Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48494 * 109.47533 * 270.00168 * 3 2 1 5 5 H 1.48498 * 109.47096 * 30.00462 * 3 2 1 6 6 H 1.48500 * 109.46959 * 149.99918 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.42905 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.36210 * 116.99760 * 180.02562 * 13 12 10 15 15 C 1.34126 * 122.49832 * 0.02562 * 14 13 12 16 16 S 1.70602 * 110.98294 * 180.02562 * 15 14 13 17 17 C 1.75813 * 91.62324 * 359.97438 * 16 15 14 18 18 C 1.46350 * 125.43367 * 179.97438 * 17 16 15 19 19 O 1.21633 * 120.00402 * 180.02562 * 18 17 16 20 20 O 1.34906 * 119.99736 * 0.02641 * 18 17 16 21 21 C 1.36848 * 109.13431 * 359.74254 * 17 16 15 22 22 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 25 25 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 26 26 H 1.08008 * 124.50663 * 0.02562 * 15 14 13 27 27 H 0.96696 * 114.00189 * 179.97438 * 20 18 17 28 28 H 1.08005 * 123.37390 * 180.24327 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1727 -5.9490 -0.0027 14 6 1.6521 -7.2077 -0.0038 15 6 0.3314 -7.4413 -0.0049 16 16 0.0072 -9.1162 -0.0054 17 6 1.7231 -9.4991 -0.0048 18 6 2.2916 -10.8476 -0.0043 19 8 3.4984 -10.9990 -0.0034 20 8 1.4769 -11.9230 -0.0048 21 6 2.4424 -8.3349 -0.0101 22 1 -0.4851 0.8400 0.0004 23 1 0.3535 -2.3906 -0.0005 24 1 0.6170 -4.9201 -0.8920 25 1 0.6177 -4.9213 0.8880 26 1 -0.4262 -6.6714 -0.0054 27 1 1.9435 -12.7699 -0.0049 28 1 3.5220 -8.3036 -0.0146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085656538.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = -127.490911 kcal Electronic energy + Delta-G solvation = -17229.398203 eV Core-core repulsion = 13951.963638 eV Total energy + Delta-G solvation = -3277.434565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.039 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48627 -39.79660 -38.05977 -36.48856 -35.67788 -34.02240 -31.40966 -29.91526 -28.51352 -25.72801 -24.48467 -22.19031 -19.77024 -19.52953 -19.15388 -18.11135 -17.84403 -16.95466 -16.30854 -16.12867 -15.78409 -15.29231 -14.71147 -14.26568 -13.93758 -13.71912 -13.70202 -13.13811 -12.64135 -12.50078 -11.90010 -11.80556 -11.63696 -11.21576 -11.17422 -10.97210 -10.76592 -10.45792 -10.32370 -9.63229 -9.17542 -8.54836 -8.12244 -8.09543 -6.53024 -3.94787 0.10112 1.22448 1.71166 2.06561 2.60668 2.72151 3.11725 3.21269 3.25089 3.37927 3.70447 4.13772 4.73237 4.84764 4.96721 5.10296 5.10827 5.30238 5.48609 5.59462 5.76565 5.92551 6.01911 6.05374 7.31066 7.45464 7.47930 7.91514 8.45879 9.04909 9.36239 9.86621 10.64266 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.055942 B = 0.003207 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.398360 B = 8728.211642 C = 9213.464202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.573 6.573 12 C 0.053 3.947 13 O -0.270 6.270 14 C 0.106 3.894 15 C -0.338 4.338 16 S 0.261 5.739 17 C -0.254 4.254 18 C 0.558 3.442 19 O -0.502 6.502 20 O -0.503 6.503 21 C -0.043 4.043 22 H 0.274 0.726 23 H 0.394 0.606 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.178 0.822 27 H 0.415 0.585 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -19.007 -0.012 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.224 3.776 11 O -0.456 6.456 12 C -0.026 4.026 13 O -0.183 6.183 14 C 0.049 3.951 15 C -0.476 4.476 16 S 0.528 5.472 17 C -0.372 4.372 18 C 0.401 3.599 19 O -0.391 6.391 20 O -0.314 6.314 21 C -0.080 4.080 22 H 0.084 0.916 23 H 0.227 0.773 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.195 0.805 27 H 0.273 0.727 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.418 -19.276 -0.006 20.023 hybrid contribution 0.991 1.389 -0.011 1.706 sum -4.427 -17.887 -0.017 18.427 Atomic orbital electron populations 1.69603 1.06000 1.28482 1.49850 1.25299 0.95693 0.99862 0.96869 0.85793 0.79256 0.80373 0.78522 1.20247 1.20802 1.19264 1.19734 0.93515 0.81767 1.48103 0.87621 1.41689 1.09260 1.04095 1.64048 1.19278 0.88348 0.84014 0.85961 1.90580 1.13467 1.86704 1.54889 1.22525 0.91828 0.86070 1.02187 1.86280 1.33724 1.09953 1.88315 1.17606 0.90257 0.86849 1.00412 1.25413 1.00220 1.03994 1.17926 1.82930 1.01200 0.95449 1.67635 1.23126 0.99223 0.93850 1.21032 1.19204 0.84163 0.84149 0.72433 1.90983 1.15324 1.86723 1.46087 1.84997 1.41941 1.18193 1.86290 1.20011 1.02214 0.87650 0.98099 0.91648 0.77264 0.90400 0.90404 0.80496 0.72715 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.67 13.05 55.50 0.72 -22.95 15 2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 15 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 15 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 15 8 H 0.11 3.04 7.16 -52.48 -0.38 2.67 15 9 N -0.55 -13.68 5.29 -10.96 -0.06 -13.74 15 10 C 0.44 10.43 7.86 -10.99 -0.09 10.34 15 11 O -0.57 -16.11 16.08 -14.37 -0.23 -16.34 15 12 C 0.05 0.93 5.34 36.01 0.19 1.12 15 13 O -0.27 -5.00 9.74 -40.32 -0.39 -5.39 15 14 C 0.11 1.56 6.61 -41.24 -0.27 1.28 15 15 C -0.34 -3.98 9.81 29.28 0.29 -3.69 15 16 S 0.26 2.53 22.92 -107.50 -2.46 0.06 15 17 C -0.25 -3.00 6.45 -36.82 -0.24 -3.24 15 18 C 0.56 6.21 8.27 33.99 0.28 6.49 15 19 O -0.50 -6.99 17.57 -19.37 -0.34 -7.33 15 20 O -0.50 -3.80 13.40 -41.06 -0.55 -4.35 15 21 C -0.04 -0.59 10.00 -40.29 -0.40 -0.99 15 22 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 23 H 0.39 9.06 7.90 -40.82 -0.32 8.74 15 24 H 0.08 1.16 7.84 -51.93 -0.41 0.75 15 25 H 0.08 1.16 7.85 -51.93 -0.41 0.75 15 26 H 0.18 1.78 6.96 -52.48 -0.37 1.42 15 27 H 0.41 1.20 8.98 45.56 0.41 1.61 15 28 H 0.17 2.26 8.06 -52.48 -0.42 1.83 15 LS Contribution 281.48 15.07 4.24 4.24 Total: -1.00 -33.76 281.48 -5.60 -39.36 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -1.03 Total: 7.43 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.48 Total: 3.46 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.67 Total: -36.69 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.51 Total: -33.40 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.46 Total: 0.06 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.76 -5.60 -39.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085656538.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.134 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds