Wall clock time and date at job start Mon Mar 30 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48497 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46729 * 299.99997 * 3 2 1 6 6 H 1.48501 * 109.47069 * 59.99677 * 3 2 1 7 7 C 1.40132 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.46183 * 119.99709 * 359.97438 * 7 2 1 10 10 O 1.21725 * 120.00267 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99872 * 180.02562 * 9 7 2 12 12 C 1.39099 * 119.99948 * 175.17617 * 11 9 7 13 13 C 1.39328 * 120.07714 * 185.12462 * 12 11 9 14 14 N 1.31964 * 119.90144 * 179.77643 * 13 12 11 15 15 C 1.32321 * 120.07112 * 0.49992 * 14 13 12 16 16 Br 1.89099 * 119.91961 * 179.75467 * 15 14 13 17 17 C 1.38404 * 120.15966 * 359.72994 * 15 14 13 18 18 N 1.32157 * 120.09339 * 0.02818 * 17 15 14 19 19 H 0.96991 * 119.99975 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99560 * 354.89130 * 11 9 7 21 21 H 1.08000 * 120.04983 * 0.02562 * 13 12 11 22 22 H 1.08001 * 119.95164 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3965 1.2125 7 6 2.0071 -1.2136 0.0005 8 1 3.0871 -1.2135 0.0010 9 6 1.2761 -2.4795 0.0017 10 8 0.0589 -2.4796 0.0017 11 7 1.9500 -3.6468 0.0027 12 6 1.2582 -4.8492 0.1051 13 6 1.9569 -6.0497 0.2138 14 7 1.2970 -7.1880 0.3152 15 6 -0.0261 -7.1907 0.3037 16 35 -0.9673 -8.8250 0.4422 17 6 -0.7229 -6.0002 0.1910 18 7 -0.0687 -4.8560 0.0939 19 1 -0.4850 0.8400 0.0004 20 1 2.9171 -3.6484 -0.0721 21 1 3.0368 -6.0483 0.2192 22 1 -1.8029 -6.0063 0.1815 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083368915.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:39 Heat of formation + Delta-G solvation = 22.474265 kcal Electronic energy + Delta-G solvation = -12772.939829 eV Core-core repulsion = 10181.996507 eV Total energy + Delta-G solvation = -2590.943322 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 270.970 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.72102 -37.69331 -34.28163 -33.41594 -32.62681 -31.53056 -28.87353 -26.52066 -24.55149 -23.23563 -20.34208 -18.41173 -16.85873 -16.46464 -16.17486 -15.41750 -14.89564 -14.25470 -14.01230 -13.03992 -12.78646 -12.53329 -11.46550 -11.42135 -11.10244 -11.06986 -10.78961 -10.54761 -10.39582 -10.35667 -9.70370 -9.03899 -8.89273 -7.71228 -7.64227 -6.45240 -4.95225 1.08346 1.51593 1.57672 3.00003 3.07977 3.12634 3.71072 3.93755 4.03682 4.41133 4.62613 4.69683 4.95387 5.36623 5.52884 5.68974 6.28874 7.11381 7.17348 7.50032 7.62467 7.89306 8.17181 8.71893 8.98472 10.24514 10.43871 Molecular weight = 270.97amu Principal moments of inertia in cm(-1) A = 0.081966 B = 0.004243 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.521405 B = 6597.252690 C = 6924.272486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.084 3.916 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.523 3.477 10 O -0.507 6.507 11 N -0.655 5.655 12 C 0.361 3.639 13 C -0.005 4.005 14 N -0.389 5.389 15 C -0.014 4.014 16 Br -0.021 7.021 17 C 0.136 3.864 18 N -0.425 5.425 19 H 0.274 0.726 20 H 0.405 0.595 21 H 0.170 0.830 22 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 -12.443 0.534 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.328 3.672 10 O -0.382 6.382 11 N -0.297 5.297 12 C 0.122 3.878 13 C -0.177 4.177 14 N -0.104 5.104 15 C -0.233 4.233 16 Br 0.061 6.939 17 C -0.030 4.030 18 N -0.146 5.146 19 H 0.085 0.915 20 H 0.240 0.760 21 H 0.187 0.813 22 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.123 -12.699 0.590 12.714 hybrid contribution 1.222 1.067 -0.048 1.623 sum 1.345 -11.632 0.542 11.722 Atomic orbital electron populations 1.69981 1.07204 1.28055 1.33061 1.25760 0.94769 1.00646 0.92569 0.86164 0.80371 0.80946 0.78493 1.18550 1.19891 1.19903 1.20875 0.93904 0.88548 1.53686 0.90672 1.18732 0.88086 0.81658 0.78769 1.90766 1.12911 1.84490 1.50080 1.44882 1.10416 1.03727 1.70699 1.20068 0.89924 0.88425 0.89409 1.23135 1.01018 0.86725 1.06796 1.67852 1.07260 1.28896 1.06405 1.23404 0.92964 0.92811 1.14127 1.96648 1.71564 1.28208 1.97484 1.23742 1.01652 0.86049 0.91518 1.69060 1.06585 1.25719 1.13225 0.91507 0.75981 0.81318 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.34 11.82 55.55 0.66 -20.68 14 2 C 0.08 2.19 5.50 -17.35 -0.10 2.09 14 3 Si 0.92 18.73 29.56 -169.99 -5.02 13.70 14 4 H -0.26 -5.12 7.11 56.52 0.40 -4.71 14 5 H -0.27 -5.52 7.11 56.52 0.40 -5.11 14 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 7 C -0.53 -13.88 9.54 -35.68 -0.34 -14.22 14 8 H 0.08 1.74 7.85 -52.49 -0.41 1.32 14 9 C 0.52 13.93 7.70 -13.07 -0.10 13.83 14 10 O -0.51 -15.57 13.30 5.17 0.07 -15.50 14 11 N -0.65 -13.67 5.38 -12.67 -0.07 -13.73 14 12 C 0.36 7.27 7.42 -154.61 -1.15 6.12 14 13 C -0.01 -0.08 11.09 -17.09 -0.19 -0.27 14 14 N -0.39 -6.65 10.46 -11.25 -0.12 -6.77 14 15 C -0.01 -0.23 7.17 -17.28 -0.12 -0.35 14 16 Br -0.02 -0.28 33.89 -68.01 -2.30 -2.59 14 17 C 0.14 2.46 10.96 -17.35 -0.19 2.27 14 18 N -0.42 -9.43 8.06 -12.17 -0.10 -9.53 14 19 H 0.27 6.98 8.29 -40.82 -0.34 6.64 14 20 H 0.40 6.65 8.69 -40.82 -0.35 6.30 14 21 H 0.17 2.09 8.06 -52.49 -0.42 1.67 14 22 H 0.17 2.59 8.06 -52.49 -0.42 2.17 14 LS Contribution 234.10 15.07 3.53 3.53 Total: -1.00 -32.66 234.10 -6.29 -38.95 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -0.75 Total: 3.15 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -2.19 Total: 9.47 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.37 Total: -50.72 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.07 Total: -15.50 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.30 Total: -2.59 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.66 -6.29 -38.95 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083368915.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.429 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds