Wall clock time and date at job start Mon Mar 30 2020 05:34:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31408 * 1
3 3 Si 1.86803 * 119.99611 * 2 1
4 4 H 1.48494 * 109.47533 * 270.00168 * 3 2 1
5 5 H 1.48498 * 109.47096 * 30.00462 * 3 2 1
6 6 H 1.48500 * 109.46959 * 149.99918 * 3 2 1
7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1
9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1
10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7
12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7
13 13 O 1.42905 * 109.46972 * 180.02562 * 12 10 9
14 14 C 1.36210 * 116.99760 * 180.02562 * 13 12 10
15 15 C 1.34126 * 122.49832 * 0.02562 * 14 13 12
16 16 S 1.70602 * 110.98294 * 180.02562 * 15 14 13
17 17 C 1.75813 * 91.62324 * 359.97438 * 16 15 14
18 18 C 1.46350 * 125.43367 * 179.97438 * 17 16 15
19 19 O 1.21633 * 120.00402 * 180.02562 * 18 17 16
20 20 O 1.34906 * 119.99736 * 0.02641 * 18 17 16
21 21 C 1.36848 * 109.13431 * 359.74254 * 17 16 15
22 22 H 0.97002 * 120.00294 * 359.97438 * 1 2 3
23 23 H 0.96996 * 120.00211 * 0.02562 * 9 7 2
24 24 H 1.09000 * 109.47247 * 60.00371 * 12 10 9
25 25 H 1.09001 * 109.47358 * 299.99798 * 12 10 9
26 26 H 1.08008 * 124.50663 * 0.02562 * 15 14 13
27 27 H 0.96696 * 114.00189 * 179.97438 * 20 18 17
28 28 H 1.08005 * 123.37390 * 180.24327 * 21 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 2.4955 2.0466 -1.4000
5 1 1.4454 2.6527 0.7001
6 1 3.5455 1.4403 0.7001
7 6 2.0089 -1.2033 -0.0005
8 1 3.0890 -1.2032 -0.0010
9 7 1.3235 -2.3906 -0.0005
10 6 1.9974 -3.5578 -0.0016
11 8 3.2104 -3.5577 -0.0021
12 6 1.2440 -4.8629 -0.0022
13 8 2.1727 -5.9490 -0.0027
14 6 1.6521 -7.2077 -0.0038
15 6 0.3314 -7.4413 -0.0049
16 16 0.0072 -9.1162 -0.0054
17 6 1.7231 -9.4991 -0.0048
18 6 2.2916 -10.8476 -0.0043
19 8 3.4984 -10.9990 -0.0034
20 8 1.4769 -11.9230 -0.0048
21 6 2.4424 -8.3349 -0.0101
22 1 -0.4851 0.8400 0.0004
23 1 0.3535 -2.3906 -0.0005
24 1 0.6170 -4.9201 -0.8920
25 1 0.6177 -4.9213 0.8880
26 1 -0.4262 -6.6714 -0.0054
27 1 1.9435 -12.7699 -0.0049
28 1 3.5220 -8.3036 -0.0146
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000085656538.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:34:46
Heat of formation + Delta-G solvation = -127.490911 kcal
Electronic energy + Delta-G solvation = -17229.398203 eV
Core-core repulsion = 13951.963638 eV
Total energy + Delta-G solvation = -3277.434565 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 271.039 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.48627 -39.79660 -38.05977 -36.48856 -35.67788 -34.02240 -31.40966 -29.91526
-28.51352 -25.72801 -24.48467 -22.19031 -19.77024 -19.52953 -19.15388 -18.11135
-17.84403 -16.95466 -16.30854 -16.12867 -15.78409 -15.29231 -14.71147 -14.26568
-13.93758 -13.71912 -13.70202 -13.13811 -12.64135 -12.50078 -11.90010 -11.80556
-11.63696 -11.21576 -11.17422 -10.97210 -10.76592 -10.45792 -10.32370 -9.63229
-9.17542 -8.54836 -8.12244 -8.09543 -6.53024 -3.94787 0.10112 1.22448
1.71166 2.06561 2.60668 2.72151 3.11725 3.21269 3.25089 3.37927
3.70447 4.13772 4.73237 4.84764 4.96721 5.10296 5.10827 5.30238
5.48609 5.59462 5.76565 5.92551 6.01911 6.05374 7.31066 7.45464
7.47930 7.91514 8.45879 9.04909 9.36239 9.86621 10.64266
Molecular weight = 271.04amu
Principal moments of inertia in cm(-1)
A = 0.055942 B = 0.003207 C = 0.003038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 500.398360 B = 8728.211642 C = 9213.464202
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.025 3.975
3 Si 0.934 3.066
4 H -0.277 1.277
5 H -0.282 1.282
6 H -0.268 1.268
7 C -0.302 4.302
8 H 0.106 0.894
9 N -0.553 5.553
10 C 0.439 3.561
11 O -0.573 6.573
12 C 0.053 3.947
13 O -0.270 6.270
14 C 0.106 3.894
15 C -0.338 4.338
16 S 0.261 5.739
17 C -0.254 4.254
18 C 0.558 3.442
19 O -0.502 6.502
20 O -0.503 6.503
21 C -0.043 4.043
22 H 0.274 0.726
23 H 0.394 0.606
24 H 0.078 0.922
25 H 0.078 0.922
26 H 0.178 0.822
27 H 0.415 0.585
28 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.047 -19.007 -0.012 19.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.177 4.177
3 Si 0.761 3.239
4 H -0.202 1.202
5 H -0.208 1.208
6 H -0.193 1.193
7 C -0.431 4.431
8 H 0.124 0.876
9 N -0.191 5.191
10 C 0.224 3.776
11 O -0.456 6.456
12 C -0.026 4.026
13 O -0.183 6.183
14 C 0.049 3.951
15 C -0.476 4.476
16 S 0.528 5.472
17 C -0.372 4.372
18 C 0.401 3.599
19 O -0.391 6.391
20 O -0.314 6.314
21 C -0.080 4.080
22 H 0.084 0.916
23 H 0.227 0.773
24 H 0.096 0.904
25 H 0.096 0.904
26 H 0.195 0.805
27 H 0.273 0.727
28 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -5.418 -19.276 -0.006 20.023
hybrid contribution 0.991 1.389 -0.011 1.706
sum -4.427 -17.887 -0.017 18.427
Atomic orbital electron populations
1.69603 1.06000 1.28482 1.49850 1.25299 0.95693 0.99862 0.96869
0.85793 0.79256 0.80373 0.78522 1.20247 1.20802 1.19264 1.19734
0.93515 0.81767 1.48103 0.87621 1.41689 1.09260 1.04095 1.64048
1.19278 0.88348 0.84014 0.85961 1.90580 1.13467 1.86704 1.54889
1.22525 0.91828 0.86070 1.02187 1.86280 1.33724 1.09953 1.88315
1.17606 0.90257 0.86849 1.00412 1.25413 1.00220 1.03994 1.17926
1.82930 1.01200 0.95449 1.67635 1.23126 0.99223 0.93850 1.21032
1.19204 0.84163 0.84149 0.72433 1.90983 1.15324 1.86723 1.46087
1.84997 1.41941 1.18193 1.86290 1.20011 1.02214 0.87650 0.98099
0.91648 0.77264 0.90400 0.90404 0.80496 0.72715 0.81621
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.67 13.05 55.50 0.72 -22.95 15
2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 15
3 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 15
4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15
5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15
6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15
7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 15
8 H 0.11 3.04 7.16 -52.48 -0.38 2.67 15
9 N -0.55 -13.68 5.29 -10.96 -0.06 -13.74 15
10 C 0.44 10.43 7.86 -10.99 -0.09 10.34 15
11 O -0.57 -16.11 16.08 -14.37 -0.23 -16.34 15
12 C 0.05 0.93 5.34 36.01 0.19 1.12 15
13 O -0.27 -5.00 9.74 -40.32 -0.39 -5.39 15
14 C 0.11 1.56 6.61 -41.24 -0.27 1.28 15
15 C -0.34 -3.98 9.81 29.28 0.29 -3.69 15
16 S 0.26 2.53 22.92 -107.50 -2.46 0.06 15
17 C -0.25 -3.00 6.45 -36.82 -0.24 -3.24 15
18 C 0.56 6.21 8.27 33.99 0.28 6.49 15
19 O -0.50 -6.99 17.57 -19.37 -0.34 -7.33 15
20 O -0.50 -3.80 13.40 -41.06 -0.55 -4.35 15
21 C -0.04 -0.59 10.00 -40.29 -0.40 -0.99 15
22 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15
23 H 0.39 9.06 7.90 -40.82 -0.32 8.74 15
24 H 0.08 1.16 7.84 -51.93 -0.41 0.75 15
25 H 0.08 1.16 7.85 -51.93 -0.41 0.75 15
26 H 0.18 1.78 6.96 -52.48 -0.37 1.42 15
27 H 0.41 1.20 8.98 45.56 0.41 1.61 15
28 H 0.17 2.26 8.06 -52.48 -0.42 1.83 15
LS Contribution 281.48 15.07 4.24 4.24
Total: -1.00 -33.76 281.48 -5.60 -39.36
By element:
Atomic # 1 Polarization: 8.46 SS G_CDS: -1.03 Total: 7.43 kcal
Atomic # 6 Polarization: 3.94 SS G_CDS: -0.48 Total: 3.46 kcal
Atomic # 7 Polarization: -37.36 SS G_CDS: 0.67 Total: -36.69 kcal
Atomic # 8 Polarization: -31.89 SS G_CDS: -1.51 Total: -33.40 kcal
Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal
Atomic # 16 Polarization: 2.53 SS G_CDS: -2.46 Total: 0.06 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -33.76 -5.60 -39.36 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085656538.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -88.134 kcal
(2) G-P(sol) polarization free energy of solvation -33.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.491 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds