Wall clock time and date at job start Mon Mar 30 2020 05:15:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30638 * 1
3 3 Si 1.86804 * 120.00196 * 2 1
4 4 H 1.48497 * 109.47265 * 179.97438 * 3 2 1
5 5 H 1.48496 * 109.46729 * 299.99997 * 3 2 1
6 6 H 1.48501 * 109.47069 * 59.99677 * 3 2 1
7 7 C 1.40132 * 120.00121 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99833 * 180.02562 * 7 2 1
9 9 C 1.46183 * 119.99709 * 359.97438 * 7 2 1
10 10 O 1.21725 * 120.00267 * 0.02562 * 9 7 2
11 11 N 1.34780 * 119.99872 * 180.02562 * 9 7 2
12 12 C 1.39099 * 119.99948 * 175.17617 * 11 9 7
13 13 C 1.39328 * 120.07714 * 185.12462 * 12 11 9
14 14 N 1.31964 * 119.90144 * 179.77643 * 13 12 11
15 15 C 1.32321 * 120.07112 * 0.49992 * 14 13 12
16 16 Br 1.89099 * 119.91961 * 179.75467 * 15 14 13
17 17 C 1.38404 * 120.15966 * 359.72994 * 15 14 13
18 18 N 1.32157 * 120.09339 * 0.02818 * 17 15 14
19 19 H 0.96991 * 119.99975 * 359.97438 * 1 2 3
20 20 H 0.96996 * 119.99560 * 354.89130 * 11 9 7
21 21 H 1.08000 * 120.04983 * 0.02562 * 13 12 11
22 22 H 1.08001 * 119.95164 * 179.97438 * 17 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2405 1.6177 0.0000
4 1 3.7004 1.3464 0.0006
5 1 1.8817 2.3964 -1.2125
6 1 1.8817 2.3965 1.2125
7 6 2.0071 -1.2136 0.0005
8 1 3.0871 -1.2135 0.0010
9 6 1.2761 -2.4795 0.0017
10 8 0.0589 -2.4796 0.0017
11 7 1.9500 -3.6468 0.0027
12 6 1.2582 -4.8492 0.1051
13 6 1.9569 -6.0497 0.2138
14 7 1.2970 -7.1880 0.3152
15 6 -0.0261 -7.1907 0.3037
16 35 -0.9673 -8.8250 0.4422
17 6 -0.7229 -6.0002 0.1910
18 7 -0.0687 -4.8560 0.0939
19 1 -0.4850 0.8400 0.0004
20 1 2.9171 -3.6484 -0.0721
21 1 3.0368 -6.0483 0.2192
22 1 -1.8029 -6.0063 0.1815
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000083368915.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:39
Heat of formation + Delta-G solvation = -1.816967 kcal
Electronic energy + Delta-G solvation = -12773.993176 eV
Core-core repulsion = 10181.996507 eV
Total energy + Delta-G solvation = -2591.996669 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 270.970 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-42.18430 -39.50488 -35.97866 -34.94312 -34.59350 -32.92058 -30.37630 -28.38740
-26.00404 -24.76943 -22.13084 -20.08400 -18.44528 -18.19582 -17.50441 -17.24453
-16.40380 -15.77723 -15.63551 -14.79522 -14.56439 -13.92866 -13.23875 -13.02462
-12.76685 -12.67820 -12.52449 -11.97209 -11.89071 -11.55954 -11.24602 -10.94141
-10.48421 -9.59007 -9.19202 -8.37135 -6.97176 -0.34158 0.09064 0.26687
1.41326 1.42366 1.60397 2.13407 2.30264 2.41987 2.69376 3.27604
3.37147 3.48365 3.57622 3.97296 4.43851 4.89549 5.25359 5.58787
5.78579 6.04199 6.17644 6.62652 6.76749 7.28399 8.32609 8.54977
Molecular weight = 270.97amu
Principal moments of inertia in cm(-1)
A = 0.081966 B = 0.004243 C = 0.004043
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 341.521405 B = 6597.252690 C = 6924.272486
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.813 5.813
2 C 0.028 3.972
3 Si 1.003 2.997
4 H -0.241 1.241
5 H -0.270 1.270
6 H -0.271 1.271
7 C -0.558 4.558
8 H 0.101 0.899
9 C 0.512 3.488
10 O -0.562 6.562
11 N -0.651 5.651
12 C 0.334 3.666
13 C 0.023 3.977
14 N -0.396 5.396
15 C -0.006 4.006
16 Br 0.017 6.983
17 C 0.123 3.877
18 N -0.478 5.478
19 H 0.278 0.722
20 H 0.425 0.575
21 H 0.215 0.785
22 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.351 -13.178 0.644 13.612
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.442 5.442
2 C -0.188 4.188
3 Si 0.822 3.178
4 H -0.164 1.164
5 H -0.195 1.195
6 H -0.196 1.196
7 C -0.594 4.594
8 H 0.119 0.881
9 C 0.318 3.682
10 O -0.441 6.441
11 N -0.296 5.296
12 C 0.097 3.903
13 C -0.148 4.148
14 N -0.111 5.111
15 C -0.225 4.225
16 Br 0.099 6.901
17 C -0.041 4.041
18 N -0.199 5.199
19 H 0.088 0.912
20 H 0.264 0.736
21 H 0.231 0.769
22 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges 2.001 -13.524 0.703 13.689
hybrid contribution 0.586 1.047 -0.072 1.202
sum 2.587 -12.477 0.631 12.758
Atomic orbital electron populations
1.70152 1.09674 1.29472 1.34887 1.27030 0.95533 1.05113 0.91170
0.84880 0.79547 0.74963 0.78418 1.16407 1.19514 1.19580 1.21461
0.95306 0.88938 1.53660 0.88085 1.19052 0.87714 0.83464 0.77992
1.90720 1.15098 1.85994 1.52323 1.44203 1.11181 1.02926 1.71288
1.20296 0.89803 0.89120 0.91127 1.23680 1.02708 0.84937 1.03476
1.68070 1.07319 1.28747 1.06968 1.23752 0.93155 0.94038 1.11586
1.96685 1.70776 1.25404 1.97247 1.23992 1.02473 0.85664 0.91986
1.68854 1.08410 1.28310 1.14372 0.91166 0.73618 0.76891 0.79623
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -47.45 11.82 21.85 0.26 -47.19 14
2 C 0.03 1.46 5.50 85.33 0.47 1.93 14
3 Si 1.00 38.07 29.56 68.60 2.03 40.10 14
4 H -0.24 -8.27 7.11 99.48 0.71 -7.56 14
5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 14
6 H -0.27 -10.04 7.11 99.48 0.71 -9.34 14
7 C -0.56 -29.08 9.54 24.79 0.24 -28.84 14
8 H 0.10 4.53 7.85 -2.91 -0.02 4.50 14
9 C 0.51 27.95 7.70 86.31 0.66 28.62 14
10 O -0.56 -35.98 13.30 -4.43 -0.06 -36.03 14
11 N -0.65 -27.11 5.38 -312.21 -1.68 -28.78 14
12 C 0.33 13.38 7.42 132.99 0.99 14.36 14
13 C 0.02 0.69 11.09 84.94 0.94 1.63 14
14 N -0.40 -12.62 10.46 -189.49 -1.98 -14.60 14
15 C -0.01 -0.20 7.17 84.66 0.61 0.40 14
16 Br 0.02 0.41 33.89 -20.37 -0.69 -0.28 14
17 C 0.12 4.43 10.96 84.68 0.93 5.36 14
18 N -0.48 -21.63 8.06 -192.41 -1.55 -23.18 14
19 H 0.28 14.68 8.29 -92.71 -0.77 13.92 14
20 H 0.42 13.46 8.69 -92.71 -0.81 12.65 14
21 H 0.21 4.43 8.06 -2.91 -0.02 4.41 14
22 H 0.19 5.72 8.06 -2.91 -0.02 5.70 14
Total: -1.00 -73.15 234.10 1.64 -71.52
By element:
Atomic # 1 Polarization: 14.51 SS G_CDS: 0.48 Total: 14.99 kcal
Atomic # 6 Polarization: 18.63 SS G_CDS: 4.83 Total: 23.47 kcal
Atomic # 7 Polarization: -108.81 SS G_CDS: -4.95 Total: -113.76 kcal
Atomic # 8 Polarization: -35.98 SS G_CDS: -0.06 Total: -36.03 kcal
Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal
Atomic # 35 Polarization: 0.41 SS G_CDS: -0.69 Total: -0.28 kcal
Total: -73.15 1.64 -71.52 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083368915.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.698 kcal
(2) G-P(sol) polarization free energy of solvation -73.153 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.817 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds