Wall clock time and date at job start Mon Mar 30 2020 04:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47164 * 2 1 4 4 C 1.46903 * 111.00075 * 298.67216 * 3 2 1 5 5 C 1.50698 * 109.46858 * 288.20802 * 4 3 2 6 6 H 1.08001 * 120.00473 * 4.30733 * 5 4 3 7 7 C 1.37876 * 120.00147 * 184.31691 * 5 4 3 8 8 N 1.31520 * 119.99777 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00447 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46861 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47228 * 119.99688 * 9 7 5 12 12 H 1.48500 * 109.47028 * 239.99737 * 9 7 5 13 13 C 1.46906 * 111.00173 * 62.62408 * 3 2 1 14 14 C 1.52996 * 109.46836 * 76.99968 * 13 3 2 15 15 H 1.08990 * 109.54478 * 53.01742 * 14 13 3 16 16 C 1.53105 * 109.50306 * 173.12341 * 14 13 3 17 17 N 1.47014 * 109.25328 * 176.77966 * 16 14 13 18 18 C 1.46908 * 110.99406 * 177.60699 * 17 16 14 19 19 C 1.53000 * 109.46704 * 175.00190 * 18 17 16 20 20 C 1.53003 * 109.47361 * 294.99850 * 18 17 16 21 21 C 1.47011 * 110.75759 * 301.38438 * 17 16 14 22 22 C 1.53090 * 109.25678 * 58.61776 * 21 17 16 23 23 O 1.43015 * 109.50671 * 292.90566 * 14 13 3 24 24 H 1.08998 * 109.47179 * 303.50109 * 1 2 3 25 25 H 1.08994 * 109.47224 * 63.50629 * 1 2 3 26 26 H 1.09004 * 109.47068 * 183.50509 * 1 2 3 27 27 H 1.08999 * 109.46993 * 239.99541 * 2 1 3 28 28 H 1.09005 * 109.46979 * 119.99764 * 2 1 3 29 29 H 1.08999 * 109.47090 * 48.20582 * 4 3 2 30 30 H 1.08996 * 109.47093 * 168.20313 * 4 3 2 31 31 H 0.97003 * 120.00035 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46641 * 316.99778 * 13 3 2 33 33 H 1.08995 * 109.46951 * 197.00135 * 13 3 2 34 34 H 1.09001 * 109.50287 * 56.84905 * 16 14 13 35 35 H 1.08995 * 109.50878 * 296.71815 * 16 14 13 36 36 H 1.08994 * 109.47389 * 55.00764 * 18 17 16 37 37 H 1.09005 * 109.47074 * 60.00479 * 19 18 17 38 38 H 1.08999 * 109.47378 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47354 * 300.00080 * 19 18 17 40 40 H 1.08999 * 109.46478 * 59.99965 * 20 18 17 41 41 H 1.08995 * 109.46875 * 179.97438 * 20 18 17 42 42 H 1.09003 * 109.47044 * 300.00658 * 20 18 17 43 43 H 1.08997 * 109.50752 * 178.55630 * 21 17 16 44 44 H 1.08997 * 109.50582 * 298.68088 * 21 17 16 45 45 H 1.09006 * 109.51073 * 63.08773 * 22 21 17 46 46 H 1.09000 * 109.50568 * 183.17205 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5748 2.1006 -1.2033 5 6 2.3290 1.5853 -2.4019 6 1 3.0141 0.7574 -2.2938 7 6 2.1446 2.1707 -3.6364 8 7 1.3100 3.1787 -3.7681 9 14 3.0800 1.5325 -5.1220 10 1 3.9494 0.4010 -4.7108 11 1 2.1161 1.0679 -6.1518 12 1 3.9185 2.6215 -5.6844 13 6 1.6006 2.0915 1.2179 14 6 2.4805 1.6530 2.3902 15 1 3.5302 1.7757 2.1241 16 6 2.1607 2.5100 3.6179 17 7 2.9529 2.0339 4.7611 18 6 2.7177 2.8671 5.9480 19 6 3.4591 2.2696 7.1456 20 6 3.2307 4.2845 5.6860 21 6 2.6628 0.6206 5.0436 22 6 2.9775 -0.2174 3.8017 23 8 2.2221 0.2794 2.6935 24 1 -0.3633 0.5672 0.8569 25 1 -0.3633 0.4584 -0.9197 26 1 -0.3633 -1.0258 0.0628 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5068 1.9381 -1.3486 30 1 1.7671 3.1668 -1.0838 31 1 1.1800 3.5904 -4.6368 32 1 0.5595 1.8535 1.4359 33 1 1.7039 3.1662 1.0681 34 1 1.0992 2.4291 3.8517 35 1 2.4101 3.5506 3.4103 36 1 1.6495 2.9010 6.1622 37 1 4.5274 2.2357 6.9314 38 1 3.2850 2.8880 8.0261 39 1 3.0937 1.2598 7.3323 40 1 2.7025 4.7101 4.8328 41 1 3.0557 4.9027 6.5664 42 1 4.2989 4.2505 5.4718 43 1 3.2786 0.2821 5.8768 44 1 1.6093 0.5096 5.3003 45 1 4.0418 -0.1491 3.5765 46 1 2.7108 -1.2578 3.9875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080746392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:22 Heat of formation + Delta-G solvation = -55.343623 kcal Electronic energy + Delta-G solvation = -22202.507482 eV Core-core repulsion = 19126.499628 eV Total energy + Delta-G solvation = -3076.007854 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92562 -38.83951 -37.41446 -34.75956 -33.25682 -32.80627 -30.98008 -29.57479 -28.09225 -27.61677 -25.49208 -24.98214 -23.70679 -21.84666 -21.11764 -20.64516 -18.33808 -17.65052 -17.53507 -16.91643 -16.59586 -16.00190 -15.88762 -15.55286 -15.53109 -15.17480 -14.66211 -14.52278 -14.40260 -13.78162 -13.42238 -13.19136 -13.13138 -12.88783 -12.84874 -12.79948 -12.73244 -12.54818 -12.46000 -12.34694 -12.13896 -12.00459 -11.81083 -11.56425 -11.48681 -11.36718 -11.09884 -10.57508 -10.37172 -9.34882 -8.86275 -8.16451 -6.25150 1.41244 1.41862 1.55715 2.42421 2.72167 2.86158 3.15079 3.38450 3.88993 3.99239 4.02687 4.08049 4.17514 4.19297 4.33086 4.37951 4.41185 4.44371 4.55782 4.60256 4.64505 4.70099 4.78047 4.81502 4.82619 4.87598 4.94954 4.96082 4.99378 5.07354 5.09516 5.20614 5.30749 5.33748 5.38691 5.39417 5.56471 5.72878 5.98582 6.09631 6.12926 6.32184 6.49011 6.71590 6.90975 7.43618 8.94188 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.029169 B = 0.004023 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.699483 B = 6958.907085 C = 7338.887715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.061 3.939 3 N -0.539 5.539 4 C 0.202 3.798 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.058 3.942 14 C 0.116 3.884 15 H 0.056 0.944 16 C 0.034 3.966 17 N -0.540 5.540 18 C 0.072 3.928 19 C -0.143 4.143 20 C -0.144 4.144 21 C 0.020 3.980 22 C 0.056 3.944 23 O -0.389 6.389 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.097 0.903 29 H -0.023 1.023 30 H 0.001 0.999 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.090 0.910 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.108 0.892 44 H 0.036 0.964 45 H 0.052 0.948 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 -3.415 22.116 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.067 4.067 3 N -0.262 5.262 4 C 0.076 3.924 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.204 1.204 13 C -0.071 4.071 14 C 0.057 3.943 15 H 0.074 0.926 16 C -0.095 4.095 17 N -0.266 5.266 18 C -0.035 4.035 19 C -0.201 4.201 20 C -0.201 4.201 21 C -0.108 4.108 22 C -0.021 4.021 23 O -0.308 6.308 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.114 0.886 29 H -0.006 1.006 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.189 -3.380 21.769 22.259 hybrid contribution -1.408 0.240 -0.848 1.661 sum 1.781 -3.140 20.920 21.229 Atomic orbital electron populations 1.22217 0.98811 1.01914 1.00262 1.22115 0.92625 0.90157 1.01797 1.62179 1.59587 1.02855 1.01578 1.19487 0.92919 0.92485 0.87543 1.21482 1.24291 1.16440 0.93194 0.92469 1.25865 0.96475 0.95270 1.02064 1.70089 1.37792 1.24733 1.25017 0.85377 0.78422 0.78421 0.78656 1.18957 1.20441 1.20377 1.22138 0.97028 0.98005 0.89888 1.21959 0.98593 0.81474 0.92231 0.92642 1.22643 0.95590 1.00077 0.91210 1.62292 1.55894 1.02870 1.05548 1.21739 0.97975 0.93878 0.89940 1.21910 1.00818 1.01137 0.96216 1.21855 1.01710 0.94654 1.01923 1.22869 1.00084 0.88451 0.99399 1.22824 0.95953 0.98327 0.84948 1.88002 1.66416 1.25983 1.50408 0.92777 0.95034 0.91146 0.93290 0.88554 1.00584 0.98094 0.92817 0.94184 0.90825 0.94558 0.89208 0.94567 0.91967 0.90758 0.91920 0.93319 0.90645 0.92211 0.87396 0.94546 0.92922 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.60 9.30 71.98 0.67 -5.93 16 2 C 0.06 2.51 5.71 86.31 0.49 3.00 16 3 N -0.54 -24.37 4.58 -900.80 -4.13 -28.49 16 4 C 0.20 11.03 4.58 85.56 0.39 11.42 16 5 C -0.52 -30.17 8.64 25.60 0.22 -29.95 16 6 H 0.06 3.34 7.35 -2.91 -0.02 3.31 16 7 C 0.00 0.04 5.46 84.65 0.46 0.50 16 8 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 9 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.06 2.18 4.71 86.30 0.41 2.59 16 14 C 0.12 3.65 3.02 30.63 0.09 3.74 16 15 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 16 C 0.03 0.86 4.70 86.32 0.41 1.27 16 17 N -0.54 -11.88 4.59 -869.98 -4.00 -15.87 16 18 C 0.07 1.28 2.68 44.92 0.12 1.40 16 19 C -0.14 -1.91 8.67 71.98 0.62 -1.29 16 20 C -0.14 -2.42 9.10 71.98 0.65 -1.76 16 21 C 0.02 0.38 5.11 86.31 0.44 0.82 16 22 C 0.06 1.26 7.01 72.01 0.50 1.76 16 23 O -0.39 -11.77 7.68 -148.98 -1.14 -12.92 16 24 H 0.05 1.95 6.00 -2.39 -0.01 1.93 16 25 H 0.03 1.37 6.37 -2.39 -0.02 1.35 16 26 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 2.20 7.15 -2.39 -0.02 2.19 16 28 H 0.10 3.63 5.43 -2.38 -0.01 3.61 16 29 H -0.02 -1.36 5.88 -2.39 -0.01 -1.37 16 30 H 0.00 0.06 7.68 -2.39 -0.02 0.04 16 31 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 32 H 0.04 1.48 5.68 -2.39 -0.01 1.47 16 33 H 0.07 2.78 7.62 -2.39 -0.02 2.76 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 2.24 6.33 -2.39 -0.02 2.23 16 36 H 0.04 0.67 8.13 -2.39 -0.02 0.65 16 37 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.76 6.26 -2.39 -0.01 0.74 16 40 H 0.05 0.90 6.47 -2.39 -0.02 0.88 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.11 1.62 6.05 -2.39 -0.01 1.61 16 44 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.11 2.02 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -65.62 341.84 -0.54 -66.16 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.93 Total: 12.99 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 5.49 Total: -12.43 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -7.84 Total: -101.33 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.14 Total: -12.92 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -65.62 -0.54 -66.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080746392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.813 kcal (2) G-P(sol) polarization free energy of solvation -65.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds