.38450 3.88993 3.99239 4.02687
4.08049 4.17514 4.19297 4.33086 4.37951 4.41185 4.44371 4.55782
4.60256 4.64505 4.70099 4.78047 4.81502 4.82619 4.87598 4.94954
4.96082 4.99378 5.07354 5.09516 5.20614 5.30749 5.33748 5.38691
5.39417 5.56471 5.72878 5.98582 6.09631 6.12926 6.32184 6.49011
6.71590 6.90975 7.43618 8.94188
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.029169 B = 0.004023 C = 0.003814
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 959.699483 B = 6958.907085 C = 7338.887715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.061 3.939
3 N -0.539 5.539
4 C 0.202 3.798
5 C -0.516 4.516
6 H 0.057 0.943
7 C 0.001 3.999
8 N -0.935 5.935
9 Si 0.966 3.034
10 H -0.265 1.265
11 H -0.279 1.279
12 H -0.278 1.278
13 C 0.058 3.942
14 C 0.116 3.884
15 H 0.056 0.944
16 C 0.034 3.966
17 N -0.540 5.540
18 C 0.072 3.928
19 C -0.143 4.143
20 C -0.144 4.144
21 C 0.020 3.980
22 C 0.056 3.944
23 O -0.389 6.389
24 H 0.053 0.947
25 H 0.031 0.969
26 H 0.070 0.930
27 H 0.049 0.951
28 H 0.097 0.903
29 H -0.023 1.023
30 H 0.001 0.999
31 H 0.263 0.737
32 H 0.040 0.960
33 H 0.073 0.927
34 H 0.036 0.964
35 H 0.090 0.910
36 H 0.036 0.964
37 H 0.061 0.939
38 H 0.074 0.926
39 H 0.062 0.938
40 H 0.048 0.952
41 H 0.075 0.925
42 H 0.059 0.941
43 H 0.108 0.892
44 H 0.036 0.964
45 H 0.052 0.948
46 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.364 -3.415 22.116 22.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.067 4.067
3 N -0.262 5.262
4 C 0.076 3.924
5 C -0.554 4.554
6 H 0.075 0.925
7 C -0.197 4.197
8 N -0.576 5.576
9 Si 0.791 3.209
10 H -0.190 1.190
11 H -0.204 1.204
12 H -0.204 1.204
13 C -0.071 4.071
14 C 0.057 3.943
15 H 0.074 0.926
16 C -0.095 4.095
17 N -0.266 5.266
18 C -0.035 4.035
19 C -0.201 4.201
20 C -0.201 4.201
21 C -0.108 4.108
22 C -0.021 4.021
23 O -0.308 6.308
24 H 0.072 0.928
25 H 0.050 0.950
26 H 0.089 0.911
27 H 0.067 0.933
28 H 0.114 0.886
29 H -0.006 1.006
30 H 0.019 0.981
31 H 0.072 0.928
32 H 0.058 0.942
33 H 0.092 0.908
34 H 0.054 0.946
35 H 0.108 0.892
36 H 0.054 0.946
37 H 0.080 0.920
38 H 0.092 0.908
39 H 0.081 0.919
40 H 0.067 0.933
41 H 0.094 0.906
42 H 0.078 0.922
43 H 0.126 0.874
44 H 0.055 0.945
45 H 0.071 0.929
46 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 3.189 -3.380 21.769 22.259
hybrid contribution -1.408 0.240 -0.848 1.661
sum 1.781 -3.140 20.920 21.229
Atomic orbital electron populations
1.22217 0.98811 1.01914 1.00262 1.22115 0.92625 0.90157 1.01797
1.62179 1.59587 1.02855 1.01578 1.19487 0.92919 0.92485 0.87543
1.21482 1.24291 1.16440 0.93194 0.92469 1.25865 0.96475 0.95270
1.02064 1.70089 1.37792 1.24733 1.25017 0.85377 0.78422 0.78421
0.78656 1.18957 1.20441 1.20377 1.22138 0.97028 0.98005 0.89888
1.21959 0.98593 0.81474 0.92231 0.92642 1.22643 0.95590 1.00077
0.91210 1.62292 1.55894 1.02870 1.05548 1.21739 0.97975 0.93878
0.89940 1.21910 1.00818 1.01137 0.96216 1.21855 1.01710 0.94654
1.01923 1.22869 1.00084 0.88451 0.99399 1.22824 0.95953 0.98327
0.84948 1.88002 1.66416 1.25983 1.50408 0.92777 0.95034 0.91146
0.93290 0.88554 1.00584 0.98094 0.92817 0.94184 0.90825 0.94558
0.89208 0.94567 0.91967 0.90758 0.91920 0.93319 0.90645 0.92211
0.87396 0.94546 0.92922 0.86814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -6.60 9.30 71.98 0.67 -5.93 16
2 C 0.06 2.51 5.71 86.31 0.49 3.00 16
3 N -0.54 -24.37 4.58 -900.80 -4.13 -28.49 16
4 C 0.20 11.03 4.58 85.56 0.39 11.42 16
5 C -0.52 -30.17 8.64 25.60 0.22 -29.95 16
6 H 0.06 3.34 7.35 -2.91 -0.02 3.31 16
7 C 0.00 0.04 5.46 84.65 0.46 0.50 16
8 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16
9 Si 0.97 45.50 29.54 68.60 2.03 47.52 16
10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16
12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
13 C 0.06 2.18 4.71 86.30 0.41 2.59 16
14 C 0.12 3.65 3.02 30.63 0.09 3.74 16
15 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
16 C 0.03 0.86 4.70 86.32 0.41 1.27 16
17 N -0.54 -11.88 4.59 -869.98 -4.00 -15.87 16
18 C 0.07 1.28 2.68 44.92 0.12 1.40 16
19 C -0.14 -1.91 8.67 71.98 0.62 -1.29 16
20 C -0.14 -2.42 9.10 71.98 0.65 -1.76 16
21 C 0.02 0.38 5.11 86.31 0.44 0.82 16
22 C 0.06 1.26 7.01 72.01 0.50 1.76 16
23 O -0.39 -11.77 7.68 -148.98 -1.14 -12.92 16
24 H 0.05 1.95 6.00 -2.39 -0.01 1.93 16
25 H 0.03 1.37 6.37 -2.39 -0.02 1.35 16
26 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16
27 H 0.05 2.20 7.15 -2.39 -0.02 2.19 16
28 H 0.10 3.63 5.43 -2.38 -0.01 3.61 16
29 H -0.02 -1.36 5.88 -2.39 -0.01 -1.37 16
30 H 0.00 0.06 7.68 -2.39 -0.02 0.04 16
31 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16
32 H 0.04 1.48 5.68 -2.39 -0.01 1.47 16
33 H 0.07 2.78 7.62 -2.39 -0.02 2.76 16
34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16
35 H 0.09 2.24 6.33 -2.39 -0.02 2.23 16
36 H 0.04 0.67 8.13 -2.39 -0.02 0.65 16
37 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16
38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
39 H 0.06 0.76 6.26 -2.39 -0.01 0.74 16
40 H 0.05 0.90 6.47 -2.39 -0.02 0.88 16
41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
43 H 0.11 1.62 6.05 -2.39 -0.01 1.61 16
44 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16
45 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16
46 H 0.11 2.02 8.14 -2.39 -0.02 2.01 16
Total: -1.00 -65.62 341.84 -0.54 -66.16
By element:
Atomic # 1 Polarization: 12.06 SS G_CDS: 0.93 Total: 12.99 kcal
Atomic # 6 Polarization: -17.92 SS G_CDS: 5.49 Total: -12.43 kcal
Atomic # 7 Polarization: -93.49 SS G_CDS: -7.84 Total: -101.33 kcal
Atomic # 8 Polarization: -11.77 SS G_CDS: -1.14 Total: -12.92 kcal
Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal
Total: -65.62 -0.54 -66.16 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000080746392.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.813 kcal
(2) G-P(sol) polarization free energy of solvation -65.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.808 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds