Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48494 * 109.47533 * 270.00168 * 3 2 1 5 5 H 1.48498 * 109.47096 * 30.00462 * 3 2 1 6 6 H 1.48500 * 109.46959 * 149.99918 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.42905 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.36210 * 116.99760 * 180.02562 * 13 12 10 15 15 C 1.34126 * 122.49832 * 0.02562 * 14 13 12 16 16 S 1.70602 * 110.98294 * 180.02562 * 15 14 13 17 17 C 1.75813 * 91.62324 * 359.97438 * 16 15 14 18 18 C 1.46350 * 125.43367 * 179.97438 * 17 16 15 19 19 O 1.21633 * 120.00402 * 180.02562 * 18 17 16 20 20 O 1.34906 * 119.99736 * 0.02641 * 18 17 16 21 21 C 1.36848 * 109.13431 * 359.74254 * 17 16 15 22 22 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 25 25 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 26 26 H 1.08008 * 124.50663 * 0.02562 * 15 14 13 27 27 H 0.96696 * 114.00189 * 179.97438 * 20 18 17 28 28 H 1.08005 * 123.37390 * 180.24327 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1727 -5.9490 -0.0027 14 6 1.6521 -7.2077 -0.0038 15 6 0.3314 -7.4413 -0.0049 16 16 0.0072 -9.1162 -0.0054 17 6 1.7231 -9.4991 -0.0048 18 6 2.2916 -10.8476 -0.0043 19 8 3.4984 -10.9990 -0.0034 20 8 1.4769 -11.9230 -0.0048 21 6 2.4424 -8.3349 -0.0101 22 1 -0.4851 0.8400 0.0004 23 1 0.3535 -2.3906 -0.0005 24 1 0.6170 -4.9201 -0.8920 25 1 0.6177 -4.9213 0.8880 26 1 -0.4262 -6.6714 -0.0054 27 1 1.9435 -12.7699 -0.0049 28 1 3.5220 -8.3036 -0.0146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085656538.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = -152.765135 kcal Electronic energy + Delta-G solvation = -17230.494175 eV Core-core repulsion = 13951.963638 eV Total energy + Delta-G solvation = -3278.530537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.41598 -40.96074 -39.79978 -37.35733 -36.77578 -36.00957 -33.41042 -30.88272 -29.99008 -27.04294 -26.05761 -23.19257 -21.45429 -20.55388 -20.16720 -19.99558 -18.70563 -18.08816 -17.83863 -17.32761 -16.77614 -16.75941 -16.29272 -15.86262 -15.27395 -15.17096 -14.88681 -14.27407 -13.96444 -13.78328 -13.56029 -13.03340 -12.95696 -12.70577 -12.48168 -12.14316 -12.12328 -11.98956 -11.88766 -11.58628 -10.49358 -10.11164 -10.08334 -9.05173 -8.53003 -6.02904 -0.82571 0.36160 0.78731 1.11028 1.35761 1.42130 1.53657 1.71157 1.77617 1.89336 2.16231 2.39363 3.12993 3.26092 3.83992 3.96114 4.12819 4.15206 4.23104 4.29083 4.59954 4.75455 4.99194 5.36597 5.37379 5.87117 6.18452 6.51290 6.78483 7.04092 7.41379 7.96977 8.63819 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.055942 B = 0.003207 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.398360 B = 8728.211642 C = 9213.464202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.006 4.006 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.340 4.340 8 H 0.079 0.921 9 N -0.557 5.557 10 C 0.432 3.568 11 O -0.626 6.626 12 C 0.067 3.933 13 O -0.309 6.309 14 C 0.074 3.926 15 C -0.332 4.332 16 S 0.357 5.643 17 C -0.269 4.269 18 C 0.565 3.435 19 O -0.537 6.537 20 O -0.489 6.489 21 C -0.069 4.069 22 H 0.281 0.719 23 H 0.402 0.598 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.200 0.800 27 H 0.437 0.563 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 -19.955 -0.029 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.207 4.207 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.097 0.903 9 N -0.195 5.195 10 C 0.219 3.781 11 O -0.513 6.513 12 C -0.012 4.012 13 O -0.223 6.223 14 C 0.018 3.982 15 C -0.470 4.470 16 S 0.625 5.375 17 C -0.388 4.388 18 C 0.409 3.591 19 O -0.430 6.430 20 O -0.302 6.302 21 C -0.105 4.105 22 H 0.091 0.909 23 H 0.237 0.763 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.217 0.783 27 H 0.299 0.701 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.965 -20.274 -0.025 21.783 hybrid contribution 1.637 1.513 -0.007 2.230 sum -6.328 -18.761 -0.031 19.800 Atomic orbital electron populations 1.69645 1.06736 1.29689 1.49194 1.26045 0.96602 1.02341 0.95682 0.84899 0.77873 0.76628 0.78771 1.19499 1.19204 1.19924 1.19674 0.92822 0.83657 1.50765 0.90303 1.41700 1.09539 1.04044 1.64175 1.20367 0.88106 0.85823 0.83780 1.90540 1.16137 1.87866 1.56803 1.22339 0.90798 0.82868 1.05154 1.86194 1.35043 1.11452 1.89600 1.17693 0.91611 0.85347 1.03555 1.25818 0.99443 1.06448 1.15307 1.82621 0.98045 0.92623 1.64171 1.23325 1.01090 0.93723 1.20613 1.19125 0.83740 0.84650 0.71569 1.90973 1.16923 1.87253 1.47828 1.84943 1.41261 1.18646 1.85367 1.19931 1.01867 0.88468 1.00271 0.90940 0.76324 0.87205 0.87216 0.78338 0.70148 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.31 13.05 21.66 0.28 -47.03 15 2 C -0.01 -0.30 5.50 84.93 0.47 0.17 15 3 Si 1.00 41.91 29.55 68.60 2.03 43.94 15 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 15 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 15 7 C -0.34 -19.07 9.68 84.04 0.81 -18.25 15 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 15 9 N -0.56 -27.94 5.29 -306.98 -1.62 -29.56 15 10 C 0.43 20.94 7.86 87.66 0.69 21.63 15 11 O -0.63 -36.83 16.08 15.96 0.26 -36.57 15 12 C 0.07 2.27 5.34 71.24 0.38 2.65 15 13 O -0.31 -11.54 9.74 -76.90 -0.75 -12.29 15 14 C 0.07 2.12 6.61 21.20 0.14 2.26 15 15 C -0.33 -6.85 9.81 66.88 0.66 -6.20 15 16 S 0.36 5.62 22.92 -56.49 -1.29 4.32 15 17 C -0.27 -5.98 6.45 24.06 0.16 -5.82 15 18 C 0.57 11.85 8.27 69.93 0.58 12.43 15 19 O -0.54 -14.97 17.57 19.40 0.34 -14.63 15 20 O -0.49 -6.00 13.40 -58.21 -0.78 -6.78 15 21 C -0.07 -1.90 10.00 21.81 0.22 -1.69 15 22 H 0.28 13.57 8.31 -92.71 -0.77 12.80 15 23 H 0.40 18.43 7.90 -92.71 -0.73 17.70 15 24 H 0.11 3.01 7.84 -2.39 -0.02 2.99 15 25 H 0.11 3.01 7.85 -2.39 -0.02 2.99 15 26 H 0.20 3.14 6.96 -2.91 -0.02 3.12 15 27 H 0.44 1.31 8.98 -74.06 -0.67 0.65 15 28 H 0.15 4.44 8.06 -2.91 -0.02 4.42 15 Total: -1.00 -75.65 281.48 2.41 -73.24 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -0.15 Total: 18.18 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 4.10 Total: 7.18 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -1.34 Total: -76.59 kcal Atomic # 8 Polarization: -69.33 SS G_CDS: -0.93 Total: -70.27 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.29 Total: 4.32 kcal Total: -75.65 2.41 -73.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085656538.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.530 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds