Wall clock time and date at job start Mon Mar 30 2020 05:34:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31408 * 1
3 3 Si 1.86803 * 119.99611 * 2 1
4 4 H 1.48494 * 109.47533 * 270.00168 * 3 2 1
5 5 H 1.48498 * 109.47096 * 30.00462 * 3 2 1
6 6 H 1.48500 * 109.46959 * 149.99918 * 3 2 1
7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1
9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1
10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7
12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7
13 13 O 1.42905 * 109.46972 * 180.02562 * 12 10 9
14 14 C 1.36210 * 116.99760 * 180.02562 * 13 12 10
15 15 C 1.34126 * 122.49832 * 0.02562 * 14 13 12
16 16 S 1.70602 * 110.98294 * 180.02562 * 15 14 13
17 17 C 1.75813 * 91.62324 * 359.97438 * 16 15 14
18 18 C 1.46350 * 125.43367 * 179.97438 * 17 16 15
19 19 O 1.21633 * 120.00402 * 180.02562 * 18 17 16
20 20 O 1.34906 * 119.99736 * 0.02641 * 18 17 16
21 21 C 1.36848 * 109.13431 * 359.74254 * 17 16 15
22 22 H 0.97002 * 120.00294 * 359.97438 * 1 2 3
23 23 H 0.96996 * 120.00211 * 0.02562 * 9 7 2
24 24 H 1.09000 * 109.47247 * 60.00371 * 12 10 9
25 25 H 1.09001 * 109.47358 * 299.99798 * 12 10 9
26 26 H 1.08008 * 124.50663 * 0.02562 * 15 14 13
27 27 H 0.96696 * 114.00189 * 179.97438 * 20 18 17
28 28 H 1.08005 * 123.37390 * 180.24327 * 21 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 2.4955 2.0466 -1.4000
5 1 1.4454 2.6527 0.7001
6 1 3.5455 1.4403 0.7001
7 6 2.0089 -1.2033 -0.0005
8 1 3.0890 -1.2032 -0.0010
9 7 1.3235 -2.3906 -0.0005
10 6 1.9974 -3.5578 -0.0016
11 8 3.2104 -3.5577 -0.0021
12 6 1.2440 -4.8629 -0.0022
13 8 2.1727 -5.9490 -0.0027
14 6 1.6521 -7.2077 -0.0038
15 6 0.3314 -7.4413 -0.0049
16 16 0.0072 -9.1162 -0.0054
17 6 1.7231 -9.4991 -0.0048
18 6 2.2916 -10.8476 -0.0043
19 8 3.4984 -10.9990 -0.0034
20 8 1.4769 -11.9230 -0.0048
21 6 2.4424 -8.3349 -0.0101
22 1 -0.4851 0.8400 0.0004
23 1 0.3535 -2.3906 -0.0005
24 1 0.6170 -4.9201 -0.8920
25 1 0.6177 -4.9213 0.8880
26 1 -0.4262 -6.6714 -0.0054
27 1 1.9435 -12.7699 -0.0049
28 1 3.5220 -8.3036 -0.0146
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000085656538.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:34:46
Heat of formation + Delta-G solvation = -152.765135 kcal
Electronic energy + Delta-G solvation = -17230.494175 eV
Core-core repulsion = 13951.963638 eV
Total energy + Delta-G solvation = -3278.530537 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 271.039 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.41598 -40.96074 -39.79978 -37.35733 -36.77578 -36.00957 -33.41042 -30.88272
-29.99008 -27.04294 -26.05761 -23.19257 -21.45429 -20.55388 -20.16720 -19.99558
-18.70563 -18.08816 -17.83863 -17.32761 -16.77614 -16.75941 -16.29272 -15.86262
-15.27395 -15.17096 -14.88681 -14.27407 -13.96444 -13.78328 -13.56029 -13.03340
-12.95696 -12.70577 -12.48168 -12.14316 -12.12328 -11.98956 -11.88766 -11.58628
-10.49358 -10.11164 -10.08334 -9.05173 -8.53003 -6.02904 -0.82571 0.36160
0.78731 1.11028 1.35761 1.42130 1.53657 1.71157 1.77617 1.89336
2.16231 2.39363 3.12993 3.26092 3.83992 3.96114 4.12819 4.15206
4.23104 4.29083 4.59954 4.75455 4.99194 5.36597 5.37379 5.87117
6.18452 6.51290 6.78483 7.04092 7.41379 7.96977 8.63819
Molecular weight = 271.04amu
Principal moments of inertia in cm(-1)
A = 0.055942 B = 0.003207 C = 0.003038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 500.398360 B = 8728.211642 C = 9213.464202
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C -0.006 4.006
3 Si 0.995 3.005
4 H -0.270 1.270
5 H -0.268 1.268
6 H -0.274 1.274
7 C -0.340 4.340
8 H 0.079 0.921
9 N -0.557 5.557
10 C 0.432 3.568
11 O -0.626 6.626
12 C 0.067 3.933
13 O -0.309 6.309
14 C 0.074 3.926
15 C -0.332 4.332
16 S 0.357 5.643
17 C -0.269 4.269
18 C 0.565 3.435
19 O -0.537 6.537
20 O -0.489 6.489
21 C -0.069 4.069
22 H 0.281 0.719
23 H 0.402 0.598
24 H 0.110 0.890
25 H 0.110 0.890
26 H 0.200 0.800
27 H 0.437 0.563
28 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.529 -19.955 -0.029 21.328
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.207 4.207
3 Si 0.818 3.182
4 H -0.195 1.195
5 H -0.192 1.192
6 H -0.199 1.199
7 C -0.469 4.469
8 H 0.097 0.903
9 N -0.195 5.195
10 C 0.219 3.781
11 O -0.513 6.513
12 C -0.012 4.012
13 O -0.223 6.223
14 C 0.018 3.982
15 C -0.470 4.470
16 S 0.625 5.375
17 C -0.388 4.388
18 C 0.409 3.591
19 O -0.430 6.430
20 O -0.302 6.302
21 C -0.105 4.105
22 H 0.091 0.909
23 H 0.237 0.763
24 H 0.128 0.872
25 H 0.128 0.872
26 H 0.217 0.783
27 H 0.299 0.701
28 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -7.965 -20.274 -0.025 21.783
hybrid contribution 1.637 1.513 -0.007 2.230
sum -6.328 -18.761 -0.031 19.800
Atomic orbital electron populations
1.69645 1.06736 1.29689 1.49194 1.26045 0.96602 1.02341 0.95682
0.84899 0.77873 0.76628 0.78771 1.19499 1.19204 1.19924 1.19674
0.92822 0.83657 1.50765 0.90303 1.41700 1.09539 1.04044 1.64175
1.20367 0.88106 0.85823 0.83780 1.90540 1.16137 1.87866 1.56803
1.22339 0.90798 0.82868 1.05154 1.86194 1.35043 1.11452 1.89600
1.17693 0.91611 0.85347 1.03555 1.25818 0.99443 1.06448 1.15307
1.82621 0.98045 0.92623 1.64171 1.23325 1.01090 0.93723 1.20613
1.19125 0.83740 0.84650 0.71569 1.90973 1.16923 1.87253 1.47828
1.84943 1.41261 1.18646 1.85367 1.19931 1.01867 0.88468 1.00271
0.90940 0.76324 0.87205 0.87216 0.78338 0.70148 0.83298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -47.31 13.05 21.66 0.28 -47.03 15
2 C -0.01 -0.30 5.50 84.93 0.47 0.17 15
3 Si 1.00 41.91 29.55 68.60 2.03 43.94 15
4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15
5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 15
6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 15
7 C -0.34 -19.07 9.68 84.04 0.81 -18.25 15
8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 15
9 N -0.56 -27.94 5.29 -306.98 -1.62 -29.56 15
10 C 0.43 20.94 7.86 87.66 0.69 21.63 15
11 O -0.63 -36.83 16.08 15.96 0.26 -36.57 15
12 C 0.07 2.27 5.34 71.24 0.38 2.65 15
13 O -0.31 -11.54 9.74 -76.90 -0.75 -12.29 15
14 C 0.07 2.12 6.61 21.20 0.14 2.26 15
15 C -0.33 -6.85 9.81 66.88 0.66 -6.20 15
16 S 0.36 5.62 22.92 -56.49 -1.29 4.32 15
17 C -0.27 -5.98 6.45 24.06 0.16 -5.82 15
18 C 0.57 11.85 8.27 69.93 0.58 12.43 15
19 O -0.54 -14.97 17.57 19.40 0.34 -14.63 15
20 O -0.49 -6.00 13.40 -58.21 -0.78 -6.78 15
21 C -0.07 -1.90 10.00 21.81 0.22 -1.69 15
22 H 0.28 13.57 8.31 -92.71 -0.77 12.80 15
23 H 0.40 18.43 7.90 -92.71 -0.73 17.70 15
24 H 0.11 3.01 7.84 -2.39 -0.02 2.99 15
25 H 0.11 3.01 7.85 -2.39 -0.02 2.99 15
26 H 0.20 3.14 6.96 -2.91 -0.02 3.12 15
27 H 0.44 1.31 8.98 -74.06 -0.67 0.65 15
28 H 0.15 4.44 8.06 -2.91 -0.02 4.42 15
Total: -1.00 -75.65 281.48 2.41 -73.24
By element:
Atomic # 1 Polarization: 18.33 SS G_CDS: -0.15 Total: 18.18 kcal
Atomic # 6 Polarization: 3.08 SS G_CDS: 4.10 Total: 7.18 kcal
Atomic # 7 Polarization: -75.25 SS G_CDS: -1.34 Total: -76.59 kcal
Atomic # 8 Polarization: -69.33 SS G_CDS: -0.93 Total: -70.27 kcal
Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal
Atomic # 16 Polarization: 5.62 SS G_CDS: -1.29 Total: 4.32 kcal
Total: -75.65 2.41 -73.24 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085656538.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.530 kcal
(2) G-P(sol) polarization free energy of solvation -75.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.175 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.765 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds