Wall clock time and date at job start Mon Mar 30 2020 05:15:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30638 * 1
3 3 Si 1.86804 * 120.00196 * 2 1
4 4 H 1.48497 * 109.47265 * 179.97438 * 3 2 1
5 5 H 1.48496 * 109.46729 * 299.99997 * 3 2 1
6 6 H 1.48501 * 109.47069 * 59.99677 * 3 2 1
7 7 C 1.40132 * 120.00121 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99833 * 180.02562 * 7 2 1
9 9 C 1.46183 * 119.99709 * 359.97438 * 7 2 1
10 10 O 1.21725 * 120.00267 * 0.02562 * 9 7 2
11 11 N 1.34780 * 119.99872 * 180.02562 * 9 7 2
12 12 C 1.39099 * 119.99948 * 175.17617 * 11 9 7
13 13 C 1.39328 * 120.07714 * 185.12462 * 12 11 9
14 14 N 1.31964 * 119.90144 * 179.77643 * 13 12 11
15 15 C 1.32321 * 120.07112 * 0.49992 * 14 13 12
16 16 Br 1.89099 * 119.91961 * 179.75467 * 15 14 13
17 17 C 1.38404 * 120.15966 * 359.72994 * 15 14 13
18 18 N 1.32157 * 120.09339 * 0.02818 * 17 15 14
19 19 H 0.96991 * 119.99975 * 359.97438 * 1 2 3
20 20 H 0.96996 * 119.99560 * 354.89130 * 11 9 7
21 21 H 1.08000 * 120.04983 * 0.02562 * 13 12 11
22 22 H 1.08001 * 119.95164 * 179.97438 * 17 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2405 1.6177 0.0000
4 1 3.7004 1.3464 0.0006
5 1 1.8817 2.3964 -1.2125
6 1 1.8817 2.3965 1.2125
7 6 2.0071 -1.2136 0.0005
8 1 3.0871 -1.2135 0.0010
9 6 1.2761 -2.4795 0.0017
10 8 0.0589 -2.4796 0.0017
11 7 1.9500 -3.6468 0.0027
12 6 1.2582 -4.8492 0.1051
13 6 1.9569 -6.0497 0.2138
14 7 1.2970 -7.1880 0.3152
15 6 -0.0261 -7.1907 0.3037
16 35 -0.9673 -8.8250 0.4422
17 6 -0.7229 -6.0002 0.1910
18 7 -0.0687 -4.8560 0.0939
19 1 -0.4850 0.8400 0.0004
20 1 2.9171 -3.6484 -0.0721
21 1 3.0368 -6.0483 0.2192
22 1 -1.8029 -6.0063 0.1815
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000083368915.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:39
Heat of formation + Delta-G solvation = 22.474265 kcal
Electronic energy + Delta-G solvation = -12772.939829 eV
Core-core repulsion = 10181.996507 eV
Total energy + Delta-G solvation = -2590.943322 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 270.970 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-40.72102 -37.69331 -34.28163 -33.41594 -32.62681 -31.53056 -28.87353 -26.52066
-24.55149 -23.23563 -20.34208 -18.41173 -16.85873 -16.46464 -16.17486 -15.41750
-14.89564 -14.25470 -14.01230 -13.03992 -12.78646 -12.53329 -11.46550 -11.42135
-11.10244 -11.06986 -10.78961 -10.54761 -10.39582 -10.35667 -9.70370 -9.03899
-8.89273 -7.71228 -7.64227 -6.45240 -4.95225 1.08346 1.51593 1.57672
3.00003 3.07977 3.12634 3.71072 3.93755 4.03682 4.41133 4.62613
4.69683 4.95387 5.36623 5.52884 5.68974 6.28874 7.11381 7.17348
7.50032 7.62467 7.89306 8.17181 8.71893 8.98472 10.24514 10.43871
Molecular weight = 270.97amu
Principal moments of inertia in cm(-1)
A = 0.081966 B = 0.004243 C = 0.004043
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 341.521405 B = 6597.252690 C = 6924.272486
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.755 5.755
2 C 0.084 3.916
3 Si 0.916 3.084
4 H -0.262 1.262
5 H -0.274 1.274
6 H -0.274 1.274
7 C -0.534 4.534
8 H 0.075 0.925
9 C 0.523 3.477
10 O -0.507 6.507
11 N -0.655 5.655
12 C 0.361 3.639
13 C -0.005 4.005
14 N -0.389 5.389
15 C -0.014 4.014
16 Br -0.021 7.021
17 C 0.136 3.864
18 N -0.425 5.425
19 H 0.274 0.726
20 H 0.405 0.595
21 H 0.170 0.830
22 H 0.170 0.830
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.506 -12.443 0.534 12.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.383 5.383
2 C -0.137 4.137
3 Si 0.740 3.260
4 H -0.185 1.185
5 H -0.199 1.199
6 H -0.199 1.199
7 C -0.570 4.570
8 H 0.093 0.907
9 C 0.328 3.672
10 O -0.382 6.382
11 N -0.297 5.297
12 C 0.122 3.878
13 C -0.177 4.177
14 N -0.104 5.104
15 C -0.233 4.233
16 Br 0.061 6.939
17 C -0.030 4.030
18 N -0.146 5.146
19 H 0.085 0.915
20 H 0.240 0.760
21 H 0.187 0.813
22 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges 0.123 -12.699 0.590 12.714
hybrid contribution 1.222 1.067 -0.048 1.623
sum 1.345 -11.632 0.542 11.722
Atomic orbital electron populations
1.69981 1.07204 1.28055 1.33061 1.25760 0.94769 1.00646 0.92569
0.86164 0.80371 0.80946 0.78493 1.18550 1.19891 1.19903 1.20875
0.93904 0.88548 1.53686 0.90672 1.18732 0.88086 0.81658 0.78769
1.90766 1.12911 1.84490 1.50080 1.44882 1.10416 1.03727 1.70699
1.20068 0.89924 0.88425 0.89409 1.23135 1.01018 0.86725 1.06796
1.67852 1.07260 1.28896 1.06405 1.23404 0.92964 0.92811 1.14127
1.96648 1.71564 1.28208 1.97484 1.23742 1.01652 0.86049 0.91518
1.69060 1.06585 1.25719 1.13225 0.91507 0.75981 0.81318 0.81257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -21.34 11.82 55.55 0.66 -20.68 14
2 C 0.08 2.19 5.50 -17.35 -0.10 2.09 14
3 Si 0.92 18.73 29.56 -169.99 -5.02 13.70 14
4 H -0.26 -5.12 7.11 56.52 0.40 -4.71 14
5 H -0.27 -5.52 7.11 56.52 0.40 -5.11 14
6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14
7 C -0.53 -13.88 9.54 -35.68 -0.34 -14.22 14
8 H 0.08 1.74 7.85 -52.49 -0.41 1.32 14
9 C 0.52 13.93 7.70 -13.07 -0.10 13.83 14
10 O -0.51 -15.57 13.30 5.17 0.07 -15.50 14
11 N -0.65 -13.67 5.38 -12.67 -0.07 -13.73 14
12 C 0.36 7.27 7.42 -154.61 -1.15 6.12 14
13 C -0.01 -0.08 11.09 -17.09 -0.19 -0.27 14
14 N -0.39 -6.65 10.46 -11.25 -0.12 -6.77 14
15 C -0.01 -0.23 7.17 -17.28 -0.12 -0.35 14
16 Br -0.02 -0.28 33.89 -68.01 -2.30 -2.59 14
17 C 0.14 2.46 10.96 -17.35 -0.19 2.27 14
18 N -0.42 -9.43 8.06 -12.17 -0.10 -9.53 14
19 H 0.27 6.98 8.29 -40.82 -0.34 6.64 14
20 H 0.40 6.65 8.69 -40.82 -0.35 6.30 14
21 H 0.17 2.09 8.06 -52.49 -0.42 1.67 14
22 H 0.17 2.59 8.06 -52.49 -0.42 2.17 14
LS Contribution 234.10 15.07 3.53 3.53
Total: -1.00 -32.66 234.10 -6.29 -38.95
By element:
Atomic # 1 Polarization: 3.90 SS G_CDS: -0.75 Total: 3.15 kcal
Atomic # 6 Polarization: 11.66 SS G_CDS: -2.19 Total: 9.47 kcal
Atomic # 7 Polarization: -51.09 SS G_CDS: 0.37 Total: -50.72 kcal
Atomic # 8 Polarization: -15.57 SS G_CDS: 0.07 Total: -15.50 kcal
Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal
Atomic # 35 Polarization: -0.28 SS G_CDS: -2.30 Total: -2.59 kcal
Total LS contribution 3.53 Total: 3.53 kcal
Total: -32.66 -6.29 -38.95 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083368915.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.429 kcal
(2) G-P(sol) polarization free energy of solvation -32.661 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.767 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds