Wall clock time and date at job start Mon Mar 30 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48497 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46729 * 299.99997 * 3 2 1 6 6 H 1.48501 * 109.47069 * 59.99677 * 3 2 1 7 7 C 1.40132 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.46183 * 119.99709 * 359.97438 * 7 2 1 10 10 O 1.21725 * 120.00267 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99872 * 180.02562 * 9 7 2 12 12 C 1.39099 * 119.99948 * 175.17617 * 11 9 7 13 13 C 1.39328 * 120.07714 * 185.12462 * 12 11 9 14 14 N 1.31964 * 119.90144 * 179.77643 * 13 12 11 15 15 C 1.32321 * 120.07112 * 0.49992 * 14 13 12 16 16 Br 1.89099 * 119.91961 * 179.75467 * 15 14 13 17 17 C 1.38404 * 120.15966 * 359.72994 * 15 14 13 18 18 N 1.32157 * 120.09339 * 0.02818 * 17 15 14 19 19 H 0.96991 * 119.99975 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99560 * 354.89130 * 11 9 7 21 21 H 1.08000 * 120.04983 * 0.02562 * 13 12 11 22 22 H 1.08001 * 119.95164 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3965 1.2125 7 6 2.0071 -1.2136 0.0005 8 1 3.0871 -1.2135 0.0010 9 6 1.2761 -2.4795 0.0017 10 8 0.0589 -2.4796 0.0017 11 7 1.9500 -3.6468 0.0027 12 6 1.2582 -4.8492 0.1051 13 6 1.9569 -6.0497 0.2138 14 7 1.2970 -7.1880 0.3152 15 6 -0.0261 -7.1907 0.3037 16 35 -0.9673 -8.8250 0.4422 17 6 -0.7229 -6.0002 0.1910 18 7 -0.0687 -4.8560 0.0939 19 1 -0.4850 0.8400 0.0004 20 1 2.9171 -3.6484 -0.0721 21 1 3.0368 -6.0483 0.2192 22 1 -1.8029 -6.0063 0.1815 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083368915.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:39 Heat of formation + Delta-G solvation = -1.816967 kcal Electronic energy + Delta-G solvation = -12773.993176 eV Core-core repulsion = 10181.996507 eV Total energy + Delta-G solvation = -2591.996669 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 270.970 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.18430 -39.50488 -35.97866 -34.94312 -34.59350 -32.92058 -30.37630 -28.38740 -26.00404 -24.76943 -22.13084 -20.08400 -18.44528 -18.19582 -17.50441 -17.24453 -16.40380 -15.77723 -15.63551 -14.79522 -14.56439 -13.92866 -13.23875 -13.02462 -12.76685 -12.67820 -12.52449 -11.97209 -11.89071 -11.55954 -11.24602 -10.94141 -10.48421 -9.59007 -9.19202 -8.37135 -6.97176 -0.34158 0.09064 0.26687 1.41326 1.42366 1.60397 2.13407 2.30264 2.41987 2.69376 3.27604 3.37147 3.48365 3.57622 3.97296 4.43851 4.89549 5.25359 5.58787 5.78579 6.04199 6.17644 6.62652 6.76749 7.28399 8.32609 8.54977 Molecular weight = 270.97amu Principal moments of inertia in cm(-1) A = 0.081966 B = 0.004243 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.521405 B = 6597.252690 C = 6924.272486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.028 3.972 3 Si 1.003 2.997 4 H -0.241 1.241 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.512 3.488 10 O -0.562 6.562 11 N -0.651 5.651 12 C 0.334 3.666 13 C 0.023 3.977 14 N -0.396 5.396 15 C -0.006 4.006 16 Br 0.017 6.983 17 C 0.123 3.877 18 N -0.478 5.478 19 H 0.278 0.722 20 H 0.425 0.575 21 H 0.215 0.785 22 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -13.178 0.644 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.164 1.164 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.594 4.594 8 H 0.119 0.881 9 C 0.318 3.682 10 O -0.441 6.441 11 N -0.296 5.296 12 C 0.097 3.903 13 C -0.148 4.148 14 N -0.111 5.111 15 C -0.225 4.225 16 Br 0.099 6.901 17 C -0.041 4.041 18 N -0.199 5.199 19 H 0.088 0.912 20 H 0.264 0.736 21 H 0.231 0.769 22 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.001 -13.524 0.703 13.689 hybrid contribution 0.586 1.047 -0.072 1.202 sum 2.587 -12.477 0.631 12.758 Atomic orbital electron populations 1.70152 1.09674 1.29472 1.34887 1.27030 0.95533 1.05113 0.91170 0.84880 0.79547 0.74963 0.78418 1.16407 1.19514 1.19580 1.21461 0.95306 0.88938 1.53660 0.88085 1.19052 0.87714 0.83464 0.77992 1.90720 1.15098 1.85994 1.52323 1.44203 1.11181 1.02926 1.71288 1.20296 0.89803 0.89120 0.91127 1.23680 1.02708 0.84937 1.03476 1.68070 1.07319 1.28747 1.06968 1.23752 0.93155 0.94038 1.11586 1.96685 1.70776 1.25404 1.97247 1.23992 1.02473 0.85664 0.91986 1.68854 1.08410 1.28310 1.14372 0.91166 0.73618 0.76891 0.79623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.45 11.82 21.85 0.26 -47.19 14 2 C 0.03 1.46 5.50 85.33 0.47 1.93 14 3 Si 1.00 38.07 29.56 68.60 2.03 40.10 14 4 H -0.24 -8.27 7.11 99.48 0.71 -7.56 14 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 14 6 H -0.27 -10.04 7.11 99.48 0.71 -9.34 14 7 C -0.56 -29.08 9.54 24.79 0.24 -28.84 14 8 H 0.10 4.53 7.85 -2.91 -0.02 4.50 14 9 C 0.51 27.95 7.70 86.31 0.66 28.62 14 10 O -0.56 -35.98 13.30 -4.43 -0.06 -36.03 14 11 N -0.65 -27.11 5.38 -312.21 -1.68 -28.78 14 12 C 0.33 13.38 7.42 132.99 0.99 14.36 14 13 C 0.02 0.69 11.09 84.94 0.94 1.63 14 14 N -0.40 -12.62 10.46 -189.49 -1.98 -14.60 14 15 C -0.01 -0.20 7.17 84.66 0.61 0.40 14 16 Br 0.02 0.41 33.89 -20.37 -0.69 -0.28 14 17 C 0.12 4.43 10.96 84.68 0.93 5.36 14 18 N -0.48 -21.63 8.06 -192.41 -1.55 -23.18 14 19 H 0.28 14.68 8.29 -92.71 -0.77 13.92 14 20 H 0.42 13.46 8.69 -92.71 -0.81 12.65 14 21 H 0.21 4.43 8.06 -2.91 -0.02 4.41 14 22 H 0.19 5.72 8.06 -2.91 -0.02 5.70 14 Total: -1.00 -73.15 234.10 1.64 -71.52 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.48 Total: 14.99 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 4.83 Total: 23.47 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -4.95 Total: -113.76 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.06 Total: -36.03 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -0.69 Total: -0.28 kcal Total: -73.15 1.64 -71.52 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083368915.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.698 kcal (2) G-P(sol) polarization free energy of solvation -73.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds